Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002260.1

Orthogroup ID

OG0002268

Physical Location & Seq

Genomic Coordinates Reverse (-)

261757 .. 262603

Gene Structure 847 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002260.1_g000060.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

atgtttgtggtatcgtgtattgcggtctcattcgaccctttgttcttatacatcccaattgttgatgaggataacaagtgcctgggaatagataagaagttgatgactgcagctcttgtgctgcgctcacttacagatacaccttccgtgctccatattatacaccaaattcatagggttgccgtcatgccagaggtagaaccttcgtggtggatggaccctgtagaattgcagaaattgcaagaggaaagaaggtccaaagtccggaggatttgtgtccacattgctatttattttcttgccgtacttcccattccacaggagacttcgccggagccggtcaccgatcgccggattccggtcaacggtcgcctcccactggaatttgctgaaaatctcaccggaaagtcttttgccccgaatagacatctattgccctataatagatgggcaatagaggtctattgccccctaatagacgtctattgcccctcaatagacgactatcagccatgtattgcccccccaatagacgactatcagccatgtattgctccccaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans

Protein Analysis

187

Amino Acids

21.43

Weight (kDa)

5.32

Isoelectric Point (pI)

69.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002268)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g19150 FvH4_4g19150 FvH4_4g19150 FvH4_4g19150 FvH4_4g19150 FvH4_4g19150 FvH4_4g19150
prunus_persica	Prupe.4G109500_v2.0.a1 Prupe.4G109500_v2.0.a1 Prupe.4G109500_v2.0.a1 Prupe.4G109600_v2.0.a1 Prupe.4G109900_v2.0.a1 Prupe.4G263700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0424091 RchiOBHm_Chr5g0019831 RchiOBHm_Chr5g0020211 RchiOBHm_Chr5g0020221
rosa_laevigata	RLG00000007504
rosa_multiflora	Rmu_co8478429.1_g000001 Rmu_sc0002260.1_g000052 Rmu_sc0002260.1_g000058 Rmu_sc0002260.1_g000060
rosa_roxburghii	Rroxscaffold_5G00366100
rosa_rugosa	Rorug04G0192900 Rorug04G0193000 Rorug04G0193100 Rorug04G0193100 Rorug04G0193100 Rorug07G0254600
rosa_samantha	Rh4AG251200 Rh4BG256200 Rh4BG256300 Rh4CG266700 Rh4DG250800 Rh4DG250900 Rh5AG148300 Rh5AG366200 Rh5AG366300 Rh5CG159200
rosa_wichuraiana	Rw4G021640 Rw5G013110 Rw5G013120 Rw5G034340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	483
AccIII	TCCGGA	1 cut(s)	264
AciI	CCGC	1 cut(s)	23
AcsI	RAATTY	2 cut(s)	168, 383
AcyI	GRCGYC	1 cut(s)	480
AfaI	GTAC	1 cut(s)	306
AfiI	CCNNNNNNNGG	5 cut(s)	264, 351, 358, 365, 379
AjnI	CCWGG	1 cut(s)	81
AluBI	AGCT	1 cut(s)	113
AluI	AGCT	1 cut(s)	113
Alw21I	GWGCWC	1 cut(s)	153
Alw26I	GTCTC	2 cut(s)	31, 317
Aor13HI	TCCGGA	1 cut(s)	264
ApeKI	GCWGC	2 cut(s)	110, 121
ApoI	RAATTY	2 cut(s)	168, 383
AspLEI	GCGC	1 cut(s)	126
AspS9I	GGNCC	2 cut(s)	217, 255
AsuHPI	GGTGA	2 cut(s)	334, 391
AvaII	GGWCC	2 cut(s)	217, 255
Bbv12I	GWGCWC	1 cut(s)	153
BbvI	GCAGC	2 cut(s)	108, 122
BccI	CCATC	2 cut(s)	208, 441
BceAI	ACGGC	2 cut(s)	167, 287
BciT130I	CCWGG	1 cut(s)	83
BcoDI	GTCTC	2 cut(s)	31, 317
BfmI	CTRYAG	2 cut(s)	108, 222
BisI	GCNGC	2 cut(s)	111, 122
BlsI	GCNGC	2 cut(s)	112, 123
Bme1390I	CCNGG	1 cut(s)	83
Bme18I	GGWCC	2 cut(s)	217, 255
BmgT120I	GGNCC	2 cut(s)	217, 255
BmiI	GGNNCC	2 cut(s)	219, 336
BmrFI	CCNGG	1 cut(s)	83
BsaHI	GRCGYC	1 cut(s)	480
BsaI	GGTCTC	1 cut(s)	31
BsaJI	CCNNGG	1 cut(s)	82
BsaWI	WCCGGW	3 cut(s)	264, 358, 401
BsaXI	ACNNNNNCTCC	2 cut(s)	259, 289
Bsc4I	CCNNNNNNNGG	5 cut(s)	264, 351, 358, 365, 379
Bse118I	RCCGGY	1 cut(s)	337
Bse1I	ACTGG	1 cut(s)	384
Bse3DI	GCAATG	1 cut(s)	282
BseAI	TCCGGA	1 cut(s)	264
BseBI	CCWGG	1 cut(s)	83
BseDI	CCNNGG	1 cut(s)	82
BseGI	GGATG	2 cut(s)	51, 219
BseLI	CCNNNNNNNGG	5 cut(s)	264, 351, 358, 365, 379
BseMI	GCAATG	1 cut(s)	282
BseNI	ACTGG	1 cut(s)	384
BseXI	GCAGC	2 cut(s)	108, 122
Bsh1285I	CGRYCG	2 cut(s)	349, 370
BsiEI	CGRYCG	2 cut(s)	349, 370
BsiHKAI	GWGCWC	1 cut(s)	153
BsiSI	CCGG	6 cut(s)	265, 332, 338, 352, 359, 402
BslI	CCNNNNNNNGG	5 cut(s)	264, 351, 358, 365, 379
BsmAI	GTCTC	2 cut(s)	31, 317
Bso31I	GGTCTC	1 cut(s)	31
Bsp1286I	GDGCHC	1 cut(s)	153
Bsp13I	TCCGGA	1 cut(s)	264
Bsp143I	GATC	1 cut(s)	346
BspACI	CCGC	1 cut(s)	23
BspEI	TCCGGA	1 cut(s)	264
BspLI	GGNNCC	2 cut(s)	219, 336
BspMAI	CTGCAG	1 cut(s)	112
BspTNI	GGTCTC	1 cut(s)	31
BsrDI	GCAATG	1 cut(s)	282
BsrFI	RCCGGY	1 cut(s)	337
BsrI	ACTGG	1 cut(s)	384
BssAI	RCCGGY	1 cut(s)	337
BssECI	CCNNGG	1 cut(s)	82
BssMI	GATC	1 cut(s)	346
BssNI	GRCGYC	1 cut(s)	480
Bst2UI	CCWGG	1 cut(s)	83
Bst4CI	ACNGT	1 cut(s)	368
BstACI	GRCGYC	1 cut(s)	480
BstAPI	GCANNNNNTGC	1 cut(s)	238
BstEII	GGTNACC	1 cut(s)	340
BstF5I	GGATG	2 cut(s)	51, 219
BstHHI	GCGC	1 cut(s)	126
BstKTI	GATC	1 cut(s)	349
BstMAI	GTCTC	2 cut(s)	31, 317
BstMBI	GATC	1 cut(s)	346
BstMCI	CGRYCG	2 cut(s)	349, 370
BstMWI	GCNNNNNNNGC	1 cut(s)	238
BstNI	CCWGG	1 cut(s)	83
BstPI	GGTNACC	1 cut(s)	340
BstSCI	CCNGG	1 cut(s)	81
BstSFI	CTRYAG	2 cut(s)	108, 222
BstV1I	GCAGC	2 cut(s)	108, 122
BtsCI	GGATG	2 cut(s)	51, 219
BtsIMutI	CAGTG	1 cut(s)	377
CfoI	GCGC	1 cut(s)	126
Cfr10I	RCCGGY	1 cut(s)	337
Cfr13I	GGNCC	2 cut(s)	217, 255
Csp6I	GTAC	1 cut(s)	305
CviAII	CATG	3 cut(s)	187, 513, 546
CviJI	RGCY	4 cut(s)	113, 337, 511, 544
CviKI_1	RGCY	4 cut(s)	113, 337, 511, 544
CviQI	GTAC	1 cut(s)	305
DpnI	GATC	1 cut(s)	348
DpnII	GATC	1 cut(s)	346
Eco31I	GGTCTC	1 cut(s)	31
Eco47I	GGWCC	2 cut(s)	217, 255
Eco91I	GGTNACC	1 cut(s)	340
EcoO65I	GGTNACC	1 cut(s)	340
EcoRII	CCWGG	1 cut(s)	81
FaeI	CATG	3 cut(s)	190, 516, 549
FaiI	YATR	8 cut(s)	49, 156, 161, 174, 188, 441, 514, 547
FatI	CATG	3 cut(s)	186, 512, 545
Fnu4HI	GCNGC	2 cut(s)	111, 122
FokI	GGATG	2 cut(s)	38, 226
Fsp4HI	GCNGC	2 cut(s)	111, 122
GlaI	GCGC	1 cut(s)	125
GluI	GCNGC	2 cut(s)	111, 122
HapII	CCGG	6 cut(s)	265, 332, 338, 352, 359, 402
HhaI	GCGC	1 cut(s)	126
Hin1I	GRCGYC	1 cut(s)	480
Hin1II	CATG	3 cut(s)	190, 516, 549
Hin6I	GCGC	1 cut(s)	124
HinP1I	GCGC	1 cut(s)	124
HincII	GTYRAC	1 cut(s)	364
HindII	GTYRAC	1 cut(s)	364
HinfI	GANTC	1 cut(s)	355
HpaII	CCGG	6 cut(s)	265, 332, 338, 352, 359, 402
HphI	GGTGA	2 cut(s)	334, 391
Hpy166II	GTNNAC	2 cut(s)	280, 364
Hpy188III	TCNNGA	1 cut(s)	265
Hpy8I	GTNNAC	2 cut(s)	280, 364
HpyAV	CCTTC	3 cut(s)	153, 213, 246
HpyCH4III	ACNGT	1 cut(s)	368
HpyCH4IV	ACGT	1 cut(s)	480
HpyCH4V	TGCA	3 cut(s)	110, 232, 241
HpyF10VI	GCNNNNNNNGC	1 cut(s)	238
HpySE526I	ACGT	1 cut(s)	480
Hsp92I	GRCGYC	1 cut(s)	480
Hsp92II	CATG	3 cut(s)	190, 516, 549
HspAI	GCGC	1 cut(s)	124
Kpn2I	TCCGGA	1 cut(s)	264
Kzo9I	GATC	1 cut(s)	346
LmnI	GCTCC	3 cut(s)	156, 334, 559
Lsp1109I	GCAGC	2 cut(s)	108, 122
MaeII	ACGT	1 cut(s)	480
MaeIII	GTNAC	1 cut(s)	340
MalI	GATC	1 cut(s)	348
MboI	GATC	1 cut(s)	346
MfeI	CAATTG	1 cut(s)	57
MhlI	GDGCHC	1 cut(s)	153
MluCI	AATT	5 cut(s)	57, 168, 227, 236, 383
MnlI	CCTC	7 cut(s)	61, 187, 238, 261, 383, 451, 502
MroI	TCCGGA	1 cut(s)	264
MspI	CCGG	6 cut(s)	265, 332, 338, 352, 359, 402
MspR9I	CCNGG	1 cut(s)	83
MunI	CAATTG	1 cut(s)	57
MvaI	CCWGG	1 cut(s)	83
MwoI	GCNNNNNNNGC	1 cut(s)	238
NdeII	GATC	1 cut(s)	346
NlaIII	CATG	3 cut(s)	190, 516, 549
NlaIV	GGNNCC	2 cut(s)	219, 336
NmuCI	GTSAC	1 cut(s)	340
PfeI	GAWTC	1 cut(s)	355
PkrI	GCNGC	2 cut(s)	112, 123
Ple19I	CGATCG	1 cut(s)	349
Psp6I	CCWGG	1 cut(s)	81
PspEI	GGTNACC	1 cut(s)	340
PspGI	CCWGG	1 cut(s)	81
PspN4I	GGNNCC	2 cut(s)	219, 336
PspPI	GGNCC	2 cut(s)	217, 255
PstI	CTGCAG	1 cut(s)	112
PvuI	CGATCG	1 cut(s)	349
RsaI	GTAC	1 cut(s)	306
RsaNI	GTAC	1 cut(s)	305
SatI	GCNGC	2 cut(s)	111, 122
Sau3AI	GATC	1 cut(s)	346
Sau96I	GGNCC	2 cut(s)	217, 255
ScrFI	CCNGG	1 cut(s)	83
SduI	GDGCHC	1 cut(s)	153
SetI	ASST	7 cut(s)	115, 145, 198, 205, 257, 462, 483
SfcI	CTRYAG	2 cut(s)	108, 222
SinI	GGWCC	2 cut(s)	217, 255
Sse9I	AATT	5 cut(s)	57, 168, 227, 236, 383
SsiI	CCGC	1 cut(s)	23
StyD4I	CCNGG	1 cut(s)	81
TaaI	ACNGT	1 cut(s)	368
TaiI	ACGT	1 cut(s)	483
TaqI	TCGA	1 cut(s)	33
TasI	AATT	5 cut(s)	57, 168, 227, 236, 383
TfiI	GAWTC	1 cut(s)	355
TscAI	CASTG	1 cut(s)	384
TseFI	GTSAC	1 cut(s)	340
TseI	GCWGC	2 cut(s)	110, 121
Tsp45I	GTSAC	1 cut(s)	340
TspDTI	ATGAA	1 cut(s)	161
TspGWI	ACGGA	1 cut(s)	136
TspRI	CASTG	1 cut(s)	384
VpaK11BI	GGWCC	2 cut(s)	217, 255
XapI	RAATTY	2 cut(s)	168, 383
ZraI	GACGTC	1 cut(s)	481

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.