Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0003521

Physical Location & Seq

Genomic Coordinates Reverse (-)

6142687 .. 6145255

Gene Structure 2569 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g08230.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGGCTGTGGAGGCTGAGAAATCTGGGCCTGACGGGAAGCTTTGGAATCTATTCAAAATGCCGTTTTGGCAGTCTGGGAACGCTTCTTCGTCGTCGTCCTCGACCTTGTCTTCAATGCATCACAATGTTCACCACCAGCTGGGTCAGATTCACGAGTCTGCGGCGGAGCGGATGGCTCTTCATTCCGCCAGTACGGTGTCGTACGTGACCAAGTCTTTGCTTCCGGCTAGGAGAAGGCTGCATCTTGATCCTCCGAATAAGCTCTTTTTTCCATATGAACCCGGTAAACAGGTCAGGAGTGCAATTGGGATAAAAAACACAAGCAAGTCTCTTGTAGCTTTCAAGTTCCAAACAACTGCACCAAAGAGTTGTTACATGCGTCCTCCTGGGGGTATACTTGCTCCTGGTGAAAGTCTTATTGCAACTGTTTTCAAGTTTGTGGAACCTCCGGAGAACGATGAGAAACCAGCTGTAGACCAGAAGAGCAGGGTGAAGTTCAAGATCATGAGCTTAAAAGTGAAAGGAGATATGGACTATGTACCAGAACTGTTTGATGAGCAGAGGGACGAAGTCGTGGTTGAGCAGGTTTTGCGTGTTGTTTTCCTTGACCCTGAACGCCCTACCCCTGCAATGGAAAAACTTAAGCGGCAATTGGCCGAAGCTGAAGCTGCCCTTGAAACACGAAAGAAACCTCCAGAAGAAGCAGGCCCCCGGATTGTAGGGGAAGGACTTGTCATAGATGAATGGAAAGAGCGCAGGGAAAGATACCTAGCGCAGCAGCAGGTTGAAGGGGCTGATTCAGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Motile_Sperm

Protein Analysis

269

Amino Acids

30.05

Weight (kDa)

8.49

Isoelectric Point (pI)

51.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003521)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54110 AT5G54110
fragaria_vesca	FvH4_3g21120 FvH4_6g44480 FvH4_6g44480
malus_domestica	MD03G1217600.v1.1 MD09G1096700.v1.1 MD11G1235400.v1.1 MD17G1085000.v1.1
prunus_persica	Prupe.3G230200_v2.0.a1 Prupe.4G191600_v2.0.a1
pyrus_communis	pycom03g16720 pycom09g02110 pycom11g20710 pycom17g08230
rosa_chinensis	RchiOBHm_Chr2g0161541 RchiOBHm_Chr5g0036131
rosa_laevigata	RLG00000021290 RLG00000033673
rosa_multiflora	Rmu_sc0000382.1_g000010 Rmu_sc0013623.1_g000001
rosa_roxburghii	Rroxscaffold_1G00044610 Rroxscaffold_2G00088720
rosa_rugosa	Rorug02G0490400 Rorug05G0152700
rosa_samantha	Rh2AG556700 Rh2BG570000 Rh2CG540500 Rh2DG579400 Rh5AG247300 Rh5BG247700 Rh5CG278700 Rh5DG256100
rosa_wichuraiana	Rw2G046070 Rw5G022680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	574, 772
AccB7I	CCANNNNNTGG	1 cut(s)	139
AccBSI	CCGCTC	1 cut(s)	169
AccI	GTMKAC	2 cut(s)	394, 474
AccIII	TCCGGA	1 cut(s)	448
AciI	CCGC	5 cut(s)	161, 164, 169, 186, 646
AclWI	GGATC	1 cut(s)	242
AcoI	YGGCCR	1 cut(s)	654
AcuI	CTGAAG	1 cut(s)	684
AfaI	GTAC	3 cut(s)	193, 203, 540
AfiI	CCNNNNNNNGG	3 cut(s)	139, 389, 631
AflII	CTTAAG	1 cut(s)	641
AgsI	TTSAA	7 cut(s)	55, 114, 343, 433, 499, 677, 788
AjnI	CCWGG	2 cut(s)	385, 403
AluBI	AGCT	8 cut(s)	40, 139, 262, 338, 470, 510, 662, 668
AluI	AGCT	8 cut(s)	40, 139, 262, 338, 470, 510, 662, 668
Alw26I	GTCTC	1 cut(s)	333
AlwI	GGATC	1 cut(s)	242
Aor13HI	TCCGGA	1 cut(s)	448
AoxI	GGCC	3 cut(s)	26, 654, 706
ApeKI	GCWGC	4 cut(s)	238, 668, 775, 778
ArsI	GACNNNNNNTTYG	2 cut(s)	199, 231
Asp700I	GAANNNNTTC	1 cut(s)	50
AspLEI	GCGC	2 cut(s)	756, 775
AspS9I	GGNCC	2 cut(s)	26, 707
AsuC2I	CCSGG	2 cut(s)	282, 712
AsuHPI	GGTGA	3 cut(s)	122, 419, 502
BauI	CACGAG	1 cut(s)	152
BbsI	GAAGAC	1 cut(s)	102
BbvI	GCAGC	4 cut(s)	225, 655, 787, 790
BccI	CCATC	1 cut(s)	166
BceAI	ACGGC	1 cut(s)	46
BciT130I	CCWGG	2 cut(s)	387, 405
BcnI	CCSGG	2 cut(s)	282, 712
BcoDI	GTCTC	1 cut(s)	333
BfaI	CTAG	2 cut(s)	228, 770
BfmI	CTRYAG	1 cut(s)	471
BfrI	CTTAAG	1 cut(s)	641
BfuAI	ACCTGC	2 cut(s)	574, 772
BglI	GCCNNNNNGGC	1 cut(s)	67
BisI	GCNGC	6 cut(s)	162, 239, 647, 669, 776, 779
BlsI	GCNGC	6 cut(s)	163, 240, 648, 670, 777, 780
Bme1390I	CCNGG	4 cut(s)	282, 387, 405, 712
BmgT120I	GGNCC	2 cut(s)	26, 707
BmiI	GGNNCC	2 cut(s)	444, 709
BmrFI	CCNGG	4 cut(s)	282, 387, 405, 712
BmsI	GCATC	2 cut(s)	127, 250
BpiI	GAAGAC	1 cut(s)	102
BpmI	CTGGAG	1 cut(s)	678
BpuMI	CCSGG	2 cut(s)	282, 712
BsaAI	YACGTR	1 cut(s)	205
BsaJI	CCNNGG	2 cut(s)	386, 710
BsaWI	WCCGGW	1 cut(s)	448
Bsc4I	CCNNNNNNNGG	3 cut(s)	139, 389, 631
Bse1I	ACTGG	1 cut(s)	189
Bse3DI	GCAATG	1 cut(s)	636
BseAI	TCCGGA	1 cut(s)	448
BseBI	CCWGG	2 cut(s)	387, 405
BseDI	CCNNGG	2 cut(s)	386, 710
BseGI	GGATG	1 cut(s)	177
BseLI	CCNNNNNNNGG	3 cut(s)	139, 389, 631
BseMI	GCAATG	1 cut(s)	636
BseMII	CTCAG	1 cut(s)	6
BseNI	ACTGG	1 cut(s)	189
BseXI	GCAGC	4 cut(s)	225, 655, 787, 790
BseYI	CCCAGC	1 cut(s)	139
BsgI	GTGCAG	1 cut(s)	342
BshFI	GGCC	3 cut(s)	28, 656, 708
BsiSI	CCGG	4 cut(s)	224, 282, 449, 712
BsiWI	CGTACG	1 cut(s)	201
BslFI	GGGAC	1 cut(s)	578
BslI	CCNNNNNNNGG	3 cut(s)	139, 389, 631
BsmAI	GTCTC	1 cut(s)	333
BsmFI	GGGAC	1 cut(s)	578
BsnI	GGCC	3 cut(s)	28, 656, 708
Bsp13I	TCCGGA	1 cut(s)	448
Bsp143I	GATC	2 cut(s)	247, 501
BspACI	CCGC	5 cut(s)	161, 164, 169, 186, 646
BspANI	GGCC	3 cut(s)	28, 656, 708
BspCNI	CTCAG	1 cut(s)	7
BspEI	TCCGGA	1 cut(s)	448
BspHI	TCATGA	1 cut(s)	504
BspLI	GGNNCC	2 cut(s)	444, 709
BspMI	ACCTGC	2 cut(s)	574, 772
BspPI	GGATC	1 cut(s)	242
BspQI	GCTCTTC	2 cut(s)	183, 476
BspTI	CTTAAG	1 cut(s)	641
BsrBI	CCGCTC	1 cut(s)	169
BsrDI	GCAATG	1 cut(s)	636
BsrI	ACTGG	1 cut(s)	189
BssECI	CCNNGG	2 cut(s)	386, 710
BssMI	GATC	2 cut(s)	247, 501
BssNAI	GTATAC	1 cut(s)	395
BssSI	CACGAG	1 cut(s)	152
Bst1107I	GTATAC	1 cut(s)	395
Bst2BI	CACGAG	1 cut(s)	152
Bst2UI	CCWGG	2 cut(s)	387, 405
Bst4CI	ACNGT	3 cut(s)	196, 427, 549
Bst6I	CTCTTC	2 cut(s)	183, 476
BstAFI	CTTAAG	1 cut(s)	641
BstAPI	GCANNNNNTGC	1 cut(s)	589
BstBAI	YACGTR	1 cut(s)	205
BstC8I	GCNNGC	1 cut(s)	706
BstDEI	CTNAG	1 cut(s)	15
BstF5I	GGATG	1 cut(s)	177
BstHHI	GCGC	2 cut(s)	756, 775
BstKTI	GATC	2 cut(s)	250, 504
BstMAI	GTCTC	1 cut(s)	333
BstMBI	GATC	2 cut(s)	247, 501
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 67, 589, 668
BstNI	CCWGG	2 cut(s)	387, 405
BstNSI	RCATGY	1 cut(s)	379
BstSCI	CCNGG	4 cut(s)	280, 385, 403, 710
BstSFI	CTRYAG	1 cut(s)	471
BstV1I	GCAGC	4 cut(s)	225, 655, 787, 790
BstV2I	GAAGAC	1 cut(s)	102
BstZ17I	GTATAC	1 cut(s)	395
BsuRI	GGCC	3 cut(s)	28, 656, 708
BtsCI	GGATG	1 cut(s)	177
BtsIMutI	CAGTG	1 cut(s)	807
BveI	ACCTGC	2 cut(s)	574, 772
Cac8I	GCNNGC	1 cut(s)	706
CciI	TCATGA	1 cut(s)	504
CfoI	GCGC	2 cut(s)	756, 775
Cfr13I	GGNCC	2 cut(s)	26, 707
CseI	GACGC	1 cut(s)	368
Csp6I	GTAC	3 cut(s)	192, 202, 539
CviAII	CATG	2 cut(s)	376, 505
CviQI	GTAC	3 cut(s)	192, 202, 539
DdeI	CTNAG	1 cut(s)	15
DpnI	GATC	2 cut(s)	249, 503
DpnII	GATC	2 cut(s)	247, 501
EaeI	YGGCCR	1 cut(s)	654
Eam1104I	CTCTTC	2 cut(s)	183, 476
EarI	CTCTTC	2 cut(s)	183, 476
EciI	GGCGGA	2 cut(s)	175, 179
Eco57I	CTGAAG	1 cut(s)	684
EcoO109I	RGGNCCY	1 cut(s)	707
EcoRII	CCWGG	2 cut(s)	385, 403
EcoT22I	ATGCAT	1 cut(s)	120
FaeI	CATG	2 cut(s)	379, 508
FaiI	YATR	8 cut(s)	274, 276, 377, 395, 506, 530, 537, 737
FalI	AAGNNNNNCTT	2 cut(s)	657, 689
FaqI	GGGAC	1 cut(s)	578
FatI	CATG	2 cut(s)	375, 504
FauNDI	CATATG	1 cut(s)	274
FblI	GTMKAC	2 cut(s)	394, 474
Fnu4HI	GCNGC	6 cut(s)	162, 239, 647, 669, 776, 779
FokI	GGATG	1 cut(s)	184
Fsp4HI	GCNGC	6 cut(s)	162, 239, 647, 669, 776, 779
FspBI	CTAG	2 cut(s)	228, 770
GlaI	GCGC	2 cut(s)	755, 774
GluI	GCNGC	6 cut(s)	162, 239, 647, 669, 776, 779
GsaI	CCCAGC	1 cut(s)	143
GsuI	CTGGAG	1 cut(s)	678
HaeIII	GGCC	3 cut(s)	28, 656, 708
HapII	CCGG	4 cut(s)	224, 282, 449, 712
HgaI	GACGC	1 cut(s)	368
HhaI	GCGC	2 cut(s)	756, 775
Hin1II	CATG	2 cut(s)	379, 508
Hin6I	GCGC	2 cut(s)	754, 773
HinP1I	GCGC	2 cut(s)	754, 773
HindIII	AAGCTT	1 cut(s)	38
HinfI	GANTC	4 cut(s)	46, 148, 155, 797
HpaII	CCGG	4 cut(s)	224, 282, 449, 712
HphI	GGTGA	3 cut(s)	122, 419, 502
Hpy166II	GTNNAC	4 cut(s)	130, 287, 395, 475
Hpy188I	TCNGA	2 cut(s)	147, 255
Hpy188III	TCNNGA	7 cut(s)	152, 245, 295, 449, 499, 505, 695
Hpy8I	GTNNAC	4 cut(s)	130, 287, 395, 475
Hpy99I	CGWCG	2 cut(s)	94, 97
HpyAV	CCTTC	3 cut(s)	228, 719, 782
HpyCH4III	ACNGT	3 cut(s)	196, 427, 549
HpyCH4IV	ACGT	1 cut(s)	204
HpyCH4V	TGCA	6 cut(s)	118, 241, 302, 359, 422, 629
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 67, 589, 668
HpyF3I	CTNAG	1 cut(s)	15
HpySE526I	ACGT	1 cut(s)	204
Hsp92II	CATG	2 cut(s)	379, 508
HspAI	GCGC	2 cut(s)	754, 773
Kpn2I	TCCGGA	1 cut(s)	448
Kzo9I	GATC	2 cut(s)	247, 501
LguI	GCTCTTC	2 cut(s)	183, 476
LmnI	GCTCC	2 cut(s)	166, 406
Lsp1109I	GCAGC	4 cut(s)	225, 655, 787, 790
LweI	GCATC	2 cut(s)	127, 250
MaeI	CTAG	2 cut(s)	228, 770
MaeII	ACGT	1 cut(s)	204
MaeIII	GTNAC	2 cut(s)	205, 371
MalI	GATC	2 cut(s)	249, 503
MbiI	CCGCTC	1 cut(s)	169
MboI	GATC	2 cut(s)	247, 501
MboII	GAAGA	5 cut(s)	78, 102, 170, 493, 710
MfeI	CAATTG	2 cut(s)	303, 650
MluCI	AATT	2 cut(s)	303, 650
MlyI	GAGTC	1 cut(s)	164
MnlI	CCTC	7 cut(s)	4, 109, 261, 393, 456, 555, 702
Mph1103I	ATGCAT	1 cut(s)	120
MroI	TCCGGA	1 cut(s)	448
MroXI	GAANNNNTTC	1 cut(s)	50
MseI	TTAA	2 cut(s)	512, 642
MslI	CAYNNNNRTG	1 cut(s)	123
MspA1I	CMGCKG	2 cut(s)	139, 470
MspCI	CTTAAG	1 cut(s)	641
MspI	CCGG	4 cut(s)	224, 282, 449, 712
MspR9I	CCNGG	4 cut(s)	282, 387, 405, 712
MunI	CAATTG	2 cut(s)	303, 650
MvaI	CCWGG	2 cut(s)	387, 405
MwoI	GCNNNNNNNGC	4 cut(s)	11, 67, 589, 668
NciI	CCSGG	2 cut(s)	282, 712
NdeI	CATATG	1 cut(s)	274
NdeII	GATC	2 cut(s)	247, 501
NlaIII	CATG	2 cut(s)	379, 508
NlaIV	GGNNCC	2 cut(s)	444, 709
NmuCI	GTSAC	1 cut(s)	205
NsiI	ATGCAT	1 cut(s)	120
NspI	RCATGY	1 cut(s)	379
PagI	TCATGA	1 cut(s)	504
PciSI	GCTCTTC	2 cut(s)	183, 476
PcsI	WCGNNNNNNNCGW	1 cut(s)	98
PdmI	GAANNNNTTC	1 cut(s)	50
PfeI	GAWTC	3 cut(s)	46, 148, 797
Pfl23II	CGTACG	1 cut(s)	201
PflFI	GACNNNGTC	3 cut(s)	106, 211, 569
PflMI	CCANNNNNTGG	1 cut(s)	139
PkrI	GCNGC	6 cut(s)	163, 240, 648, 670, 777, 780
PleI	GAGTC	1 cut(s)	163
PpsI	GAGTC	1 cut(s)	163
Ppu21I	YACGTR	1 cut(s)	205
Psp6I	CCWGG	2 cut(s)	385, 403
PspFI	CCCAGC	1 cut(s)	139
PspGI	CCWGG	2 cut(s)	385, 403
PspLI	CGTACG	1 cut(s)	201
PspN4I	GGNNCC	2 cut(s)	444, 709
PspPI	GGNCC	2 cut(s)	26, 707
PsyI	GACNNNGTC	3 cut(s)	106, 211, 569
PvuII	CAGCTG	2 cut(s)	139, 470
RsaI	GTAC	3 cut(s)	193, 203, 540
RsaNI	GTAC	3 cut(s)	192, 202, 539
RseI	CAYNNNNRTG	1 cut(s)	123
SapI	GCTCTTC	2 cut(s)	183, 476
SaqAI	TTAA	2 cut(s)	512, 642
SatI	GCNGC	6 cut(s)	162, 239, 647, 669, 776, 779
Sau3AI	GATC	2 cut(s)	247, 501
Sau96I	GGNCC	2 cut(s)	26, 707
SchI	GAGTC	1 cut(s)	164
ScrFI	CCNGG	4 cut(s)	282, 387, 405, 712
SfaNI	GCATC	2 cut(s)	127, 250
SfcI	CTRYAG	1 cut(s)	471
SmiMI	CAYNNNNRTG	1 cut(s)	123
SmlI	CTYRAG	1 cut(s)	641
SmoI	CTYRAG	1 cut(s)	641
Sse9I	AATT	2 cut(s)	303, 650
SsiI	CCGC	5 cut(s)	161, 164, 169, 186, 646
SspMI	CTAG	2 cut(s)	228, 770
StyD4I	CCNGG	4 cut(s)	280, 385, 403, 710
TaaI	ACNGT	3 cut(s)	196, 427, 549
TaiI	ACGT	1 cut(s)	207
TaqI	TCGA	1 cut(s)	101
TasI	AATT	2 cut(s)	303, 650
TauI	GCSGC	2 cut(s)	164, 649
TfiI	GAWTC	3 cut(s)	46, 148, 797
Tru1I	TTAA	2 cut(s)	512, 642
Tru9I	TTAA	2 cut(s)	512, 642
TscAI	CASTG	1 cut(s)	807
TseFI	GTSAC	1 cut(s)	205
TseI	GCWGC	4 cut(s)	238, 668, 775, 778
Tsp45I	GTSAC	1 cut(s)	205
TspDTI	ATGAA	3 cut(s)	170, 291, 756
TspRI	CASTG	1 cut(s)	807
Tth111I	GACNNNGTC	3 cut(s)	106, 211, 569
Van91I	CCANNNNNTGG	1 cut(s)	139
Vha464I	CTTAAG	1 cut(s)	641
XceI	RCATGY	1 cut(s)	379
XmiI	GTMKAC	2 cut(s)	394, 474
XmnI	GAANNNNTTC	1 cut(s)	50
XspI	CTAG	2 cut(s)	228, 770
Zsp2I	ATGCAT	1 cut(s)	120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.