Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0003521

Physical Location & Seq

Genomic Coordinates Reverse (-)

11515223 .. 11517660

Gene Structure 2438 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G191600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGCCATCGTGGAGAACCACCACCACCATCACCACCGGCACAAGTCCCACTCCGACGTGAAGCTCTTCGCTCTCTGCCCGTTTTGGCAGTCCGGGGGCCAAACGTCGTCGTCTTCCTCCTCCACGCAGAACCTCCAGGGCCACGTCGACGGATCCAAGTCGAAGCCCAAAACGGTGTCGTCCGTCGCCAGATCGCTTCTCCCTCCCCGCCGTCGGCTCCGGCTCGACCCCGCCAACAAACTCTACTTCCCTTATGAACCTGGGAAACAGGTGAAGAGCGCAATCCGGTTAAAGAACACTAGCAGGTCTCATGTAGCTTTCAAGTTTCAAACTACTGCGCCAAAAAGCTGTTATATGCGTCCTCCGGGAGGTATACTTGCTCCGGGAGAAAGCATAATTGCGACTGTGTTTAGGTTTGTCGAACAACCCGAGAACAATGAGAAACATTTGGATCAGAAAACCAAGGTTAAGTTCAAGATTGTGAGTCTGAAGGTGACAGCAGGAACAGACTATGTGCCTGAGCTGTTTGACGAACAAAAGGATCAAGTGACTGTTGAGCGAATTTTGCGGGTTGTATTTTTGGATGCAGAGCACCCTAGTCCTGCTCTGGAAAAACTGAAGAGACAGTTGGCCGAAGCTGAGGCTGCACTTGAAGTGCGTAAAAAACCTCCTGTGGACTCGGGCCCTCGTGATGTCGGGGAAGGCCTTGTAATAGATGAATGGAAGGAGCGGAGGGAGAAATACTTGGCTCGGCAGCAAGTTGGAGCAGTAGATTCAGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0016020 GO:0044464 GO:0050896 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Motile_Sperm

Protein Analysis

261

Amino Acids

29.28

Weight (kDa)

9.67

Isoelectric Point (pI)

47.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003521)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54110 AT5G54110
fragaria_vesca	FvH4_3g21120 FvH4_6g44480 FvH4_6g44480
malus_domestica	MD03G1217600.v1.1 MD09G1096700.v1.1 MD11G1235400.v1.1 MD17G1085000.v1.1
prunus_persica	Prupe.3G230200_v2.0.a1 Prupe.4G191600_v2.0.a1
pyrus_communis	pycom03g16720 pycom09g02110 pycom11g20710 pycom17g08230
rosa_chinensis	RchiOBHm_Chr2g0161541 RchiOBHm_Chr5g0036131
rosa_laevigata	RLG00000021290 RLG00000033673
rosa_multiflora	Rmu_sc0000382.1_g000010 Rmu_sc0013623.1_g000001
rosa_roxburghii	Rroxscaffold_1G00044610 Rroxscaffold_2G00088720
rosa_rugosa	Rorug02G0490400 Rorug05G0152700
rosa_samantha	Rh2AG556700 Rh2BG570000 Rh2CG540500 Rh2DG579400 Rh5AG247300 Rh5BG247700 Rh5CG278700 Rh5DG256100
rosa_wichuraiana	Rw2G046070 Rw5G022680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	294
AccBSI	CCGCTC	1 cut(s)	730
AccI	GTMKAC	2 cut(s)	147, 373
AciI	CCGC	4 cut(s)	208, 231, 568, 730
AclWI	GGATC	4 cut(s)	147, 160, 459, 549
AcoI	YGGCCR	2 cut(s)	3, 630
AcsI	RAATTY	1 cut(s)	561
AcuI	CTGAAG	2 cut(s)	509, 638
AfiI	CCNNNNNNNGG	2 cut(s)	213, 368
AgsI	TTSAA	4 cut(s)	322, 329, 475, 653
AjiI	CACGTC	2 cut(s)	58, 145
AjnI	CCWGG	2 cut(s)	135, 259
AjuI	GAANNNNNNNTTGG	4 cut(s)	455, 487, 611, 643
AluBI	AGCT	5 cut(s)	64, 317, 348, 523, 638
AluI	AGCT	5 cut(s)	64, 317, 348, 523, 638
Alw21I	GWGCWC	1 cut(s)	594
Alw26I	GTCTC	2 cut(s)	312, 616
AlwI	GGATC	4 cut(s)	147, 160, 459, 549
Ama87I	CYCGRG	2 cut(s)	428, 679
AoxI	GGCC	6 cut(s)	3, 97, 139, 630, 682, 703
ApaI	GGGCCC	1 cut(s)	686
ApeKI	GCWGC	2 cut(s)	644, 754
ApoI	RAATTY	1 cut(s)	561
Asp700I	GAANNNNTTC	1 cut(s)	65
AspLEI	GCGC	2 cut(s)	281, 340
AspS9I	GGNCC	4 cut(s)	97, 139, 682, 683
AsuC2I	CCSGG	3 cut(s)	94, 366, 384
AsuHPI	GGTGA	3 cut(s)	23, 283, 505
AvaI	CYCGRG	2 cut(s)	428, 679
BaeGI	GKGCMC	1 cut(s)	686
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	152
BanII	GRGCYC	1 cut(s)	686
BauI	CACGAG	1 cut(s)	687
BbsI	GAAGAC	1 cut(s)	105
Bbv12I	GWGCWC	1 cut(s)	594
BbvCI	CCTCAGC	1 cut(s)	639
BbvI	GCAGC	2 cut(s)	631, 766
BccI	CCATC	2 cut(s)	14, 36
BceAI	ACGGC	1 cut(s)	195
BciT130I	CCWGG	2 cut(s)	137, 261
BcnI	CCSGG	3 cut(s)	94, 366, 384
BcoDI	GTCTC	2 cut(s)	312, 616
BfaI	CTAG	2 cut(s)	300, 597
BfuAI	ACCTGC	1 cut(s)	294
BisI	GCNGC	2 cut(s)	645, 755
BlsI	GCNGC	2 cut(s)	646, 756
Bme1390I	CCNGG	5 cut(s)	94, 137, 261, 366, 384
BmeT110I	CYCGRG	2 cut(s)	428, 679
BmgBI	CACGTC	2 cut(s)	58, 145
BmgT120I	GGNCC	4 cut(s)	97, 139, 682, 683
BmiI	GGNNCC	4 cut(s)	98, 154, 218, 684
BmrFI	CCNGG	5 cut(s)	94, 137, 261, 366, 384
BmsI	GCATC	1 cut(s)	574
BpiI	GAAGAC	1 cut(s)	105
BpmI	CTGGAG	1 cut(s)	119
Bpu10I	CCTNAGC	2 cut(s)	519, 639
BpuMI	CCSGG	3 cut(s)	94, 366, 384
BsaI	GGTCTC	1 cut(s)	312
BsaJI	CCNNGG	4 cut(s)	93, 136, 260, 462
BsaWI	WCCGGW	1 cut(s)	285
Bsc4I	CCNNNNNNNGG	2 cut(s)	213, 368
Bse118I	RCCGGY	1 cut(s)	36
BseBI	CCWGG	2 cut(s)	137, 261
BseDI	CCNNGG	4 cut(s)	93, 136, 260, 462
BseGI	GGATG	1 cut(s)	589
BseLI	CCNNNNNNNGG	2 cut(s)	213, 368
BseMII	CTCAG	2 cut(s)	510, 630
BseRI	GAGGAG	1 cut(s)	109
BseSI	GKGCMC	1 cut(s)	686
BseXI	GCAGC	2 cut(s)	631, 766
BsgI	GTGCAG	1 cut(s)	630
BshFI	GGCC	6 cut(s)	5, 99, 141, 632, 684, 705
BsiHKAI	GWGCWC	1 cut(s)	594
BsiHKCI	CYCGRG	2 cut(s)	428, 679
BsiSI	CCGG	6 cut(s)	37, 93, 220, 286, 365, 383
BslFI	GGGAC	1 cut(s)	31
BslI	CCNNNNNNNGG	2 cut(s)	213, 368
BsmAI	GTCTC	2 cut(s)	312, 616
BsmFI	GGGAC	1 cut(s)	31
BsnI	GGCC	6 cut(s)	5, 99, 141, 632, 684, 705
Bso31I	GGTCTC	1 cut(s)	312
BsoBI	CYCGRG	2 cut(s)	428, 679
Bsp120I	GGGCCC	1 cut(s)	682
Bsp1286I	GDGCHC	2 cut(s)	594, 686
Bsp143I	GATC	4 cut(s)	152, 191, 451, 541
BspACI	CCGC	4 cut(s)	208, 231, 568, 730
BspANI	GGCC	6 cut(s)	5, 99, 141, 632, 684, 705
BspCNI	CTCAG	2 cut(s)	511, 631
BspLI	GGNNCC	4 cut(s)	98, 154, 218, 684
BspMI	ACCTGC	1 cut(s)	294
BspPI	GGATC	4 cut(s)	147, 160, 459, 549
BspQI	GCTCTTC	2 cut(s)	71, 269
BspTNI	GGTCTC	1 cut(s)	312
BsrBI	CCGCTC	1 cut(s)	730
BsrFI	RCCGGY	1 cut(s)	36
BssAI	RCCGGY	1 cut(s)	36
BssECI	CCNNGG	4 cut(s)	93, 136, 260, 462
BssMI	GATC	4 cut(s)	152, 191, 451, 541
BssNAI	GTATAC	1 cut(s)	374
BssSI	CACGAG	1 cut(s)	687
BssT1I	CCWWGG	1 cut(s)	462
Bst1107I	GTATAC	1 cut(s)	374
Bst2BI	CACGAG	1 cut(s)	687
Bst2UI	CCWGG	2 cut(s)	137, 261
Bst4CI	ACNGT	4 cut(s)	175, 406, 553, 627
Bst6I	CTCTTC	3 cut(s)	71, 269, 614
BstDEI	CTNAG	2 cut(s)	519, 639
BstENI	CCTNNNNNAGG	1 cut(s)	366
BstF5I	GGATG	1 cut(s)	589
BstHHI	GCGC	2 cut(s)	281, 340
BstKTI	GATC	4 cut(s)	155, 194, 454, 544
BstMAI	GTCTC	2 cut(s)	312, 616
BstMBI	GATC	4 cut(s)	152, 191, 451, 541
BstMWI	GCNNNNNNNGC	2 cut(s)	565, 644
BstNI	CCWGG	2 cut(s)	137, 261
BstSCI	CCNGG	5 cut(s)	92, 135, 259, 364, 382
BstSLI	GKGCMC	1 cut(s)	686
BstV1I	GCAGC	2 cut(s)	631, 766
BstV2I	GAAGAC	1 cut(s)	105
BstX2I	RGATCY	1 cut(s)	152
BstYI	RGATCY	1 cut(s)	152
BstZ17I	GTATAC	1 cut(s)	374
BsuRI	GGCC	6 cut(s)	5, 99, 141, 632, 684, 705
BtrI	CACGTC	2 cut(s)	58, 145
BtsCI	GGATG	1 cut(s)	589
BveI	ACCTGC	1 cut(s)	294
CfoI	GCGC	2 cut(s)	281, 340
Cfr10I	RCCGGY	1 cut(s)	36
Cfr13I	GGNCC	4 cut(s)	97, 139, 682, 683
CseI	GACGC	1 cut(s)	347
CviAII	CATG	1 cut(s)	311
DdeI	CTNAG	2 cut(s)	519, 639
DpnI	GATC	4 cut(s)	154, 193, 453, 543
DpnII	GATC	4 cut(s)	152, 191, 451, 541
EaeI	YGGCCR	2 cut(s)	3, 630
Eam1104I	CTCTTC	3 cut(s)	71, 269, 614
EarI	CTCTTC	3 cut(s)	71, 269, 614
Eco130I	CCWWGG	1 cut(s)	462
Eco147I	AGGCCT	1 cut(s)	705
Eco24I	GRGCYC	1 cut(s)	686
Eco31I	GGTCTC	1 cut(s)	312
Eco57I	CTGAAG	2 cut(s)	509, 638
Eco88I	CYCGRG	2 cut(s)	428, 679
EcoNI	CCTNNNNNAGG	1 cut(s)	366
EcoO109I	RGGNCCY	1 cut(s)	683
EcoRII	CCWGG	2 cut(s)	135, 259
EcoT14I	CCWWGG	1 cut(s)	462
EcoT38I	GRGCYC	1 cut(s)	686
ErhI	CCWWGG	1 cut(s)	462
FaeI	CATG	1 cut(s)	314
FaiI	YATR	8 cut(s)	255, 312, 354, 356, 374, 395, 513, 781
FaqI	GGGAC	1 cut(s)	31
FatI	CATG	1 cut(s)	310
FauI	CCCGC	3 cut(s)	215, 238, 561
FblI	GTMKAC	2 cut(s)	147, 373
Fnu4HI	GCNGC	2 cut(s)	645, 755
FokI	GGATG	1 cut(s)	596
FriOI	GRGCYC	1 cut(s)	686
Fsp4HI	GCNGC	2 cut(s)	645, 755
FspBI	CTAG	2 cut(s)	300, 597
GlaI	GCGC	2 cut(s)	280, 339
GluI	GCNGC	2 cut(s)	645, 755
GsuI	CTGGAG	1 cut(s)	119
HaeIII	GGCC	6 cut(s)	5, 99, 141, 632, 684, 705
HapII	CCGG	6 cut(s)	37, 93, 220, 286, 365, 383
HgaI	GACGC	1 cut(s)	347
HhaI	GCGC	2 cut(s)	281, 340
Hin1II	CATG	1 cut(s)	314
Hin6I	GCGC	2 cut(s)	279, 338
HinP1I	GCGC	2 cut(s)	279, 338
HincII	GTYRAC	1 cut(s)	148
HindII	GTYRAC	1 cut(s)	148
HinfI	GANTC	3 cut(s)	484, 677, 773
HpaII	CCGG	6 cut(s)	37, 93, 220, 286, 365, 383
HphI	GGTGA	3 cut(s)	23, 283, 505
Hpy166II	GTNNAC	3 cut(s)	148, 374, 676
Hpy188I	TCNGA	3 cut(s)	55, 456, 489
Hpy188III	TCNNGA	3 cut(s)	475, 608, 689
Hpy8I	GTNNAC	3 cut(s)	148, 374, 676
Hpy99I	CGWCG	7 cut(s)	59, 109, 112, 149, 152, 188, 216
HpyAV	CCTTC	3 cut(s)	484, 695, 718
HpyCH4III	ACNGT	4 cut(s)	175, 406, 553, 627
HpyCH4IV	ACGT	3 cut(s)	57, 104, 144
HpyCH4V	TGCA	2 cut(s)	587, 647
HpyF10VI	GCNNNNNNNGC	2 cut(s)	565, 644
HpyF3I	CTNAG	2 cut(s)	519, 639
HpySE526I	ACGT	3 cut(s)	57, 104, 144
Hsp92II	CATG	1 cut(s)	314
HspAI	GCGC	2 cut(s)	279, 338
Kzo9I	GATC	4 cut(s)	152, 191, 451, 541
LguI	GCTCTTC	2 cut(s)	71, 269
LmnI	GCTCC	4 cut(s)	222, 385, 727, 764
Lsp1109I	GCAGC	2 cut(s)	631, 766
LweI	GCATC	1 cut(s)	574
MaeI	CTAG	2 cut(s)	300, 597
MaeII	ACGT	3 cut(s)	57, 104, 144
MaeIII	GTNAC	2 cut(s)	493, 547
MalI	GATC	4 cut(s)	154, 193, 453, 543
MbiI	CCGCTC	1 cut(s)	730
MboI	GATC	4 cut(s)	152, 191, 451, 541
MboII	GAAGA	4 cut(s)	58, 105, 286, 631
MflI	RGATCY	1 cut(s)	152
MhlI	GDGCHC	2 cut(s)	594, 686
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	396, 561
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	493, 671
MmeI	TCCRAC	2 cut(s)	78, 742
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	65
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	290, 468
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	6 cut(s)	37, 93, 220, 286, 365, 383
MspR9I	CCNGG	5 cut(s)	94, 137, 261, 366, 384
MvaI	CCWGG	2 cut(s)	137, 261
MwoI	GCNNNNNNNGC	2 cut(s)	565, 644
NciI	CCSGG	3 cut(s)	94, 366, 384
NdeII	GATC	4 cut(s)	152, 191, 451, 541
NlaIII	CATG	1 cut(s)	314
NlaIV	GGNNCC	4 cut(s)	98, 154, 218, 684
NmeAIII	GCCGAG	1 cut(s)	730
NmuCI	GTSAC	2 cut(s)	493, 547
PceI	AGGCCT	1 cut(s)	705
PciSI	GCTCTTC	2 cut(s)	71, 269
PcsI	WCGNNNNNNNCGW	1 cut(s)	426
PdmI	GAANNNNTTC	1 cut(s)	65
PfeI	GAWTC	1 cut(s)	773
PfoI	TCCNGGA	2 cut(s)	364, 382
PkrI	GCNGC	2 cut(s)	646, 756
PleI	GAGTC	2 cut(s)	492, 671
PpsI	GAGTC	2 cut(s)	492, 671
Psp6I	CCWGG	2 cut(s)	135, 259
PspGI	CCWGG	2 cut(s)	135, 259
PspN4I	GGNNCC	4 cut(s)	98, 154, 218, 684
PspOMI	GGGCCC	1 cut(s)	682
PspPI	GGNCC	4 cut(s)	97, 139, 682, 683
PsuI	RGATCY	1 cut(s)	152
SalI	GTCGAC	1 cut(s)	146
SapI	GCTCTTC	2 cut(s)	71, 269
SaqAI	TTAA	2 cut(s)	290, 468
SatI	GCNGC	2 cut(s)	645, 755
Sau3AI	GATC	4 cut(s)	152, 191, 451, 541
Sau96I	GGNCC	4 cut(s)	97, 139, 682, 683
SchI	GAGTC	2 cut(s)	493, 671
ScrFI	CCNGG	5 cut(s)	94, 137, 261, 366, 384
SduI	GDGCHC	2 cut(s)	594, 686
SfaNI	GCATC	1 cut(s)	574
SgrDI	CGTCGACG	1 cut(s)	146
Sse9I	AATT	2 cut(s)	396, 561
SseBI	AGGCCT	1 cut(s)	705
SsiI	CCGC	4 cut(s)	208, 231, 568, 730
SspMI	CTAG	2 cut(s)	300, 597
StuI	AGGCCT	1 cut(s)	705
StyD4I	CCNGG	5 cut(s)	92, 135, 259, 364, 382
StyI	CCWWGG	1 cut(s)	462
TaaI	ACNGT	4 cut(s)	175, 406, 553, 627
TaiI	ACGT	3 cut(s)	60, 107, 147
TaqI	TCGA	4 cut(s)	147, 161, 225, 420
TasI	AATT	2 cut(s)	396, 561
TfiI	GAWTC	1 cut(s)	773
Tru1I	TTAA	2 cut(s)	290, 468
Tru9I	TTAA	2 cut(s)	290, 468
TseFI	GTSAC	2 cut(s)	493, 547
TseI	GCWGC	2 cut(s)	644, 754
Tsp45I	GTSAC	2 cut(s)	493, 547
TspDTI	ATGAA	2 cut(s)	270, 732
TspGWI	ACGGA	2 cut(s)	165, 172
XagI	CCTNNNNNAGG	1 cut(s)	366
XapI	RAATTY	1 cut(s)	561
XmiI	GTMKAC	2 cut(s)	147, 373
XmnI	GAANNNNTTC	1 cut(s)	65
XspI	CTAG	2 cut(s)	300, 597

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.