Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0002268

Physical Location & Seq

Genomic Coordinates Forward (+)

52101470 .. 52104393

Gene Structure 2924 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG266700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGTGCTAGATTTGGCAGCCTCTCTAAATTATATATTACGGTCAATCTATCTAATCCCATGGCCGTATCTCAAGCCTATCTCTCCAAAGCATGCATTTTTCTTCGACAGATTCTTAATTTCAGTTCAGAATTGCAGCAGAGATATTAAGTGTCAAAAAAAAGTGGAAGCATTTGCTCTCACGGCCGAGAACTTGAGACAGGTACTCTCTGAAAATAAAATCAAGTGGGATCAGGGTTTCAACAATTGTGCCGGTGCGTTCACTGCTGGTACTACTGAGCATAGAGCACTGGAACAGATTATCCAGGTTCAAGGTGACATGCTTCGTGAGCAGCTGCTGAATCTTGTTCAAAATAGCATGCTCCAATTTCGTGATGACATGACAGAGTTTTTAGCAAAATCCGGATATCCAGGAACACCTCCACCTGCACCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

144

Amino Acids

16.41

Weight (kDa)

7.71

Isoelectric Point (pI)

31.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002268)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g19150 FvH4_4g19150 FvH4_4g19150 FvH4_4g19150 FvH4_4g19150 FvH4_4g19150 FvH4_4g19150
prunus_persica	Prupe.4G109500_v2.0.a1 Prupe.4G109500_v2.0.a1 Prupe.4G109500_v2.0.a1 Prupe.4G109600_v2.0.a1 Prupe.4G109900_v2.0.a1 Prupe.4G263700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0424091 RchiOBHm_Chr5g0019831 RchiOBHm_Chr5g0020211 RchiOBHm_Chr5g0020221
rosa_laevigata	RLG00000007504
rosa_multiflora	Rmu_co8478429.1_g000001 Rmu_sc0002260.1_g000052 Rmu_sc0002260.1_g000058 Rmu_sc0002260.1_g000060
rosa_roxburghii	Rroxscaffold_5G00366100
rosa_rugosa	Rorug04G0192900 Rorug04G0193000 Rorug04G0193100 Rorug04G0193100 Rorug04G0193100 Rorug07G0254600
rosa_samantha	Rh4AG251200 Rh4BG256200 Rh4BG256300 Rh4CG266700 Rh4DG250800 Rh4DG250900 Rh5AG148300 Rh5AG366200 Rh5AG366300 Rh5CG159200
rosa_wichuraiana	Rw4G021640 Rw5G013110 Rw5G013120 Rw5G034340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	401
AclWI	GGATC	1 cut(s)	237
AcoI	YGGCCR	2 cut(s)	62, 183
AfaI	GTAC	2 cut(s)	204, 271
AgsI	TTSAA	3 cut(s)	241, 311, 350
AjnI	CCWGG	2 cut(s)	303, 409
AloI	GAACNNNNNNTCC	2 cut(s)	285, 317
AluBI	AGCT	1 cut(s)	334
AluI	AGCT	1 cut(s)	334
Alw21I	GWGCWC	1 cut(s)	289
Alw26I	GTCTC	1 cut(s)	190
AlwI	GGATC	1 cut(s)	237
AlwNI	CAGNNNCTG	1 cut(s)	337
Aor13HI	TCCGGA	1 cut(s)	401
AoxI	GGCC	2 cut(s)	62, 183
ApeKI	GCWGC	4 cut(s)	17, 135, 331, 334
AsuHPI	GGTGA	1 cut(s)	326
Bbv12I	GWGCWC	1 cut(s)	289
BbvI	GCAGC	4 cut(s)	29, 147, 321, 343
BceAI	ACGGC	2 cut(s)	49, 198
BciT130I	CCWGG	2 cut(s)	305, 411
BcoDI	GTCTC	1 cut(s)	190
BfaI	CTAG	1 cut(s)	8
BisI	GCNGC	4 cut(s)	18, 136, 332, 335
BlsI	GCNGC	4 cut(s)	19, 137, 333, 336
Bme1390I	CCNGG	2 cut(s)	305, 411
BmrFI	CCNGG	2 cut(s)	305, 411
BpuEI	CTTGAG	2 cut(s)	56, 214
BsaJI	CCNNGG	1 cut(s)	59
BsaWI	WCCGGW	1 cut(s)	401
Bse118I	RCCGGY	1 cut(s)	251
Bse1I	ACTGG	1 cut(s)	294
BseAI	TCCGGA	1 cut(s)	401
BseBI	CCWGG	2 cut(s)	305, 411
BseDI	CCNNGG	1 cut(s)	59
BseMII	CTCAG	1 cut(s)	267
BseNI	ACTGG	1 cut(s)	294
BseX3I	CGGCCG	1 cut(s)	183
BseXI	GCAGC	4 cut(s)	29, 147, 321, 343
BsgI	GTGCAG	1 cut(s)	411
Bsh1285I	CGRYCG	1 cut(s)	186
BshFI	GGCC	2 cut(s)	64, 185
BsiEI	CGRYCG	1 cut(s)	186
BsiHKAI	GWGCWC	1 cut(s)	289
BsiSI	CCGG	2 cut(s)	252, 402
BsmAI	GTCTC	1 cut(s)	190
BsnI	GGCC	2 cut(s)	64, 185
Bsp1286I	GDGCHC	1 cut(s)	289
Bsp13I	TCCGGA	1 cut(s)	401
Bsp143I	GATC	1 cut(s)	229
Bsp19I	CCATGG	1 cut(s)	59
BspANI	GGCC	2 cut(s)	64, 185
BspCNI	CTCAG	1 cut(s)	268
BspEI	TCCGGA	1 cut(s)	401
BspPI	GGATC	1 cut(s)	237
BsrFI	RCCGGY	1 cut(s)	251
BsrI	ACTGG	1 cut(s)	294
BssAI	RCCGGY	1 cut(s)	251
BssECI	CCNNGG	1 cut(s)	59
BssMI	GATC	1 cut(s)	229
BssT1I	CCWWGG	1 cut(s)	59
Bst2UI	CCWGG	2 cut(s)	305, 411
Bst4CI	ACNGT	1 cut(s)	42
BstC8I	GCNNGC	2 cut(s)	93, 359
BstDEI	CTNAG	1 cut(s)	276
BstDSI	CCRYGG	1 cut(s)	59
BstKTI	GATC	1 cut(s)	232
BstMAI	GTCTC	1 cut(s)	190
BstMBI	GATC	1 cut(s)	229
BstMCI	CGRYCG	1 cut(s)	186
BstMWI	GCNNNNNNNGC	3 cut(s)	182, 263, 328
BstNI	CCWGG	2 cut(s)	305, 411
BstNSI	RCATGY	3 cut(s)	95, 322, 361
BstSCI	CCNGG	2 cut(s)	303, 409
BstV1I	GCAGC	4 cut(s)	29, 147, 321, 343
BstZI	CGGCCG	1 cut(s)	183
BsuRI	GGCC	2 cut(s)	64, 185
BtgI	CCRYGG	1 cut(s)	59
BtsI	GCAGTG	1 cut(s)	261
BtsIMutI	CAGTG	2 cut(s)	261, 287
Cac8I	GCNNGC	2 cut(s)	93, 359
CaiI	CAGNNNCTG	1 cut(s)	337
Cfr10I	RCCGGY	1 cut(s)	251
Csp6I	GTAC	2 cut(s)	203, 270
CviAII	CATG	5 cut(s)	60, 92, 319, 358, 379
CviJI	RGCY	5 cut(s)	20, 64, 76, 185, 334
CviKI_1	RGCY	5 cut(s)	20, 64, 76, 185, 334
CviQI	GTAC	2 cut(s)	203, 270
DdeI	CTNAG	1 cut(s)	276
DpnI	GATC	1 cut(s)	231
DpnII	GATC	1 cut(s)	229
EaeI	YGGCCR	2 cut(s)	62, 183
EagI	CGGCCG	1 cut(s)	183
EclXI	CGGCCG	1 cut(s)	183
Eco130I	CCWWGG	1 cut(s)	59
Eco32I	GATATC	1 cut(s)	407
Eco52I	CGGCCG	1 cut(s)	183
EcoRII	CCWGG	2 cut(s)	303, 409
EcoRV	GATATC	1 cut(s)	407
EcoT14I	CCWWGG	1 cut(s)	59
EcoT22I	ATGCAT	1 cut(s)	97
ErhI	CCWWGG	1 cut(s)	59
FaeI	CATG	5 cut(s)	63, 95, 322, 361, 382
FaiI	YATR	8 cut(s)	33, 35, 61, 93, 282, 320, 359, 380
FatI	CATG	5 cut(s)	59, 91, 318, 357, 378
Fnu4HI	GCNGC	4 cut(s)	18, 136, 332, 335
Fsp4HI	GCNGC	4 cut(s)	18, 136, 332, 335
FspBI	CTAG	1 cut(s)	8
GluI	GCNGC	4 cut(s)	18, 136, 332, 335
HaeIII	GGCC	2 cut(s)	64, 185
HapII	CCGG	2 cut(s)	252, 402
Hin1II	CATG	5 cut(s)	63, 95, 322, 361, 382
HinfI	GANTC	2 cut(s)	111, 340
HpaII	CCGG	2 cut(s)	252, 402
HphI	GGTGA	1 cut(s)	326
Hpy166II	GTNNAC	1 cut(s)	261
Hpy188I	TCNGA	2 cut(s)	129, 211
Hpy188III	TCNNGA	3 cut(s)	326, 371, 402
Hpy8I	GTNNAC	1 cut(s)	261
HpyCH4III	ACNGT	1 cut(s)	42
HpyCH4V	TGCA	3 cut(s)	95, 135, 428
HpyF10VI	GCNNNNNNNGC	3 cut(s)	182, 263, 328
HpyF3I	CTNAG	1 cut(s)	276
Hsp92II	CATG	5 cut(s)	63, 95, 322, 361, 382
Kpn2I	TCCGGA	1 cut(s)	401
Kzo9I	GATC	1 cut(s)	229
LmnI	GCTCC	1 cut(s)	366
Lsp1109I	GCAGC	4 cut(s)	29, 147, 321, 343
MaeI	CTAG	1 cut(s)	8
MaeIII	GTNAC	1 cut(s)	314
MalI	GATC	1 cut(s)	231
MboI	GATC	1 cut(s)	229
MboII	GAAGA	1 cut(s)	94
MfeI	CAATTG	1 cut(s)	244
MhlI	GDGCHC	1 cut(s)	289
MluCI	AATT	5 cut(s)	28, 117, 130, 244, 365
MnlI	CCTC	2 cut(s)	31, 429
Mph1103I	ATGCAT	1 cut(s)	97
MroI	TCCGGA	1 cut(s)	401
MseI	TTAA	2 cut(s)	116, 147
MspA1I	CMGCKG	1 cut(s)	334
MspI	CCGG	2 cut(s)	252, 402
MspR9I	CCNGG	2 cut(s)	305, 411
MunI	CAATTG	1 cut(s)	244
MvaI	CCWGG	2 cut(s)	305, 411
MwoI	GCNNNNNNNGC	3 cut(s)	182, 263, 328
NcoI	CCATGG	1 cut(s)	59
NdeII	GATC	1 cut(s)	229
NlaIII	CATG	5 cut(s)	63, 95, 322, 361, 382
NmeAIII	GCCGAG	1 cut(s)	211
NmuCI	GTSAC	1 cut(s)	314
NsiI	ATGCAT	1 cut(s)	97
NspI	RCATGY	3 cut(s)	95, 322, 361
PaeI	GCATGC	2 cut(s)	95, 361
PfeI	GAWTC	2 cut(s)	111, 340
PfoI	TCCNGGA	1 cut(s)	409
PkrI	GCNGC	4 cut(s)	19, 137, 333, 336
Psp6I	CCWGG	2 cut(s)	303, 409
PspGI	CCWGG	2 cut(s)	303, 409
PstNI	CAGNNNCTG	1 cut(s)	337
PvuII	CAGCTG	1 cut(s)	334
RsaI	GTAC	2 cut(s)	204, 271
RsaNI	GTAC	2 cut(s)	203, 270
SaqAI	TTAA	2 cut(s)	116, 147
SatI	GCNGC	4 cut(s)	18, 136, 332, 335
Sau3AI	GATC	1 cut(s)	229
ScrFI	CCNGG	2 cut(s)	305, 411
SduI	GDGCHC	1 cut(s)	289
SetI	ASST	6 cut(s)	204, 309, 316, 336, 421, 427
SmlI	CTYRAG	2 cut(s)	71, 193
SmoI	CTYRAG	2 cut(s)	71, 193
SphI	GCATGC	2 cut(s)	95, 361
Sse9I	AATT	5 cut(s)	28, 117, 130, 244, 365
SspMI	CTAG	1 cut(s)	8
StyD4I	CCNGG	2 cut(s)	303, 409
StyI	CCWWGG	1 cut(s)	59
TaaI	ACNGT	1 cut(s)	42
TaqI	TCGA	1 cut(s)	105
TasI	AATT	5 cut(s)	28, 117, 130, 244, 365
TfiI	GAWTC	2 cut(s)	111, 340
Tru1I	TTAA	2 cut(s)	116, 147
Tru9I	TTAA	2 cut(s)	116, 147
TscAI	CASTG	2 cut(s)	268, 294
TseFI	GTSAC	1 cut(s)	314
TseI	GCWGC	4 cut(s)	17, 135, 331, 334
Tsp45I	GTSAC	1 cut(s)	314
TspRI	CASTG	2 cut(s)	268, 294
XceI	RCATGY	3 cut(s)	95, 322, 361
XspI	CTAG	1 cut(s)	8
Zsp2I	ATGCAT	1 cut(s)	97

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.