Rh5AG366200

Cyclic nucleotide-gated ion channel 1-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Forward (+)
61852611 .. 61877843
25233 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG366200.1

Sequence Viewer

Length: 1557 bp
ATGGTGGTTGTTGCTTTTAGTGGAGTTTTGGATTTGGGATTGAAGGCAAAAATGTCAAAATTAGGGCTAAGAAGGGCGTGTCGCGCCGATATCAACATGCTCTACAAAACTACTTCGCCGTGGCCTTGGTCTGCATCCTCCAGGATTCTACATCATGTCACACGCCTTGGAGATCTACCTCCTCAACTTGCTCATCGGCTTTCTCACTCCTCAGGTCGACCCAAAGATCCACGACCTTTCCGACGCCAAAGAACAAGAGTTGGGATTTCACAGTCGTGTGGTGTAAGAACTTGGACAGTGCAAAGACCACAACTTTACTCAGGTTTTTCGATATGGAGACGGTCAGAGAAAGTGTTACATGTACGCAACTCTCCATCTTTAGAAATCATATCTGCTACAAATTTAGAAGATGGTTCTGAAGAGAGTGATTCTGATAGTTGCTTTCAGCTGAAACAGGTTTTGTCAGAGTATCCTGATGCAGAACAGACTAGTGAGCAATTCCAAATTATATGGTGTCCTCAAGCTCTCAAGTTATGTGGTGAAGAACATCCTCAAGCTGTAAATATATCATCACCACCAGGTTCTGGGTTTAATGGCACCGAGAGCCAAGCTCGACGAAGGAAAACAGGGACAAGCATTTCGACTAGAGTGGTGGATGAGGAAAAAGTTTTTGACACTGAATCAGAGAGTAAGAAGACCCCCTTCATTGGATACTGGAATAAGATAATTCTAACTTCATGTGTGATTTCAGTACTATCGGACCCATTGTTCTTCTACATTCCAATTATCAAAGAAGAAAGCAAGTGCGTTGCAATGGACAAGAAGTTGAGGAACGTAACTCTACTCCTGCGATCACTTACGGACTTCATTTCCGTATTGGATATTCTGTATCAAATTAGAAGTAGAATTGTCGCATCTGGGCTACAGAAGACAAAGTCTTCATCAAGTTTGGATTCCACAACCCCAGAAAATGAGAAGAAAGATGCAATAGATGTGACCCGGAAGTTGAGGCGATTATCTCTGTCCATTATAGTTCACTTGCTCGCTATTGTTCCCCTTCCACAGGTCTCAATATTGGTGGTCTTCTTGAGAATGAGTGATTCTGGGTATTTTCAGAAAAGAATGATTCTGAACATTTTTCTTCTATTCCAATATGTGCCAAACATTTACCGGCTCCACTTATCTTATAAAAAATTAGACACGACTGCAAGATGGGTTAAGGGTGCATTCAATTTCTTTCTATACATTATTGCTAGCCATGTACTTGGGGCATTTTGGTACTTTTTCTCTATTCAGCGAGAGACATTGTGCTGGAATCAAGCATGTACAAACATCAAAGGATGTGTGGCTGCTCGTTGCGATGATAATGTTTCAGTGAATGTGACATTGTTAAATGGATTATGCCCGATAAATCCGCCAAACGCTACCCTATTTGACTTTGGAATGTTTCTCGATACTCTTCAATCTGGTTACACTGGACAAATAAGTTTCCCAACAAAATTCTTCTACTCTTTTTGGTGGGCGCTCAAAAATCTAAGGTTTGTGTGCATATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

518

Amino Acids

58.95

Weight (kDa)

9.49

Isoelectric Point (pI)

54.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1188
AccB1I GGYRCC 1 cut(s) 596
AccB7I CCANNNNNTGG 1 cut(s) 584
AccI GTMKAC 1 cut(s) 217
AccII CGCG 1 cut(s) 84
AciI CCGC 1 cut(s) 1415
AclWI GGATC 1 cut(s) 221
AcsI RAATTY 2 cut(s) 400, 1499
AcuI CTGAAG 1 cut(s) 438
AcyI GRCGYC 1 cut(s) 244
AfaI GTAC 5 cut(s) 363, 753, 1263, 1280, 1327
AfiI CCNNNNNNNGG 3 cut(s) 584, 707, 1063
AflIII ACRYGT 1 cut(s) 358
AgsI TTSAA 3 cut(s) 43, 1231, 1463
AhlI ACTAGT 1 cut(s) 488
AjnI CCWGG 2 cut(s) 140, 577
AleI CACNNNNGTG 1 cut(s) 274
AloI GAACNNNNNNTCC 2 cut(s) 752, 784
AluBI AGCT 4 cut(s) 448, 524, 557, 611
AluI AGCT 4 cut(s) 448, 524, 557, 611
Alw26I GTCTC 3 cut(s) 331, 1072, 1295
AlwI GGATC 1 cut(s) 221
AlwNI CAGNNNCTG 1 cut(s) 584
AoxI GGCC 1 cut(s) 122
ApeKI GCWGC 1 cut(s) 1349
ApoI RAATTY 2 cut(s) 400, 1499
ArsI GACNNNNNNTTYG 2 cut(s) 622, 654
AspLEI GCGC 2 cut(s) 86, 1525
AspS9I GGNCC 1 cut(s) 760
AsuC2I CCSGG 1 cut(s) 1000
AsuHPI GGTGA 2 cut(s) 551, 564
AsuNHI GCTAGC 1 cut(s) 1253
AvaII GGWCC 1 cut(s) 760
AxyI CCTNAGG 1 cut(s) 211
BanI GGYRCC 1 cut(s) 596
BbsI GAAGAC 4 cut(s) 701, 930, 935, 1075
BbvI GCAGC 1 cut(s) 1336
BccI CCATC 3 cut(s) 382, 404, 1206
BceAI ACGGC 1 cut(s) 103
BciT130I CCWGG 2 cut(s) 142, 579
BciVI GTATCC 2 cut(s) 480, 704
BcnI CCSGG 1 cut(s) 1000
BcoDI GTCTC 3 cut(s) 331, 1072, 1295
BcuI ACTAGT 1 cut(s) 488
BfaI CTAG 3 cut(s) 489, 645, 1254
BfmI CTRYAG 1 cut(s) 923
BfoI RGCGCY 1 cut(s) 1526
BfuI GTATCC 2 cut(s) 480, 704
BglII AGATCT 1 cut(s) 172
BisI GCNGC 1 cut(s) 1350
BlsI GCNGC 1 cut(s) 1351
BmcAI AGTACT 1 cut(s) 753
Bme1390I CCNGG 3 cut(s) 142, 579, 1000
Bme18I GGWCC 1 cut(s) 760
BmgT120I GGNCC 1 cut(s) 760
BmiI GGNNCC 3 cut(s) 598, 762, 1175
BmrFI CCNGG 3 cut(s) 142, 579, 1000
BmsI GCATC 4 cut(s) 143, 466, 923, 973
BmtI GCTAGC 1 cut(s) 1257
BpiI GAAGAC 4 cut(s) 701, 930, 935, 1075
BplI GAGNNNNNCTC 2 cut(s) 595, 627
BpmI CTGGAG 1 cut(s) 124
BpuEI CTTGAG 4 cut(s) 504, 512, 537, 1108
BpuMI CCSGG 1 cut(s) 1000
BsaHI GRCGYC 1 cut(s) 244
BsaI GGTCTC 1 cut(s) 1072
BsaJI CCNNGG 3 cut(s) 119, 125, 166
Bsc4I CCNNNNNNNGG 3 cut(s) 584, 707, 1063
Bse118I RCCGGY 1 cut(s) 1170
Bse1I ACTGG 2 cut(s) 719, 1480
Bse21I CCTNAGG 1 cut(s) 211
Bse3DI GCAATG 1 cut(s) 819
BseBI CCWGG 2 cut(s) 142, 579
BseDI CCNNGG 3 cut(s) 119, 125, 166
BseGI GGATG 4 cut(s) 134, 547, 661, 1346
BseLI CCNNNNNNNGG 3 cut(s) 584, 707, 1063
BseMI GCAATG 1 cut(s) 819
BseMII CTCAG 2 cut(s) 225, 333
BseNI ACTGG 2 cut(s) 719, 1480
BseRI GAGGAG 2 cut(s) 171, 199
BseXI GCAGC 1 cut(s) 1336
Bsh1236I CGCG 1 cut(s) 84
BshFI GGCC 1 cut(s) 124
BshNI GGYRCC 1 cut(s) 596
BsiSI CCGG 2 cut(s) 1000, 1171
BslFI GGGAC 1 cut(s) 643
BslI CCNNNNNNNGG 3 cut(s) 584, 707, 1063
BsmAI GTCTC 3 cut(s) 331, 1072, 1295
BsmBI CGTCTC 1 cut(s) 331
BsmFI GGGAC 1 cut(s) 643
BsmI GAATGC 1 cut(s) 1226
BsnI GGCC 1 cut(s) 124
Bso31I GGTCTC 1 cut(s) 1072
Bsp1407I TGTACA 1 cut(s) 1325
Bsp143I GATC 3 cut(s) 172, 226, 851
BspACI CCGC 1 cut(s) 1415
BspANI GGCC 1 cut(s) 124
BspCNI CTCAG 2 cut(s) 224, 332
BspFNI CGCG 1 cut(s) 84
BspLI GGNNCC 3 cut(s) 598, 762, 1175
BspOI GCTAGC 1 cut(s) 1257
BspPI GGATC 1 cut(s) 221
BspT107I GGYRCC 1 cut(s) 596
BspTNI GGTCTC 1 cut(s) 1072
BsrDI GCAATG 1 cut(s) 819
BsrFI RCCGGY 1 cut(s) 1170
BsrGI TGTACA 1 cut(s) 1325
BsrI ACTGG 2 cut(s) 719, 1480
BssAI RCCGGY 1 cut(s) 1170
BssECI CCNNGG 3 cut(s) 119, 125, 166
BssMI GATC 3 cut(s) 172, 226, 851
BssNI GRCGYC 1 cut(s) 244
BssT1I CCWWGG 2 cut(s) 125, 166
Bst2UI CCWGG 2 cut(s) 142, 579
Bst4CI ACNGT 3 cut(s) 273, 298, 342
Bst6I CTCTTC 2 cut(s) 414, 1464
BstACI GRCGYC 1 cut(s) 244
BstAUI TGTACA 1 cut(s) 1325
BstC8I GCNNGC 2 cut(s) 1044, 1255
BstDEI CTNAG 4 cut(s) 68, 211, 319, 1535
BstDSI CCRYGG 1 cut(s) 119
BstENI CCTNNNNNAGG 1 cut(s) 1061
BstF5I GGATG 4 cut(s) 134, 547, 661, 1346
BstFNI CGCG 1 cut(s) 84
BstH2I RGCGCY 1 cut(s) 1526
BstHHI GCGC 2 cut(s) 86, 1525
BstKTI GATC 3 cut(s) 175, 229, 854
BstMAI GTCTC 3 cut(s) 331, 1072, 1295
BstMBI GATC 3 cut(s) 172, 226, 851
BstMWI GCNNNNNNNGC 2 cut(s) 83, 603
BstNI CCWGG 2 cut(s) 142, 579
BstNSI RCATGY 3 cut(s) 100, 362, 1326
BstSCI CCNGG 3 cut(s) 140, 577, 998
BstSFI CTRYAG 1 cut(s) 923
BstUI CGCG 1 cut(s) 84
BstV1I GCAGC 1 cut(s) 1336
BstV2I GAAGAC 4 cut(s) 701, 930, 935, 1075
BstX2I RGATCY 2 cut(s) 172, 226
BstXI CCANNNNNNTGG 1 cut(s) 1265
BstYI RGATCY 2 cut(s) 172, 226
Bsu36I CCTNAGG 1 cut(s) 211
BsuI GTATCC 2 cut(s) 480, 704
BsuRI GGCC 1 cut(s) 124
BtgI CCRYGG 1 cut(s) 119
BtgZI GCGATG 1 cut(s) 1374
BtsCI GGATG 4 cut(s) 134, 547, 661, 1346
BtsIMutI CAGTG 4 cut(s) 303, 675, 1380, 1473
Cac8I GCNNGC 2 cut(s) 1044, 1255
CaiI CAGNNNCTG 1 cut(s) 584
CfoI GCGC 2 cut(s) 86, 1525
Cfr10I RCCGGY 1 cut(s) 1170
Cfr13I GGNCC 1 cut(s) 760
CseI GACGC 1 cut(s) 252
CsiI ACCWGGT 1 cut(s) 577
Csp6I GTAC 5 cut(s) 362, 752, 1262, 1279, 1326
CspCI CAANNNNNGTGG 4 cut(s) 517, 552, 1059, 1094
CviAII CATG 6 cut(s) 97, 155, 359, 738, 1259, 1323
CviQI GTAC 5 cut(s) 362, 752, 1262, 1279, 1326
DdeI CTNAG 4 cut(s) 68, 211, 319, 1535
DpnI GATC 3 cut(s) 174, 228, 853
DpnII GATC 3 cut(s) 172, 226, 851
Eam1104I CTCTTC 2 cut(s) 414, 1464
EarI CTCTTC 2 cut(s) 414, 1464
EciI GGCGGA 1 cut(s) 1404
Eco130I CCWWGG 2 cut(s) 125, 166
Eco31I GGTCTC 1 cut(s) 1072
Eco32I GATATC 1 cut(s) 91
Eco47I GGWCC 1 cut(s) 760
Eco57I CTGAAG 1 cut(s) 438
Eco81I CCTNAGG 1 cut(s) 211
EcoNI CCTNNNNNAGG 1 cut(s) 1061
EcoRII CCWGG 2 cut(s) 140, 577
EcoRV GATATC 1 cut(s) 91
EcoT14I CCWWGG 2 cut(s) 125, 166
ErhI CCWWGG 2 cut(s) 125, 166
Esp3I CGTCTC 1 cut(s) 331
FaeI CATG 6 cut(s) 100, 158, 362, 741, 1262, 1326
FalI AAGNNNNNCTT 2 cut(s) 686, 718
FaqI GGGAC 1 cut(s) 643
FatI CATG 6 cut(s) 96, 154, 358, 737, 1258, 1322
FblI GTMKAC 1 cut(s) 217
Fnu4HI GCNGC 1 cut(s) 1350
FokI GGATG 4 cut(s) 121, 534, 668, 1353
Fsp4HI GCNGC 1 cut(s) 1350
FspBI CTAG 3 cut(s) 489, 645, 1254
GlaI GCGC 2 cut(s) 85, 1524
GluI GCNGC 1 cut(s) 1350
GsuI CTGGAG 1 cut(s) 124
HaeII RGCGCY 1 cut(s) 1526
HaeIII GGCC 1 cut(s) 124
HapII CCGG 2 cut(s) 1000, 1171
HgaI GACGC 1 cut(s) 252
HhaI GCGC 2 cut(s) 86, 1525
Hin1I GRCGYC 1 cut(s) 244
Hin1II CATG 6 cut(s) 100, 158, 362, 741, 1262, 1326
Hin6I GCGC 2 cut(s) 84, 1523
HinP1I GCGC 2 cut(s) 84, 1523
HincII GTYRAC 1 cut(s) 218
HindII GTYRAC 1 cut(s) 218
HinfI GANTC 7 cut(s) 145, 428, 680, 953, 1100, 1126, 1315
HpaII CCGG 2 cut(s) 1000, 1171
HphI GGTGA 2 cut(s) 551, 564
Hpy166II GTNNAC 2 cut(s) 218, 1036
Hpy188I TCNGA 9 cut(s) 242, 346, 418, 433, 466, 685, 760, 1116, 1131
Hpy188III TCNNGA 3 cut(s) 473, 1087, 1451
Hpy8I GTNNAC 2 cut(s) 218, 1036
Hpy99I CGWCG 2 cut(s) 246, 618
HpyAV CCTTC 5 cut(s) 37, 66, 612, 712, 1067
HpyCH4III ACNGT 3 cut(s) 273, 298, 342
HpyCH4IV ACGT 1 cut(s) 834
HpyCH4V TGCA 8 cut(s) 134, 301, 479, 812, 986, 1208, 1226, 1548
HpyF10VI GCNNNNNNNGC 2 cut(s) 83, 603
HpyF3I CTNAG 4 cut(s) 68, 211, 319, 1535
HpySE526I ACGT 1 cut(s) 834
Hsp92I GRCGYC 1 cut(s) 244
Hsp92II CATG 6 cut(s) 100, 158, 362, 741, 1262, 1326
HspAI GCGC 2 cut(s) 84, 1523
Kzo9I GATC 3 cut(s) 172, 226, 851
LmnI GCTCC 1 cut(s) 1179
Lsp1109I GCAGC 1 cut(s) 1336
LweI GCATC 4 cut(s) 143, 466, 923, 973
MabI ACCWGGT 1 cut(s) 577
MaeI CTAG 3 cut(s) 489, 645, 1254
MaeII ACGT 1 cut(s) 834
MaeIII GTNAC 6 cut(s) 157, 354, 835, 994, 1381, 1469
MalI GATC 3 cut(s) 174, 228, 853
MboI GATC 3 cut(s) 172, 226, 851
MflI RGATCY 2 cut(s) 172, 226
MmeI TCCRAC 1 cut(s) 265
MnlI CCTC 9 cut(s) 148, 189, 192, 220, 528, 561, 652, 822, 1002
MseI TTAA 3 cut(s) 591, 1218, 1391
MslI CAYNNNNRTG 1 cut(s) 274
MspA1I CMGCKG 1 cut(s) 448
MspI CCGG 2 cut(s) 1000, 1171
MspR9I CCNGG 3 cut(s) 142, 579, 1000
Mva1269I GAATGC 1 cut(s) 1226
MvaI CCWGG 2 cut(s) 142, 579
MvnI CGCG 1 cut(s) 84
MwoI GCNNNNNNNGC 2 cut(s) 83, 603
NciI CCSGG 1 cut(s) 1000
NdeII GATC 3 cut(s) 172, 226, 851
NheI GCTAGC 1 cut(s) 1253
NlaIII CATG 6 cut(s) 100, 158, 362, 741, 1262, 1326
NlaIV GGNNCC 3 cut(s) 598, 762, 1175
NmuCI GTSAC 3 cut(s) 157, 994, 1381
NspI RCATGY 3 cut(s) 100, 362, 1326
OliI CACNNNNGTG 1 cut(s) 274
PciI ACATGT 1 cut(s) 358
PcsI WCGNNNNNNNCGW 1 cut(s) 238
PctI GAATGC 1 cut(s) 1226
PfeI GAWTC 7 cut(s) 145, 428, 680, 953, 1100, 1126, 1315
PflFI GACNNNGTC 1 cut(s) 934
PflMI CCANNNNNTGG 1 cut(s) 584
PfoI TCCNGGA 1 cut(s) 140
PkrI GCNGC 1 cut(s) 1351
PscI ACATGT 1 cut(s) 358
PsiI TTATAA 1 cut(s) 1188
Psp6I CCWGG 2 cut(s) 140, 577
PspGI CCWGG 2 cut(s) 140, 577
PspN4I GGNNCC 3 cut(s) 598, 762, 1175
PspPI GGNCC 1 cut(s) 760
PstNI CAGNNNCTG 1 cut(s) 584
PsuI RGATCY 2 cut(s) 172, 226
PsyI GACNNNGTC 1 cut(s) 934
PvuII CAGCTG 1 cut(s) 448
RsaI GTAC 5 cut(s) 363, 753, 1263, 1280, 1327
RsaNI GTAC 5 cut(s) 362, 752, 1262, 1279, 1326
RseI CAYNNNNRTG 1 cut(s) 274
SalI GTCGAC 1 cut(s) 216
SaqAI TTAA 3 cut(s) 591, 1218, 1391
SatI GCNGC 1 cut(s) 1350
Sau3AI GATC 3 cut(s) 172, 226, 851
Sau96I GGNCC 1 cut(s) 760
ScaI AGTACT 1 cut(s) 753
ScrFI CCNGG 3 cut(s) 142, 579, 1000
SexAI ACCWGGT 1 cut(s) 577
SfaNI GCATC 4 cut(s) 143, 466, 923, 973
SfcI CTRYAG 1 cut(s) 923
SinI GGWCC 1 cut(s) 760
SmiMI CAYNNNNRTG 1 cut(s) 274
SmlI CTYRAG 4 cut(s) 519, 527, 552, 1087
SmoI CTYRAG 4 cut(s) 519, 527, 552, 1087
SpeI ACTAGT 1 cut(s) 488
SsiI CCGC 1 cut(s) 1415
SspI AATATT 1 cut(s) 1074
SspMI CTAG 3 cut(s) 489, 645, 1254
StyD4I CCNGG 3 cut(s) 140, 577, 998
StyI CCWWGG 2 cut(s) 125, 166
TaaI ACNGT 3 cut(s) 273, 298, 342
TaiI ACGT 1 cut(s) 837
TaqI TCGA 5 cut(s) 217, 329, 613, 641, 1452
TatI WGTACW 3 cut(s) 751, 1261, 1325
TfiI GAWTC 7 cut(s) 145, 428, 680, 953, 1100, 1126, 1315
Tru1I TTAA 3 cut(s) 591, 1218, 1391
Tru9I TTAA 3 cut(s) 591, 1218, 1391
TscAI CASTG 4 cut(s) 303, 682, 1380, 1480
TseFI GTSAC 3 cut(s) 157, 994, 1381
TseI GCWGC 1 cut(s) 1349
Tsp45I GTSAC 3 cut(s) 157, 994, 1381
TspDTI ATGAA 4 cut(s) 694, 726, 856, 930
TspGWI ACGGA 2 cut(s) 862, 875
TspRI CASTG 4 cut(s) 303, 682, 1380, 1480
Tth111I GACNNNGTC 1 cut(s) 934
Van91I CCANNNNNTGG 1 cut(s) 584
VpaK11BI GGWCC 1 cut(s) 760
XagI CCTNNNNNAGG 1 cut(s) 1061
XapI RAATTY 2 cut(s) 400, 1499
XceI RCATGY 3 cut(s) 100, 362, 1326
XmiI GTMKAC 1 cut(s) 217
XspI CTAG 3 cut(s) 489, 645, 1254
ZrmI AGTACT 1 cut(s) 753
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.