pycom09g02110

Vesicle-associated protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
Physical Location & Seq
Reverse (-)
1585719 .. 1588738
3020 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g02110.6

Sequence Viewer

Length: 1119 bp
ATGTTTTTAAACTTGATCCTCAGCTTAAACTGTAAAAGTAACCACCGCCAGTTCCGACAATCCAAAAAGTCCAGAACGAAGGGTCGCATTCATCCGCATTCGGCGTTCGCATTCCATAAAGACCTTTCACAAACACTACGTGCCACCAAAGTCTCAATCTTTCAGCTTTCGCCTTCAATCCGCACAAAGCGAATTCTCGTTCAATCCGCGCAAAACAAAATCTCTTTTTTGACTGTTTTCACACCATCTCCGGCGAAACCCGTTTGCCCGCGGCCACCGCGAAGTGATTTCCGGCGAGTAGGGTCGACAATGGCTGTGGAGGCTGAGAAATCTGGGCATGAAGGGAAGCTTTGGAGTCTGTTCAAAATACCGTTTTGGCCCGGAAACGCCTCCTCGTCTTCCTCTTCGTCATCGTCCTCGACCTTGTCTTCTATGCATCATAATGTTCACCACCAGCTGGGTCACGAGTCTGCGGCTGAACGTACGGCTCTTCATTCTGCCAGTACGGTGTCGTATGTGACCAAGTCTTTGCTTCCTGCTCGGAGGAGGCTGCGTCTTGATCCTCCAAATAAGCTATTTTTTCCATATGAACCCGGTAAACAGGTCAGGAGTGCAATTGGAATAAAAAACACAAGCAAAACTATTGTAGCTTTCAAGTTCCAAACAACTGCACCAAAGAGTTGTTACATGCGTCCTCCTGGGGGTATACTTGCTCCTGGTGAAGGTCTTATTGCAACTGTTTTCAAGTTTGTGGAACCTCCAGAGAACGATGAGAAACCAGCTGTAGACCAGAAGAGCAGGGTTAAGTTCAAGATCATGAGCTTAAAAGTGAAAGGAGATATGGACTATGTGCCAGAACTGTTTGATGAGCAGAGGGACCAAGTCGTGGTTGAGCAGGTTTTGCGCGTTGTTTTTCTTGACCCTGAGCGCCCTACCCCTGCAATGGAAAAACTTGAGCGGCAATTGGCCGAGGCTGAGGCTGCCCTTGAATCACGAAAAAAGCCTCCACAAGAAGCAGGTCCCCGGATAGTAGGGGAAGGACTTGTCATAGATGAATGGAAAGAGCGCAGGGAAAGATACCTAGCGCAGCAGCAGGTTGAAGGGGTTGATTCAGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

373

Amino Acids

41.79

Weight (kDa)

9.98

Isoelectric Point (pI)

52.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 3 cut(s) 886, 1007, 1084
AccB7I CCANNNNNTGG 2 cut(s) 457, 886
AccBSI CCGCTC 1 cut(s) 958
AccI GTMKAC 3 cut(s) 305, 706, 786
AccII CGCG 4 cut(s) 209, 271, 280, 906
AciI CCGC 9 cut(s) 46, 95, 181, 207, 269, 271, 278, 473, 958
AclWI GGATC 2 cut(s) 10, 554
AcoI YGGCCR 2 cut(s) 272, 966
AcsI RAATTY 1 cut(s) 192
AdeI CACNNNGTG 1 cut(s) 140
AfaI GTAC 2 cut(s) 484, 505
AfiI CCNNNNNNNGG 5 cut(s) 457, 701, 722, 886, 943
AgsI TTSAA 8 cut(s) 177, 203, 364, 655, 745, 811, 989, 1100
AjnI CCWGG 2 cut(s) 697, 715
AluBI AGCT 8 cut(s) 24, 166, 349, 457, 574, 650, 782, 822
AluI AGCT 8 cut(s) 24, 166, 349, 457, 574, 650, 782, 822
Alw26I GTCTC 1 cut(s) 157
AlwI GGATC 2 cut(s) 10, 554
AoxI GGCC 3 cut(s) 272, 377, 966
ApeKI GCWGC 4 cut(s) 550, 980, 1087, 1090
ApoI RAATTY 1 cut(s) 192
ArsI GACNNNNNNTTYG 2 cut(s) 511, 543
AspLEI GCGC 5 cut(s) 211, 906, 930, 1068, 1087
AspS9I GGNCC 3 cut(s) 378, 877, 1019
AsuC2I CCSGG 3 cut(s) 381, 594, 1024
AsuHPI GGTGA 2 cut(s) 440, 731
AvaII GGWCC 2 cut(s) 877, 1019
BauI CACGAG 1 cut(s) 464
BbsI GAAGAC 2 cut(s) 390, 420
BbvCI CCTCAGC 2 cut(s) 20, 975
BbvI GCAGC 4 cut(s) 537, 967, 1099, 1102
BccI CCATC 1 cut(s) 253
BceAI ACGGC 1 cut(s) 501
BciT130I CCWGG 2 cut(s) 699, 717
BcnI CCSGG 3 cut(s) 381, 594, 1024
BcoDI GTCTC 1 cut(s) 157
BfaI CTAG 1 cut(s) 1082
BfmI CTRYAG 1 cut(s) 783
BfoI RGCGCY 1 cut(s) 931
BfuAI ACCTGC 3 cut(s) 886, 1007, 1084
BisI GCNGC 7 cut(s) 272, 474, 551, 959, 981, 1088, 1091
BlsI GCNGC 7 cut(s) 273, 475, 552, 960, 982, 1089, 1092
Bme1390I CCNGG 5 cut(s) 381, 594, 699, 717, 1024
Bme18I GGWCC 2 cut(s) 877, 1019
BmgT120I GGNCC 3 cut(s) 378, 877, 1019
BmiI GGNNCC 3 cut(s) 756, 878, 1021
BmrFI CCNGG 5 cut(s) 381, 594, 699, 717, 1024
BmsI GCATC 1 cut(s) 445
BpiI GAAGAC 2 cut(s) 390, 420
BpmI CTGGAG 1 cut(s) 744
Bpu10I CCTNAGC 3 cut(s) 20, 924, 975
BpuEI CTTGAG 1 cut(s) 974
BpuMI CCSGG 3 cut(s) 381, 594, 1024
BsaAI YACGTR 1 cut(s) 140
BsaJI CCNNGG 4 cut(s) 269, 698, 969, 1022
BsaXI ACNNNNNCTCC 4 cut(s) 232, 262, 538, 568
Bsc4I CCNNNNNNNGG 5 cut(s) 457, 701, 722, 886, 943
Bse1I ACTGG 2 cut(s) 49, 501
Bse3DI GCAATG 1 cut(s) 948
BseBI CCWGG 2 cut(s) 699, 717
BseDI CCNNGG 4 cut(s) 269, 698, 969, 1022
BseGI GGATG 1 cut(s) 91
BseLI CCNNNNNNNGG 5 cut(s) 457, 701, 722, 886, 943
BseMI GCAATG 1 cut(s) 948
BseMII CTCAG 4 cut(s) 34, 315, 915, 966
BseNI ACTGG 2 cut(s) 49, 501
BseRI GAGGAG 2 cut(s) 382, 559
BseXI GCAGC 4 cut(s) 537, 967, 1099, 1102
BseYI CCCAGC 1 cut(s) 457
BsgI GTGCAG 1 cut(s) 654
Bsh1236I CGCG 4 cut(s) 209, 271, 280, 906
BshFI GGCC 3 cut(s) 274, 379, 968
BsiSI CCGG 5 cut(s) 251, 292, 381, 594, 1024
BsiWI CGTACG 1 cut(s) 482
BslFI GGGAC 2 cut(s) 890, 1005
BslI CCNNNNNNNGG 5 cut(s) 457, 701, 722, 886, 943
BsmAI GTCTC 1 cut(s) 157
BsmFI GGGAC 2 cut(s) 890, 1005
BsmI GAATGC 3 cut(s) 87, 97, 110
BsnI GGCC 3 cut(s) 274, 379, 968
Bsp143I GATC 3 cut(s) 15, 559, 813
BspACI CCGC 9 cut(s) 46, 95, 181, 207, 269, 271, 278, 473, 958
BspANI GGCC 3 cut(s) 274, 379, 968
BspCNI CTCAG 4 cut(s) 33, 316, 916, 967
BspFNI CGCG 4 cut(s) 209, 271, 280, 906
BspHI TCATGA 1 cut(s) 816
BspLI GGNNCC 3 cut(s) 756, 878, 1021
BspMI ACCTGC 3 cut(s) 886, 1007, 1084
BspPI GGATC 2 cut(s) 10, 554
BspQI GCTCTTC 2 cut(s) 495, 788
BsrBI CCGCTC 1 cut(s) 958
BsrDI GCAATG 1 cut(s) 948
BsrI ACTGG 2 cut(s) 49, 501
BssECI CCNNGG 4 cut(s) 269, 698, 969, 1022
BssMI GATC 3 cut(s) 15, 559, 813
BssNAI GTATAC 1 cut(s) 707
BssSI CACGAG 1 cut(s) 464
Bst1107I GTATAC 1 cut(s) 707
Bst2BI CACGAG 1 cut(s) 464
Bst2UI CCWGG 2 cut(s) 699, 717
Bst4CI ACNGT 6 cut(s) 32, 235, 372, 508, 739, 861
Bst6I CTCTTC 3 cut(s) 409, 495, 788
BstAPI GCANNNNNTGC 1 cut(s) 901
BstBAI YACGTR 1 cut(s) 140
BstC8I GCNNGC 1 cut(s) 269
BstDEI CTNAG 4 cut(s) 20, 324, 924, 975
BstDSI CCRYGG 1 cut(s) 269
BstENI CCTNNNNNAGG 1 cut(s) 720
BstF5I GGATG 1 cut(s) 91
BstFNI CGCG 4 cut(s) 209, 271, 280, 906
BstH2I RGCGCY 1 cut(s) 931
BstHHI GCGC 5 cut(s) 211, 906, 930, 1068, 1087
BstKTI GATC 3 cut(s) 18, 562, 816
BstMAI GTCTC 1 cut(s) 157
BstMBI GATC 3 cut(s) 15, 559, 813
BstMWI GCNNNNNNNGC 4 cut(s) 277, 320, 901, 980
BstNI CCWGG 2 cut(s) 699, 717
BstNSI RCATGY 1 cut(s) 691
BstSCI CCNGG 5 cut(s) 379, 592, 697, 715, 1022
BstSFI CTRYAG 1 cut(s) 783
BstUI CGCG 4 cut(s) 209, 271, 280, 906
BstV1I GCAGC 4 cut(s) 537, 967, 1099, 1102
BstV2I GAAGAC 2 cut(s) 390, 420
BstZ17I GTATAC 1 cut(s) 707
BsuRI GGCC 3 cut(s) 274, 379, 968
BtgI CCRYGG 1 cut(s) 269
BtsCI GGATG 1 cut(s) 91
BtsIMutI CAGTG 1 cut(s) 1119
BveI ACCTGC 3 cut(s) 886, 1007, 1084
Cac8I GCNNGC 1 cut(s) 269
CciI TCATGA 1 cut(s) 816
CfoI GCGC 5 cut(s) 211, 906, 930, 1068, 1087
Cfr13I GGNCC 3 cut(s) 378, 877, 1019
Cfr42I CCGCGG 1 cut(s) 272
CseI GACGC 2 cut(s) 542, 680
Csp6I GTAC 2 cut(s) 483, 504
CspCI CAANNNNNGTGG 2 cut(s) 297, 332
CviAII CATG 3 cut(s) 338, 688, 817
CviQI GTAC 2 cut(s) 483, 504
DdeI CTNAG 4 cut(s) 20, 324, 924, 975
DpnI GATC 3 cut(s) 17, 561, 815
DpnII GATC 3 cut(s) 15, 559, 813
DraI TTTAAA 1 cut(s) 9
DraIII CACNNNGTG 1 cut(s) 140
EaeI YGGCCR 2 cut(s) 272, 966
Eam1104I CTCTTC 3 cut(s) 409, 495, 788
EarI CTCTTC 3 cut(s) 409, 495, 788
Eco47I GGWCC 2 cut(s) 877, 1019
EcoNI CCTNNNNNAGG 1 cut(s) 720
EcoO109I RGGNCCY 1 cut(s) 1019
EcoRI GAATTC 1 cut(s) 192
EcoRII CCWGG 2 cut(s) 697, 715
EcoT22I ATGCAT 1 cut(s) 438
FaeI CATG 3 cut(s) 341, 691, 820
FalI AAGNNNNNCTT 2 cut(s) 333, 365
FaqI GGGAC 2 cut(s) 890, 1005
FatI CATG 3 cut(s) 337, 687, 816
FauI CCCGC 1 cut(s) 276
FauNDI CATATG 1 cut(s) 586
FblI GTMKAC 3 cut(s) 305, 706, 786
Fnu4HI GCNGC 7 cut(s) 272, 474, 551, 959, 981, 1088, 1091
FokI GGATG 1 cut(s) 78
Fsp4HI GCNGC 7 cut(s) 272, 474, 551, 959, 981, 1088, 1091
FspBI CTAG 1 cut(s) 1082
GlaI GCGC 5 cut(s) 210, 905, 929, 1067, 1086
GluI GCNGC 7 cut(s) 272, 474, 551, 959, 981, 1088, 1091
GsaI CCCAGC 1 cut(s) 461
GsuI CTGGAG 1 cut(s) 744
HaeII RGCGCY 1 cut(s) 931
HaeIII GGCC 3 cut(s) 274, 379, 968
HapII CCGG 5 cut(s) 251, 292, 381, 594, 1024
HgaI GACGC 2 cut(s) 542, 680
HhaI GCGC 5 cut(s) 211, 906, 930, 1068, 1087
Hin1II CATG 3 cut(s) 341, 691, 820
Hin6I GCGC 5 cut(s) 209, 904, 928, 1066, 1085
HinP1I GCGC 5 cut(s) 209, 904, 928, 1066, 1085
HincII GTYRAC 1 cut(s) 306
HindII GTYRAC 1 cut(s) 306
HindIII AAGCTT 1 cut(s) 347
HinfI GANTC 4 cut(s) 355, 467, 989, 1109
HpaII CCGG 5 cut(s) 251, 292, 381, 594, 1024
HphI GGTGA 2 cut(s) 440, 731
Hpy166II GTNNAC 5 cut(s) 306, 448, 599, 707, 787
Hpy188I TCNGA 2 cut(s) 56, 543
Hpy188III TCNNGA 9 cut(s) 72, 464, 557, 607, 761, 811, 817, 917, 993
Hpy8I GTNNAC 5 cut(s) 306, 448, 599, 707, 787
HpyAV CCTTC 6 cut(s) 73, 183, 335, 716, 1031, 1094
HpyCH4III ACNGT 6 cut(s) 32, 235, 372, 508, 739, 861
HpyCH4IV ACGT 2 cut(s) 139, 481
HpyCH4V TGCA 5 cut(s) 436, 614, 671, 734, 941
HpyF10VI GCNNNNNNNGC 4 cut(s) 277, 320, 901, 980
HpyF3I CTNAG 4 cut(s) 20, 324, 924, 975
HpySE526I ACGT 2 cut(s) 139, 481
Hsp92II CATG 3 cut(s) 341, 691, 820
HspAI GCGC 5 cut(s) 209, 904, 928, 1066, 1085
KspI CCGCGG 1 cut(s) 272
Kzo9I GATC 3 cut(s) 15, 559, 813
LguI GCTCTTC 2 cut(s) 495, 788
LmnI GCTCC 1 cut(s) 718
Lsp1109I GCAGC 4 cut(s) 537, 967, 1099, 1102
LweI GCATC 1 cut(s) 445
MaeI CTAG 1 cut(s) 1082
MaeII ACGT 2 cut(s) 139, 481
MaeIII GTNAC 4 cut(s) 38, 461, 517, 683
MalI GATC 3 cut(s) 17, 561, 815
MbiI CCGCTC 1 cut(s) 958
MboI GATC 3 cut(s) 15, 559, 813
MboII GAAGA 5 cut(s) 390, 396, 420, 482, 805
MfeI CAATTG 2 cut(s) 615, 962
MluCI AATT 3 cut(s) 192, 615, 962
MlyI GAGTC 2 cut(s) 364, 476
MmeI TCCRAC 1 cut(s) 79
Mph1103I ATGCAT 1 cut(s) 438
MseI TTAA 4 cut(s) 8, 26, 804, 824
MslI CAYNNNNRTG 1 cut(s) 441
MspA1I CMGCKG 3 cut(s) 271, 457, 782
MspI CCGG 5 cut(s) 251, 292, 381, 594, 1024
MspR9I CCNGG 5 cut(s) 381, 594, 699, 717, 1024
MunI CAATTG 2 cut(s) 615, 962
Mva1269I GAATGC 3 cut(s) 87, 97, 110
MvaI CCWGG 2 cut(s) 699, 717
MvnI CGCG 4 cut(s) 209, 271, 280, 906
MwoI GCNNNNNNNGC 4 cut(s) 277, 320, 901, 980
NciI CCSGG 3 cut(s) 381, 594, 1024
NdeI CATATG 1 cut(s) 586
NdeII GATC 3 cut(s) 15, 559, 813
NlaIII CATG 3 cut(s) 341, 691, 820
NlaIV GGNNCC 3 cut(s) 756, 878, 1021
NmeAIII GCCGAG 1 cut(s) 994
NmuCI GTSAC 2 cut(s) 461, 517
NsiI ATGCAT 1 cut(s) 438
NspI RCATGY 1 cut(s) 691
PagI TCATGA 1 cut(s) 816
PciSI GCTCTTC 2 cut(s) 495, 788
PctI GAATGC 3 cut(s) 87, 97, 110
PfeI GAWTC 2 cut(s) 989, 1109
Pfl23II CGTACG 1 cut(s) 482
PflFI GACNNNGTC 3 cut(s) 424, 523, 881
PflMI CCANNNNNTGG 2 cut(s) 457, 886
PkrI GCNGC 7 cut(s) 273, 475, 552, 960, 982, 1089, 1092
PleI GAGTC 2 cut(s) 363, 475
PpsI GAGTC 2 cut(s) 363, 475
Ppu21I YACGTR 1 cut(s) 140
PpuMI RGGWCCY 1 cut(s) 1019
Psp5II RGGWCCY 1 cut(s) 1019
Psp6I CCWGG 2 cut(s) 697, 715
PspFI CCCAGC 1 cut(s) 457
PspGI CCWGG 2 cut(s) 697, 715
PspLI CGTACG 1 cut(s) 482
PspN4I GGNNCC 3 cut(s) 756, 878, 1021
PspPI GGNCC 3 cut(s) 378, 877, 1019
PspPPI RGGWCCY 1 cut(s) 1019
PsyI GACNNNGTC 3 cut(s) 424, 523, 881
PvuII CAGCTG 2 cut(s) 457, 782
RsaI GTAC 2 cut(s) 484, 505
RsaNI GTAC 2 cut(s) 483, 504
RseI CAYNNNNRTG 1 cut(s) 441
SacII CCGCGG 1 cut(s) 272
SalI GTCGAC 1 cut(s) 304
SapI GCTCTTC 2 cut(s) 495, 788
SaqAI TTAA 4 cut(s) 8, 26, 804, 824
SatI GCNGC 7 cut(s) 272, 474, 551, 959, 981, 1088, 1091
Sau3AI GATC 3 cut(s) 15, 559, 813
Sau96I GGNCC 3 cut(s) 378, 877, 1019
SchI GAGTC 2 cut(s) 364, 476
ScrFI CCNGG 5 cut(s) 381, 594, 699, 717, 1024
SfaNI GCATC 1 cut(s) 445
SfcI CTRYAG 1 cut(s) 783
Sfr303I CCGCGG 1 cut(s) 272
SgrBI CCGCGG 1 cut(s) 272
SinI GGWCC 2 cut(s) 877, 1019
SmiMI CAYNNNNRTG 1 cut(s) 441
SmlI CTYRAG 1 cut(s) 953
SmoI CTYRAG 1 cut(s) 953
Sse9I AATT 3 cut(s) 192, 615, 962
SsiI CCGC 9 cut(s) 46, 95, 181, 207, 269, 271, 278, 473, 958
SspMI CTAG 1 cut(s) 1082
StyD4I CCNGG 5 cut(s) 379, 592, 697, 715, 1022
TaaI ACNGT 6 cut(s) 32, 235, 372, 508, 739, 861
TaiI ACGT 2 cut(s) 142, 484
TaqI TCGA 2 cut(s) 305, 419
TasI AATT 3 cut(s) 192, 615, 962
TauI GCSGC 3 cut(s) 274, 476, 961
TfiI GAWTC 2 cut(s) 989, 1109
Tru1I TTAA 4 cut(s) 8, 26, 804, 824
Tru9I TTAA 4 cut(s) 8, 26, 804, 824
TscAI CASTG 1 cut(s) 1119
TseFI GTSAC 2 cut(s) 461, 517
TseI GCWGC 4 cut(s) 550, 980, 1087, 1090
Tsp45I GTSAC 2 cut(s) 461, 517
TspDTI ATGAA 5 cut(s) 80, 354, 482, 603, 1068
TspRI CASTG 1 cut(s) 1119
Tth111I GACNNNGTC 3 cut(s) 424, 523, 881
Van91I CCANNNNNTGG 2 cut(s) 457, 886
VpaK11BI GGWCC 2 cut(s) 877, 1019
XagI CCTNNNNNAGG 1 cut(s) 720
XapI RAATTY 1 cut(s) 192
XceI RCATGY 1 cut(s) 691
XmiI GTMKAC 3 cut(s) 305, 706, 786
XspI CTAG 1 cut(s) 1082
Zsp2I ATGCAT 1 cut(s) 438
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.