Cyclic nucleotide-gated ion channel 1-like
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_4g19150 FvH4_4g19150 FvH4_4g19150 FvH4_4g19150 FvH4_4g19150 FvH4_4g19150 FvH4_4g19150 |
| prunus_persica | Prupe.4G109500_v2.0.a1 Prupe.4G109500_v2.0.a1 Prupe.4G109500_v2.0.a1 Prupe.4G109600_v2.0.a1 Prupe.4G109900_v2.0.a1 Prupe.4G263700_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr4g0424091 RchiOBHm_Chr5g0019831 RchiOBHm_Chr5g0020211 RchiOBHm_Chr5g0020221 |
| rosa_laevigata | RLG00000007504 |
| rosa_multiflora | Rmu_co8478429.1_g000001 Rmu_sc0002260.1_g000052 Rmu_sc0002260.1_g000058 Rmu_sc0002260.1_g000060 |
| rosa_roxburghii | Rroxscaffold_5G00366100 |
| rosa_rugosa | Rorug04G0192900 Rorug04G0193000 Rorug04G0193100 Rorug04G0193100 Rorug04G0193100 Rorug07G0254600 |
| rosa_samantha | Rh4AG251200 Rh4BG256200 Rh4BG256300 Rh4CG266700 Rh4DG250800 Rh4DG250900 Rh5AG148300 Rh5AG366200 Rh5AG366300 Rh5CG159200 |
| rosa_wichuraiana | Rw4G021640 Rw5G013110 Rw5G013120 Rw5G034340 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1282 |
| Acc36I | ACCTGC | 2 cut(s) | 803, 1282 |
| Acc65I | GGTACC | 1 cut(s) | 489 |
| AccB1I | GGYRCC | 1 cut(s) | 489 |
| AccBSI | CCGCTC | 1 cut(s) | 34 |
| AccI | GTMKAC | 3 cut(s) | 213, 229, 1149 |
| AccIII | TCCGGA | 1 cut(s) | 1515 |
| AciI | CCGC | 3 cut(s) | 32, 135, 1244 |
| AclWI | GGATC | 1 cut(s) | 23 |
| AcoI | YGGCCR | 1 cut(s) | 316 |
| AcsI | RAATTY | 1 cut(s) | 916 |
| AfaI | GTAC | 8 cut(s) | 201, 372, 404, 474, 491, 580, 1232, 1298 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 168, 268, 1291 |
| AgsI | TTSAA | 7 cut(s) | 292, 442, 506, 922, 1069, 1241, 1483 |
| AhlI | ACTAGT | 1 cut(s) | 232 |
| AjnI | CCWGG | 1 cut(s) | 295 |
| AluBI | AGCT | 7 cut(s) | 107, 219, 434, 557, 668, 780, 1207 |
| AluI | AGCT | 7 cut(s) | 107, 219, 434, 557, 668, 780, 1207 |
| Alw21I | GWGCWC | 1 cut(s) | 124 |
| Alw26I | GTCTC | 2 cut(s) | 582, 1127 |
| AlwI | GGATC | 1 cut(s) | 23 |
| Aor13HI | TCCGGA | 1 cut(s) | 1515 |
| AoxI | GGCC | 2 cut(s) | 316, 1282 |
| ApeKI | GCWGC | 9 cut(s) | 101, 104, 253, 635, 871, 1316, 1319, 1388, 1454 |
| ApoI | RAATTY | 1 cut(s) | 916 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 901, 933 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 338, 669 |
| Asp718I | GGTACC | 1 cut(s) | 489 |
| AsuC2I | CCSGG | 1 cut(s) | 163 |
| AsuHPI | GGTGA | 3 cut(s) | 1192, 1273, 1435 |
| AsuII | TTCGAA | 2 cut(s) | 1159, 1218 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 944, 977 |
| BanI | GGYRCC | 1 cut(s) | 489 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1140, 1172 |
| BauI | CACGAG | 2 cut(s) | 585, 685 |
| BbsI | GAAGAC | 3 cut(s) | 914, 935, 1227 |
| Bbv12I | GWGCWC | 1 cut(s) | 124 |
| BbvI | GCAGC | 9 cut(s) | 88, 116, 240, 622, 883, 1303, 1306, 1400, 1466 |
| BccI | CCATC | 2 cut(s) | 266, 1161 |
| BceAI | ACGGC | 1 cut(s) | 224 |
| BciT130I | CCWGG | 1 cut(s) | 297 |
| BciVI | GTATCC | 1 cut(s) | 186 |
| BcnI | CCSGG | 1 cut(s) | 163 |
| BcoDI | GTCTC | 2 cut(s) | 582, 1127 |
| BcuI | ACTAGT | 1 cut(s) | 232 |
| BfaI | CTAG | 4 cut(s) | 233, 465, 602, 1308 |
| BfmI | CTRYAG | 5 cut(s) | 102, 214, 532, 1275, 1320 |
| BfuAI | ACCTGC | 2 cut(s) | 803, 1282 |
| BfuI | GTATCC | 1 cut(s) | 186 |
| BmcAI | AGTACT | 1 cut(s) | 580 |
| Bme1390I | CCNGG | 2 cut(s) | 163, 297 |
| BmiI | GGNNCC | 1 cut(s) | 491 |
| BmrFI | CCNGG | 2 cut(s) | 163, 297 |
| BmsI | GCATC | 4 cut(s) | 121, 987, 1126, 1515 |
| BpiI | GAAGAC | 3 cut(s) | 914, 935, 1227 |
| BpmI | CTGGAG | 1 cut(s) | 1097 |
| Bpu14I | TTCGAA | 2 cut(s) | 1159, 1218 |
| BpuEI | CTTGAG | 2 cut(s) | 115, 1277 |
| BpuMI | CCSGG | 1 cut(s) | 163 |
| BsaI | GGTCTC | 1 cut(s) | 1127 |
| BsaWI | WCCGGW | 1 cut(s) | 1515 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 168, 268, 1291 |
| Bse1I | ACTGG | 2 cut(s) | 50, 826 |
| BseAI | TCCGGA | 1 cut(s) | 1515 |
| BseBI | CCWGG | 1 cut(s) | 297 |
| BseGI | GGATG | 5 cut(s) | 258, 554, 969, 978, 1174 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 168, 268, 1291 |
| BseNI | ACTGG | 2 cut(s) | 50, 826 |
| BseRI | GAGGAG | 1 cut(s) | 917 |
| BseXI | GCAGC | 9 cut(s) | 88, 116, 240, 622, 883, 1303, 1306, 1400, 1466 |
| BsgI | GTGCAG | 3 cut(s) | 564, 878, 1310 |
| BshFI | GGCC | 2 cut(s) | 318, 1284 |
| BshNI | GGYRCC | 1 cut(s) | 489 |
| BsiHKAI | GWGCWC | 1 cut(s) | 124 |
| BsiSI | CCGG | 2 cut(s) | 162, 1516 |
| BslFI | GGGAC | 1 cut(s) | 1380 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 168, 268, 1291 |
| BsmAI | GTCTC | 2 cut(s) | 582, 1127 |
| BsmFI | GGGAC | 1 cut(s) | 1380 |
| BsmI | GAATGC | 1 cut(s) | 148 |
| BsnI | GGCC | 2 cut(s) | 318, 1284 |
| Bso31I | GGTCTC | 1 cut(s) | 1127 |
| Bsp119I | TTCGAA | 2 cut(s) | 1159, 1218 |
| Bsp1286I | GDGCHC | 1 cut(s) | 124 |
| Bsp13I | TCCGGA | 1 cut(s) | 1515 |
| Bsp1407I | TGTACA | 1 cut(s) | 199 |
| Bsp143I | GATC | 4 cut(s) | 28, 689, 970, 1405 |
| BspACI | CCGC | 3 cut(s) | 32, 135, 1244 |
| BspANI | GGCC | 2 cut(s) | 318, 1284 |
| BspEI | TCCGGA | 1 cut(s) | 1515 |
| BspLI | GGNNCC | 1 cut(s) | 491 |
| BspMAI | CTGCAG | 2 cut(s) | 106, 1324 |
| BspMI | ACCTGC | 2 cut(s) | 803, 1282 |
| BspPI | GGATC | 1 cut(s) | 23 |
| BspQI | GCTCTTC | 1 cut(s) | 41 |
| BspT104I | TTCGAA | 2 cut(s) | 1159, 1218 |
| BspT107I | GGYRCC | 1 cut(s) | 489 |
| BspTNI | GGTCTC | 1 cut(s) | 1127 |
| BsrBI | CCGCTC | 1 cut(s) | 34 |
| BsrGI | TGTACA | 1 cut(s) | 199 |
| BsrI | ACTGG | 2 cut(s) | 50, 826 |
| BssMI | GATC | 4 cut(s) | 28, 689, 970, 1405 |
| BssNAI | GTATAC | 1 cut(s) | 230 |
| BssSI | CACGAG | 2 cut(s) | 585, 685 |
| Bst1107I | GTATAC | 1 cut(s) | 230 |
| Bst2BI | CACGAG | 2 cut(s) | 585, 685 |
| Bst2UI | CCWGG | 1 cut(s) | 297 |
| Bst4CI | ACNGT | 6 cut(s) | 267, 331, 389, 578, 722, 1276 |
| Bst6I | CTCTTC | 1 cut(s) | 41 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1334 |
| BstAUI | TGTACA | 1 cut(s) | 199 |
| BstBI | TTCGAA | 2 cut(s) | 1159, 1218 |
| BstC8I | GCNNGC | 4 cut(s) | 120, 524, 827, 1314 |
| BstDEI | CTNAG | 1 cut(s) | 746 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1289 |
| BstF5I | GGATG | 5 cut(s) | 258, 554, 969, 978, 1174 |
| BstKTI | GATC | 4 cut(s) | 31, 692, 973, 1408 |
| BstMAI | GTCTC | 2 cut(s) | 582, 1127 |
| BstMBI | GATC | 4 cut(s) | 28, 689, 970, 1405 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 140, 1325, 1334 |
| BstNI | CCWGG | 1 cut(s) | 297 |
| BstNSI | RCATGY | 2 cut(s) | 878, 1316 |
| BstSCI | CCNGG | 2 cut(s) | 161, 295 |
| BstSFI | CTRYAG | 5 cut(s) | 102, 214, 532, 1275, 1320 |
| BstV1I | GCAGC | 9 cut(s) | 88, 116, 240, 622, 883, 1303, 1306, 1400, 1466 |
| BstV2I | GAAGAC | 3 cut(s) | 914, 935, 1227 |
| BstX2I | RGATCY | 1 cut(s) | 28 |
| BstYI | RGATCY | 1 cut(s) | 28 |
| BstZ17I | GTATAC | 1 cut(s) | 230 |
| BsuI | GTATCC | 1 cut(s) | 186 |
| BsuRI | GGCC | 2 cut(s) | 318, 1284 |
| BtgZI | GCGATG | 1 cut(s) | 1406 |
| BtsCI | GGATG | 5 cut(s) | 258, 554, 969, 978, 1174 |
| BtsI | GCAGTG | 2 cut(s) | 24, 143 |
| BtsIMutI | CAGTG | 2 cut(s) | 24, 143 |
| BveI | ACCTGC | 2 cut(s) | 803, 1282 |
| Cac8I | GCNNGC | 4 cut(s) | 120, 524, 827, 1314 |
| Csp6I | GTAC | 8 cut(s) | 200, 371, 403, 473, 490, 579, 1231, 1297 |
| CviAII | CATG | 8 cut(s) | 457, 519, 875, 974, 1129, 1201, 1313, 1403 |
| CviQI | GTAC | 8 cut(s) | 200, 371, 403, 473, 490, 579, 1231, 1297 |
| DdeI | CTNAG | 1 cut(s) | 746 |
| DpnI | GATC | 4 cut(s) | 30, 691, 972, 1407 |
| DpnII | GATC | 4 cut(s) | 28, 689, 970, 1405 |
| EaeI | YGGCCR | 1 cut(s) | 316 |
| Eam1104I | CTCTTC | 1 cut(s) | 41 |
| EarI | CTCTTC | 1 cut(s) | 41 |
| Eco147I | AGGCCT | 1 cut(s) | 1284 |
| Eco31I | GGTCTC | 1 cut(s) | 1127 |
| Eco32I | GATATC | 1 cut(s) | 516 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1289 |
| EcoRII | CCWGG | 1 cut(s) | 295 |
| EcoRV | GATATC | 1 cut(s) | 516 |
| FaeI | CATG | 8 cut(s) | 460, 522, 878, 977, 1132, 1204, 1316, 1406 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1061, 1093 |
| FaqI | GGGAC | 1 cut(s) | 1380 |
| FatI | CATG | 8 cut(s) | 456, 518, 874, 973, 1128, 1200, 1312, 1402 |
| FblI | GTMKAC | 3 cut(s) | 213, 229, 1149 |
| FokI | GGATG | 5 cut(s) | 245, 561, 965, 976, 1181 |
| FspBI | CTAG | 4 cut(s) | 233, 465, 602, 1308 |
| GsuI | CTGGAG | 1 cut(s) | 1097 |
| HaeIII | GGCC | 2 cut(s) | 318, 1284 |
| HapII | CCGG | 2 cut(s) | 162, 1516 |
| Hin1II | CATG | 8 cut(s) | 460, 522, 878, 977, 1132, 1204, 1316, 1406 |
| HincII | GTYRAC | 1 cut(s) | 1305 |
| HindII | GTYRAC | 1 cut(s) | 1305 |
| HinfI | GANTC | 4 cut(s) | 681, 735, 763, 1094 |
| HpaII | CCGG | 2 cut(s) | 162, 1516 |
| HphI | GGTGA | 3 cut(s) | 1192, 1273, 1435 |
| Hpy166II | GTNNAC | 6 cut(s) | 214, 230, 334, 1150, 1297, 1305 |
| Hpy188I | TCNGA | 3 cut(s) | 393, 419, 740 |
| Hpy188III | TCNNGA | 6 cut(s) | 306, 678, 685, 693, 986, 1516 |
| Hpy8I | GTNNAC | 6 cut(s) | 214, 230, 334, 1150, 1297, 1305 |
| HpyAV | CCTTC | 7 cut(s) | 939, 1118, 1274, 1341, 1346, 1432, 1468 |
| HpyCH4III | ACNGT | 6 cut(s) | 267, 331, 389, 578, 722, 1276 |
| HpyCH4IV | ACGT | 1 cut(s) | 508 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 140, 1325, 1334 |
| HpyF3I | CTNAG | 1 cut(s) | 746 |
| HpySE526I | ACGT | 1 cut(s) | 508 |
| Hsp92II | CATG | 8 cut(s) | 460, 522, 878, 977, 1132, 1204, 1316, 1406 |
| Kpn2I | TCCGGA | 1 cut(s) | 1515 |
| KpnI | GGTACC | 1 cut(s) | 493 |
| Kzo9I | GATC | 4 cut(s) | 28, 689, 970, 1405 |
| LguI | GCTCTTC | 1 cut(s) | 41 |
| Lsp1109I | GCAGC | 9 cut(s) | 88, 116, 240, 622, 883, 1303, 1306, 1400, 1466 |
| LweI | GCATC | 4 cut(s) | 121, 987, 1126, 1515 |
| MaeI | CTAG | 4 cut(s) | 233, 465, 602, 1308 |
| MaeII | ACGT | 1 cut(s) | 508 |
| MaeIII | GTNAC | 3 cut(s) | 325, 572, 749 |
| MalI | GATC | 4 cut(s) | 30, 691, 972, 1407 |
| MbiI | CCGCTC | 1 cut(s) | 34 |
| MboI | GATC | 4 cut(s) | 28, 689, 970, 1405 |
| MfeI | CAATTG | 1 cut(s) | 804 |
| MflI | RGATCY | 1 cut(s) | 28 |
| MhlI | GDGCHC | 1 cut(s) | 124 |
| MlyI | GAGTC | 1 cut(s) | 1088 |
| MmeI | TCCRAC | 2 cut(s) | 728, 873 |
| MroI | TCCGGA | 1 cut(s) | 1515 |
| MroXI | GAANNNNTTC | 2 cut(s) | 338, 669 |
| MseI | TTAA | 2 cut(s) | 645, 1525 |
| MspI | CCGG | 2 cut(s) | 162, 1516 |
| MspR9I | CCNGG | 2 cut(s) | 163, 297 |
| MunI | CAATTG | 1 cut(s) | 804 |
| Mva1269I | GAATGC | 1 cut(s) | 148 |
| MvaI | CCWGG | 1 cut(s) | 297 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 140, 1325, 1334 |
| NciI | CCSGG | 1 cut(s) | 163 |
| NdeII | GATC | 4 cut(s) | 28, 689, 970, 1405 |
| NlaIII | CATG | 8 cut(s) | 460, 522, 878, 977, 1132, 1204, 1316, 1406 |
| NlaIV | GGNNCC | 1 cut(s) | 491 |
| NmeAIII | GCCGAG | 1 cut(s) | 294 |
| NmuCI | GTSAC | 1 cut(s) | 572 |
| NspI | RCATGY | 2 cut(s) | 878, 1316 |
| NspV | TTCGAA | 2 cut(s) | 1159, 1218 |
| PaeI | GCATGC | 1 cut(s) | 1316 |
| PaqCI | CACCTGC | 1 cut(s) | 1282 |
| PceI | AGGCCT | 1 cut(s) | 1284 |
| PciSI | GCTCTTC | 1 cut(s) | 41 |
| PctI | GAATGC | 1 cut(s) | 148 |
| PdmI | GAANNNNTTC | 2 cut(s) | 338, 669 |
| PfeI | GAWTC | 3 cut(s) | 681, 735, 763 |
| PflFI | GACNNNGTC | 1 cut(s) | 934 |
| PleI | GAGTC | 1 cut(s) | 1088 |
| PpsI | GAGTC | 1 cut(s) | 1088 |
| Psp6I | CCWGG | 1 cut(s) | 295 |
| PspGI | CCWGG | 1 cut(s) | 295 |
| PspN4I | GGNNCC | 1 cut(s) | 491 |
| PstI | CTGCAG | 2 cut(s) | 106, 1324 |
| PsuI | RGATCY | 1 cut(s) | 28 |
| PsyI | GACNNNGTC | 1 cut(s) | 934 |
| RsaI | GTAC | 8 cut(s) | 201, 372, 404, 474, 491, 580, 1232, 1298 |
| RsaNI | GTAC | 8 cut(s) | 200, 371, 403, 473, 490, 579, 1231, 1297 |
| SapI | GCTCTTC | 1 cut(s) | 41 |
| SaqAI | TTAA | 2 cut(s) | 645, 1525 |
| Sau3AI | GATC | 4 cut(s) | 28, 689, 970, 1405 |
| ScaI | AGTACT | 1 cut(s) | 580 |
| SchI | GAGTC | 1 cut(s) | 1088 |
| ScrFI | CCNGG | 2 cut(s) | 163, 297 |
| SduI | GDGCHC | 1 cut(s) | 124 |
| SfaNI | GCATC | 4 cut(s) | 121, 987, 1126, 1515 |
| SfcI | CTRYAG | 5 cut(s) | 102, 214, 532, 1275, 1320 |
| SfuI | TTCGAA | 2 cut(s) | 1159, 1218 |
| SmlI | CTYRAG | 2 cut(s) | 94, 1256 |
| SmoI | CTYRAG | 2 cut(s) | 94, 1256 |
| SpeI | ACTAGT | 1 cut(s) | 232 |
| SphI | GCATGC | 1 cut(s) | 1316 |
| SseBI | AGGCCT | 1 cut(s) | 1284 |
| SsiI | CCGC | 3 cut(s) | 32, 135, 1244 |
| SspI | AATATT | 2 cut(s) | 657, 1003 |
| SspMI | CTAG | 4 cut(s) | 233, 465, 602, 1308 |
| StuI | AGGCCT | 1 cut(s) | 1284 |
| StyD4I | CCNGG | 2 cut(s) | 161, 295 |
| TaaI | ACNGT | 6 cut(s) | 267, 331, 389, 578, 722, 1276 |
| TaiI | ACGT | 1 cut(s) | 511 |
| TaqI | TCGA | 5 cut(s) | 430, 553, 938, 1159, 1218 |
| TatI | WGTACW | 5 cut(s) | 199, 370, 472, 578, 1230 |
| TauI | GCSGC | 1 cut(s) | 137 |
| TfiI | GAWTC | 3 cut(s) | 681, 735, 763 |
| Tru1I | TTAA | 2 cut(s) | 645, 1525 |
| Tru9I | TTAA | 2 cut(s) | 645, 1525 |
| TscAI | CASTG | 2 cut(s) | 24, 150 |
| TseFI | GTSAC | 1 cut(s) | 572 |
| TseI | GCWGC | 9 cut(s) | 101, 104, 253, 635, 871, 1316, 1319, 1388, 1454 |
| Tsp45I | GTSAC | 1 cut(s) | 572 |
| TspDTI | ATGAA | 4 cut(s) | 426, 1068, 1185, 1217 |
| TspGWI | ACGGA | 1 cut(s) | 168 |
| TspRI | CASTG | 2 cut(s) | 24, 150 |
| Tth111I | GACNNNGTC | 1 cut(s) | 934 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1289 |
| XapI | RAATTY | 1 cut(s) | 916 |
| XceI | RCATGY | 2 cut(s) | 878, 1316 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 265 |
| XmiI | GTMKAC | 3 cut(s) | 213, 229, 1149 |
| XmnI | GAANNNNTTC | 2 cut(s) | 338, 669 |
| XspI | CTAG | 4 cut(s) | 233, 465, 602, 1308 |
| ZrmI | AGTACT | 1 cut(s) | 580 |