Rroxscaffold_5G00366100

Cyclic nucleotide-gated ion channel 1-like

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Forward (+)
47885768 .. 47909554
23787 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00366100.1

Sequence Viewer

Length: 1488 bp
ATGGAAACTCAAAAATCACTCTTGATTGAGGAGGAGATGATCAAGACAAAATATCAAGATATTGATACGTGGATGTCGGACAATGGTCTCCCTGAGGATATGAAGATGGAAATCACGGAACGCGTAAAAGAATATAACGTAGTGGAAAAACACCTCGGTGTTGATGTGGATATAGAATTTCTGCTCTCTGTTACTCCCACGGGGTTAAGAAATTCTTTCAAGGAGCATCTCTGCATAAATGCCCTAAAGAAACTACCCATGCTGCACAATATGTCTGAAGTTGCTTTGAGGATGATGTGCGCCTATGCCAAGCCACAAATTTATCACAAGAATAGCTACGTTTTCAGGAAAGGAAAGGTTATTGATACAATGATCATCATCATAAAAGGCACAATTATATGTAGCAATGCTGAAGAATTAAGAACCTCCTCAACAATGATTACCGAGCCACGTATTCGTCAGAAAGATGATTGTTATGGAGAAAAACTTCTGGATTGGGAACCAACAGATGAATGCCCTACTCTAACCTCCACGCAAGATGTCCAATGCCAAACAAAAGTAGAAGCCCTTGTTGTCACGCTTGATTCAGAAATGAAAAAGGTCGTAGACTACTGGAGAACGAGACAGTGGGATCAGAATTTCACTCCTCGATTGAAGTTGACGGCTTCCGAAGACGAAATTGAGAGGATACTAAACCAGATGTATTACCAGTCGGGAACTACAGAGAAGATTGAGGATGAGGAGTTAAGACAGAAGAGGAATATCATGTTCAAAGAGAAAGCTATACTTGAGTGGGTGTCAAGAAATGGTCTCCCTGAGAACCTGAAGACAGAAATCATGACGAACATGAAAGTAGGTAACGAAGTGGGAATCAACATAGAAGCTGATGTGGATGTGAAGTGGATACTCTCTACTGATCTTCCGGAACATATCGGTGTATCGATAAGGAAGCACCTTTGCATGAATACACTAAAGAGAGTACCCATACTTGAAAATATGGATGAAGACGTGCTAATCTCGATCTGCAAACATCTTGAGCCAGTGGTCTACACCGAGAATAACTACCTTTGTCGAACAGGTGACCGACTTGAGTTTATGCTTATTATTATAGAAGGCATATTCGTATGGACCAACAGGCATGGTGATGCTGCAACAAGTTCGTCACCACTGACCACCAGGGGTATTGTGAAAGGTGATTTCTGTGGAGAAGACATATTAAGTTGGGTAGTCTCTGAAAATAAAATCAAGTGGGATCAGAGTTTCAACAATTGTGCCGGTGCGTCCACTTCTGGTACTACTGAGCATAGAGCACTGGAACAGATTATCCAGGTTCAAGGTGACATGCTTCGTGAGCAGCTGCTGGTTCTTGTTCGAGAGAGCATGCTCCAATTTCGTGAAGATATGGCTACTCAGGCACGGAGACTAGATGACATGACAGAGTTTTTAGCAAAATCGGGATATCCAGGAACACCTCCTCCTGCACGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

495

Amino Acids

57.11

Weight (kDa)

5.16

Isoelectric Point (pI)

42.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 606, 1047
AccII CGCG 1 cut(s) 123
AccIII TCCGGA 1 cut(s) 922
AclWI GGATC 2 cut(s) 639, 1260
AcsI RAATTY 4 cut(s) 176, 211, 318, 637
AcuI CTGAAG 3 cut(s) 297, 432, 845
AfaI GTAC 2 cut(s) 981, 1294
AflIII ACRYGT 1 cut(s) 121
AgsI TTSAA 6 cut(s) 220, 655, 772, 992, 1264, 1334
AjiI CACGTC 1 cut(s) 1009
AjnI CCWGG 3 cut(s) 1175, 1326, 1462
AleI CACNNNNGTG 1 cut(s) 156
AloI GAACNNNNNNTCC 3 cut(s) 1308, 1340, 1459
AluBI AGCT 4 cut(s) 336, 782, 884, 1357
AluI AGCT 4 cut(s) 336, 782, 884, 1357
Alw21I GWGCWC 1 cut(s) 1312
Alw26I GTCTC 5 cut(s) 92, 616, 815, 1234, 1414
AlwI GGATC 2 cut(s) 639, 1260
AlwNI CAGNNNCTG 1 cut(s) 1360
Aor13HI TCCGGA 1 cut(s) 922
ApeKI GCWGC 4 cut(s) 262, 1148, 1354, 1357
ApoI RAATTY 4 cut(s) 176, 211, 318, 637
Asp700I GAANNNNTTC 1 cut(s) 486
AspLEI GCGC 1 cut(s) 302
AspS9I GGNCC 1 cut(s) 1128
AsuHPI GGTGA 5 cut(s) 1091, 1154, 1155, 1205, 1349
AvaII GGWCC 1 cut(s) 1128
AxyI CCTNAGG 1 cut(s) 93
BbsI GAAGAC 4 cut(s) 678, 833, 1011, 1215
Bbv12I GWGCWC 1 cut(s) 1312
BbvI GCAGC 4 cut(s) 249, 1135, 1344, 1366
BccI CCATC 1 cut(s) 100
BceAI ACGGC 1 cut(s) 678
BcgI CGANNNNNNTGC 2 cut(s) 1140, 1174
BciT130I CCWGG 3 cut(s) 1177, 1328, 1464
BciVI GTATCC 2 cut(s) 681, 897
BclI TGATCA 2 cut(s) 39, 372
BcoDI GTCTC 5 cut(s) 92, 616, 815, 1234, 1414
BfaI CTAG 1 cut(s) 1424
BfmI CTRYAG 1 cut(s) 720
BfuI GTATCC 2 cut(s) 681, 897
BisI GCNGC 4 cut(s) 263, 1149, 1355, 1358
BlsI GCNGC 4 cut(s) 264, 1150, 1356, 1359
Bme1390I CCNGG 3 cut(s) 1177, 1328, 1464
Bme18I GGWCC 1 cut(s) 1128
BmgBI CACGTC 1 cut(s) 1009
BmgT120I GGNCC 1 cut(s) 1128
BmiI GGNNCC 1 cut(s) 501
BmrFI CCNGG 3 cut(s) 1177, 1328, 1464
BmsI GCATC 2 cut(s) 235, 1135
BoxI GACNNNNGTC 1 cut(s) 84
BpiI GAAGAC 4 cut(s) 678, 833, 1011, 1215
BpmI CTGGAG 1 cut(s) 634
BpuEI CTTGAG 3 cut(s) 809, 1055, 1109
Bsa29I ATCGAT 1 cut(s) 941
BsaAI YACGTR 2 cut(s) 69, 452
BsaBI GATNNNNATC 2 cut(s) 110, 377
BsaI GGTCTC 2 cut(s) 92, 815
BsaJI CCNNGG 3 cut(s) 154, 198, 1176
BsaWI WCCGGW 1 cut(s) 922
BsaXI ACNNNNNCTCC 1 cut(s) 1459
Bse118I RCCGGY 1 cut(s) 1274
Bse1I ACTGG 4 cut(s) 617, 709, 1040, 1317
Bse21I CCTNAGG 1 cut(s) 93
Bse3DI GCAATG 1 cut(s) 412
Bse8I GATNNNNATC 2 cut(s) 110, 377
BseAI TCCGGA 1 cut(s) 922
BseBI CCWGG 3 cut(s) 1177, 1328, 1464
BseCI ATCGAT 1 cut(s) 941
BseDI CCNNGG 3 cut(s) 154, 198, 1176
BseGI GGATG 5 cut(s) 78, 297, 742, 898, 1006
BseJI GATNNNNATC 2 cut(s) 110, 377
BseMI GCAATG 1 cut(s) 412
BseMII CTCAG 4 cut(s) 84, 807, 1290, 1424
BseNI ACTGG 4 cut(s) 617, 709, 1040, 1317
BseRI GAGGAG 6 cut(s) 44, 47, 418, 636, 755, 1464
BseXI GCAGC 4 cut(s) 249, 1135, 1344, 1366
BsgI GTGCAG 2 cut(s) 248, 1464
Bsh1236I CGCG 1 cut(s) 123
BshVI ATCGAT 1 cut(s) 941
BsiHKAI GWGCWC 1 cut(s) 1312
BsiSI CCGG 2 cut(s) 923, 1275
BsmAI GTCTC 5 cut(s) 92, 616, 815, 1234, 1414
BsmI GAATGC 1 cut(s) 518
Bso31I GGTCTC 2 cut(s) 92, 815
Bsp1286I GDGCHC 1 cut(s) 1312
Bsp13I TCCGGA 1 cut(s) 922
Bsp143I GATC 6 cut(s) 39, 372, 631, 916, 1020, 1252
BspCNI CTCAG 4 cut(s) 85, 808, 1291, 1423
BspDI ATCGAT 1 cut(s) 941
BspEI TCCGGA 1 cut(s) 922
BspFNI CGCG 1 cut(s) 123
BspHI TCATGA 1 cut(s) 837
BspLI GGNNCC 1 cut(s) 501
BspPI GGATC 2 cut(s) 639, 1260
BspTNI GGTCTC 2 cut(s) 92, 815
BsrDI GCAATG 1 cut(s) 412
BsrFI RCCGGY 1 cut(s) 1274
BsrI ACTGG 4 cut(s) 617, 709, 1040, 1317
BssAI RCCGGY 1 cut(s) 1274
BssECI CCNNGG 3 cut(s) 154, 198, 1176
BssMI GATC 6 cut(s) 39, 372, 631, 916, 1020, 1252
Bst2UI CCWGG 3 cut(s) 1177, 1328, 1464
Bst4CI ACNGT 1 cut(s) 627
Bst6I CTCTTC 1 cut(s) 749
BstBAI YACGTR 2 cut(s) 69, 452
BstC8I GCNNGC 2 cut(s) 1382, 1483
BstDEI CTNAG 4 cut(s) 93, 816, 1299, 1410
BstDSI CCRYGG 1 cut(s) 198
BstEII GGTNACC 1 cut(s) 1079
BstF5I GGATG 5 cut(s) 78, 297, 742, 898, 1006
BstFNI CGCG 1 cut(s) 123
BstHHI GCGC 1 cut(s) 302
BstKTI GATC 6 cut(s) 42, 375, 634, 919, 1023, 1255
BstMAI GTCTC 5 cut(s) 92, 616, 815, 1234, 1414
BstMBI GATC 6 cut(s) 39, 372, 631, 916, 1020, 1252
BstMWI GCNNNNNNNGC 2 cut(s) 1351, 1412
BstNI CCWGG 3 cut(s) 1177, 1328, 1464
BstNSI RCATGY 2 cut(s) 1345, 1384
BstPAI GACNNNNGTC 1 cut(s) 84
BstPI GGTNACC 1 cut(s) 1079
BstSCI CCNGG 3 cut(s) 1175, 1326, 1462
BstSFI CTRYAG 1 cut(s) 720
BstUI CGCG 1 cut(s) 123
BstV1I GCAGC 4 cut(s) 249, 1135, 1344, 1366
BstV2I GAAGAC 4 cut(s) 678, 833, 1011, 1215
Bsu15I ATCGAT 1 cut(s) 941
Bsu36I CCTNAGG 1 cut(s) 93
BsuI GTATCC 2 cut(s) 681, 897
BsuTUI ATCGAT 1 cut(s) 941
BtgI CCRYGG 1 cut(s) 198
BtrI CACGTC 1 cut(s) 1009
BtsCI GGATG 5 cut(s) 78, 297, 742, 898, 1006
BtsIMutI CAGTG 4 cut(s) 632, 1047, 1166, 1310
Cac8I GCNNGC 2 cut(s) 1382, 1483
CaiI CAGNNNCTG 1 cut(s) 1360
CciI TCATGA 1 cut(s) 837
CfoI GCGC 1 cut(s) 302
Cfr10I RCCGGY 1 cut(s) 1274
Cfr13I GGNCC 1 cut(s) 1128
ClaI ATCGAT 1 cut(s) 941
CseI GACGC 1 cut(s) 1269
Csp6I GTAC 2 cut(s) 980, 1293
CviAII CATG 9 cut(s) 259, 766, 838, 847, 961, 1139, 1342, 1381, 1432
CviQI GTAC 2 cut(s) 980, 1293
DdeI CTNAG 4 cut(s) 93, 816, 1299, 1410
DpnI GATC 6 cut(s) 41, 374, 633, 918, 1022, 1254
DpnII GATC 6 cut(s) 39, 372, 631, 916, 1020, 1252
Eam1104I CTCTTC 1 cut(s) 749
EarI CTCTTC 1 cut(s) 749
Eco31I GGTCTC 2 cut(s) 92, 815
Eco32I GATATC 1 cut(s) 1460
Eco47I GGWCC 1 cut(s) 1128
Eco57I CTGAAG 3 cut(s) 297, 432, 845
Eco81I CCTNAGG 1 cut(s) 93
Eco91I GGTNACC 1 cut(s) 1079
EcoO65I GGTNACC 1 cut(s) 1079
EcoRII CCWGG 3 cut(s) 1175, 1326, 1462
EcoRV GATATC 1 cut(s) 1460
FaeI CATG 9 cut(s) 262, 769, 841, 850, 964, 1142, 1345, 1384, 1435
FalI AAGNNNNNCTT 4 cut(s) 199, 231, 771, 803
FatI CATG 9 cut(s) 258, 765, 837, 846, 960, 1138, 1341, 1380, 1431
FbaI TGATCA 2 cut(s) 39, 372
FblI GTMKAC 2 cut(s) 606, 1047
Fnu4HI GCNGC 4 cut(s) 263, 1149, 1355, 1358
FokI GGATG 5 cut(s) 85, 304, 749, 905, 1013
Fsp4HI GCNGC 4 cut(s) 263, 1149, 1355, 1358
FspBI CTAG 1 cut(s) 1424
GlaI GCGC 1 cut(s) 301
GluI GCNGC 4 cut(s) 263, 1149, 1355, 1358
GsuI CTGGAG 1 cut(s) 634
HapII CCGG 2 cut(s) 923, 1275
HgaI GACGC 1 cut(s) 1269
HhaI GCGC 1 cut(s) 302
Hin1II CATG 9 cut(s) 262, 769, 841, 850, 964, 1142, 1345, 1384, 1435
Hin6I GCGC 1 cut(s) 300
HinP1I GCGC 1 cut(s) 300
HincII GTYRAC 1 cut(s) 660
HindII GTYRAC 1 cut(s) 660
HinfI GANTC 2 cut(s) 584, 870
HpaII CCGG 2 cut(s) 923, 1275
HphI GGTGA 5 cut(s) 1091, 1154, 1155, 1205, 1349
Hpy166II GTNNAC 4 cut(s) 607, 660, 1048, 1284
Hpy188I TCNGA 8 cut(s) 79, 277, 462, 589, 636, 670, 1234, 1257
Hpy8I GTNNAC 4 cut(s) 607, 660, 1048, 1284
HpyAV CCTTC 1 cut(s) 1106
HpyCH4III ACNGT 1 cut(s) 627
HpyCH4IV ACGT 5 cut(s) 68, 138, 339, 451, 1008
HpyCH4V TGCA 6 cut(s) 234, 265, 960, 1026, 1151, 1481
HpyF10VI GCNNNNNNNGC 2 cut(s) 1351, 1412
HpyF3I CTNAG 4 cut(s) 93, 816, 1299, 1410
HpySE526I ACGT 5 cut(s) 68, 138, 339, 451, 1008
Hsp92II CATG 9 cut(s) 262, 769, 841, 850, 964, 1142, 1345, 1384, 1435
HspAI GCGC 1 cut(s) 300
Kpn2I TCCGGA 1 cut(s) 922
Ksp22I TGATCA 2 cut(s) 39, 372
Kzo9I GATC 6 cut(s) 39, 372, 631, 916, 1020, 1252
LmnI GCTCC 2 cut(s) 223, 1389
Lsp1109I GCAGC 4 cut(s) 249, 1135, 1344, 1366
LweI GCATC 2 cut(s) 235, 1135
MaeI CTAG 1 cut(s) 1424
MaeII ACGT 5 cut(s) 68, 138, 339, 451, 1008
MaeIII GTNAC 6 cut(s) 190, 574, 857, 1079, 1161, 1337
MalI GATC 6 cut(s) 41, 374, 633, 918, 1022, 1254
MboI GATC 6 cut(s) 39, 372, 631, 916, 1020, 1252
MfeI CAATTG 1 cut(s) 1267
MhlI GDGCHC 1 cut(s) 1312
MluCI AATT 9 cut(s) 176, 211, 318, 393, 416, 637, 678, 1267, 1388
MluI ACGCGT 1 cut(s) 121
MmeI TCCRAC 1 cut(s) 57
MroI TCCGGA 1 cut(s) 922
MroXI GAANNNNTTC 1 cut(s) 486
MseI TTAA 4 cut(s) 206, 419, 746, 1217
MslI CAYNNNNRTG 3 cut(s) 156, 933, 1143
MspA1I CMGCKG 1 cut(s) 1357
MspI CCGG 2 cut(s) 923, 1275
MspR9I CCNGG 3 cut(s) 1177, 1328, 1464
MunI CAATTG 1 cut(s) 1267
Mva1269I GAATGC 1 cut(s) 518
MvaI CCWGG 3 cut(s) 1177, 1328, 1464
MvnI CGCG 1 cut(s) 123
MwoI GCNNNNNNNGC 2 cut(s) 1351, 1412
NdeII GATC 6 cut(s) 39, 372, 631, 916, 1020, 1252
NlaIII CATG 9 cut(s) 262, 769, 841, 850, 964, 1142, 1345, 1384, 1435
NlaIV GGNNCC 1 cut(s) 501
NmuCI GTSAC 4 cut(s) 574, 1079, 1161, 1337
NspI RCATGY 2 cut(s) 1345, 1384
OliI CACNNNNGTG 1 cut(s) 156
PaeI GCATGC 1 cut(s) 1384
PagI TCATGA 1 cut(s) 837
PctI GAATGC 1 cut(s) 518
PdmI GAANNNNTTC 1 cut(s) 486
PfeI GAWTC 2 cut(s) 584, 870
PfoI TCCNGGA 1 cut(s) 1462
PkrI GCNGC 4 cut(s) 264, 1150, 1356, 1359
Ppu21I YACGTR 2 cut(s) 69, 452
PshAI GACNNNNGTC 1 cut(s) 84
Psp6I CCWGG 3 cut(s) 1175, 1326, 1462
PspEI GGTNACC 1 cut(s) 1079
PspGI CCWGG 3 cut(s) 1175, 1326, 1462
PspN4I GGNNCC 1 cut(s) 501
PspPI GGNCC 1 cut(s) 1128
PstNI CAGNNNCTG 1 cut(s) 1360
PvuII CAGCTG 1 cut(s) 1357
RsaI GTAC 2 cut(s) 981, 1294
RsaNI GTAC 2 cut(s) 980, 1293
RseI CAYNNNNRTG 3 cut(s) 156, 933, 1143
SaqAI TTAA 4 cut(s) 206, 419, 746, 1217
SatI GCNGC 4 cut(s) 263, 1149, 1355, 1358
Sau3AI GATC 6 cut(s) 39, 372, 631, 916, 1020, 1252
Sau96I GGNCC 1 cut(s) 1128
ScrFI CCNGG 3 cut(s) 1177, 1328, 1464
SduI GDGCHC 1 cut(s) 1312
SfaNI GCATC 2 cut(s) 235, 1135
SfcI CTRYAG 1 cut(s) 720
SinI GGWCC 1 cut(s) 1128
SmiMI CAYNNNNRTG 3 cut(s) 156, 933, 1143
SmlI CTYRAG 3 cut(s) 788, 1034, 1088
SmoI CTYRAG 3 cut(s) 788, 1034, 1088
SphI GCATGC 1 cut(s) 1384
Sse9I AATT 9 cut(s) 176, 211, 318, 393, 416, 637, 678, 1267, 1388
SspMI CTAG 1 cut(s) 1424
StyD4I CCNGG 3 cut(s) 1175, 1326, 1462
TaaI ACNGT 1 cut(s) 627
TaiI ACGT 5 cut(s) 71, 141, 342, 454, 1011
TaqI TCGA 5 cut(s) 649, 941, 1019, 1072, 1372
TaqII GACCGA 1 cut(s) 1098
TasI AATT 9 cut(s) 176, 211, 318, 393, 416, 637, 678, 1267, 1388
TfiI GAWTC 2 cut(s) 584, 870
Tru1I TTAA 4 cut(s) 206, 419, 746, 1217
Tru9I TTAA 4 cut(s) 206, 419, 746, 1217
TscAI CASTG 4 cut(s) 632, 1047, 1173, 1317
TseFI GTSAC 4 cut(s) 574, 1079, 1161, 1337
TseI GCWGC 4 cut(s) 262, 1148, 1354, 1357
Tsp45I GTSAC 4 cut(s) 574, 1079, 1161, 1337
TspDTI ATGAA 6 cut(s) 116, 525, 608, 863, 977, 1017
TspGWI ACGGA 2 cut(s) 131, 1432
TspRI CASTG 4 cut(s) 632, 1047, 1173, 1317
VpaK11BI GGWCC 1 cut(s) 1128
XapI RAATTY 4 cut(s) 176, 211, 318, 637
XceI RCATGY 2 cut(s) 1345, 1384
XmiI GTMKAC 2 cut(s) 606, 1047
XmnI GAANNNNTTC 1 cut(s) 486
XspI CTAG 1 cut(s) 1424
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.