Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0002268

Physical Location & Seq

Genomic Coordinates Reverse (-)

15443094 .. 15448207

Gene Structure 5114 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G013120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGAGAGACTCTGGGTATCTGCCAAAAATAAAGTTTTTGAATGTCATTCTTCTTTTACAATATGTGCCGAACATTCTCCGACTCCGCCAATCGTACAAGAGATTACAACTGACCGAAAAATTGGTTAGAGGTGTATTCAATTTCTTCTTATACATCGTGGCTAGTCACGTAGTTGGAGCTTTTTGGTATTTTTTTTCTATCGAACGAGAGACCTCATGTTGGCTTCAAGCATGTAAAAATATTGTTGGATGTATAGTCACTCATTGCGGTGATAGTACTCCAACAAATGACGCATTCCTTGATAGATCATGTCCGATAAATCCCTCAAATGCTACCCTGTTCGACTTTGGAATGTTTCTTGACACTATTCAGTCTGGCTATACAAGACAAATGAGTTTTCCAAAGAAGTTCTTTTATTCTTTCTGGTGGGGTCTCAAGAATCTAAGCAATTTTGGGACTAATCTTGAAACAAGTAGCTACGTGTGGGAAAATTGCTTTGCAATTCTTGTTTCAATTACTGGCTTGCTGCTCTTTTTATATCTCATTGGAAATGTGCAGGCATATATGCAATTTTCAAAATCAAAAGAGATGGACGAGGAGGAGTTAACAAAAAGGATGAAGGAGAAAGAGGATGCTATACGCCTGTATTTGACACCAAGAAATGGTCTTCCTGAAGATATCACGAGACAAATCATGGCAAACATAAAACATGACATACTGAAAAAGAAACTTGATACAGTTGTAGATATGGACCTTTTGCTCTCACTTGTTCCCTGGAATATTGAAATCTCCATCAAGCAGCACGTGGGCATGAATGCGGTCAAAAATGTATGTTTTTTGAACTCTCTCTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

284

Amino Acids

32.94

Weight (kDa)

8.74

Isoelectric Point (pI)

46.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002268)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g19150 FvH4_4g19150 FvH4_4g19150 FvH4_4g19150 FvH4_4g19150 FvH4_4g19150 FvH4_4g19150
prunus_persica	Prupe.4G109500_v2.0.a1 Prupe.4G109500_v2.0.a1 Prupe.4G109500_v2.0.a1 Prupe.4G109600_v2.0.a1 Prupe.4G109900_v2.0.a1 Prupe.4G263700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0424091 RchiOBHm_Chr5g0019831 RchiOBHm_Chr5g0020211 RchiOBHm_Chr5g0020221
rosa_laevigata	RLG00000007504
rosa_multiflora	Rmu_co8478429.1_g000001 Rmu_sc0002260.1_g000052 Rmu_sc0002260.1_g000058 Rmu_sc0002260.1_g000060
rosa_roxburghii	Rroxscaffold_5G00366100
rosa_rugosa	Rorug04G0192900 Rorug04G0193000 Rorug04G0193100 Rorug04G0193100 Rorug04G0193100 Rorug07G0254600
rosa_samantha	Rh4AG251200 Rh4BG256200 Rh4BG256300 Rh4CG266700 Rh4DG250800 Rh4DG250900 Rh5AG148300 Rh5AG366200 Rh5AG366300 Rh5CG159200
rosa_wichuraiana	Rw4G021640 Rw5G013110 Rw5G013120 Rw5G034340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	662
AciI	CCGC	3 cut(s)	85, 267, 818
AcuI	CTGAAG	1 cut(s)	693
AcvI	CACGTG	1 cut(s)	805
AfaI	GTAC	2 cut(s)	95, 277
AfiI	CCNNNNNNNGG	2 cut(s)	219, 662
AflIII	ACRYGT	1 cut(s)	480
AgsI	TTSAA	8 cut(s)	40, 139, 227, 467, 513, 576, 785, 841
AjnI	CCWGG	1 cut(s)	773
AloI	GAACNNNNNNTCC	1 cut(s)	833
AluBI	AGCT	2 cut(s)	179, 477
AluI	AGCT	2 cut(s)	179, 477
Alw26I	GTCTC	3 cut(s)	203, 437, 679
ApeKI	GCWGC	2 cut(s)	526, 799
AspS9I	GGNCC	1 cut(s)	751
AsuHPI	GGTGA	1 cut(s)	281
AvaII	GGWCC	1 cut(s)	751
BaeI	ACNNNNGTAYC	2 cut(s)	726, 759
BauI	CACGAG	1 cut(s)	682
BbrPI	CACGTG	1 cut(s)	805
BbsI	GAAGAC	1 cut(s)	659
BbvI	GCAGC	2 cut(s)	513, 811
BccI	CCATC	2 cut(s)	583, 800
BciT130I	CCWGG	1 cut(s)	775
BcoDI	GTCTC	3 cut(s)	203, 437, 679
BfaI	CTAG	1 cut(s)	162
BisI	GCNGC	2 cut(s)	527, 800
BlsI	GCNGC	2 cut(s)	528, 801
BmcAI	AGTACT	1 cut(s)	277
Bme1390I	CCNGG	1 cut(s)	775
Bme18I	GGWCC	1 cut(s)	751
BmgT120I	GGNCC	1 cut(s)	751
BmrFI	CCNGG	1 cut(s)	775
BmsI	GCATC	1 cut(s)	622
BpiI	GAAGAC	1 cut(s)	659
BpuEI	CTTGAG	1 cut(s)	419
BsaAI	YACGTR	3 cut(s)	169, 481, 805
BsaI	GGTCTC	2 cut(s)	203, 437
BsaJI	CCNNGG	1 cut(s)	773
BsaXI	ACNNNNNCTCC	1 cut(s)	833
Bsc4I	CCNNNNNNNGG	2 cut(s)	219, 662
Bse1I	ACTGG	1 cut(s)	523
Bse3DI	GCAATG	1 cut(s)	262
BseBI	CCWGG	1 cut(s)	775
BseDI	CCNNGG	1 cut(s)	773
BseGI	GGATG	3 cut(s)	254, 621, 637
BseLI	CCNNNNNNNGG	2 cut(s)	219, 662
BseMI	GCAATG	1 cut(s)	262
BseNI	ACTGG	1 cut(s)	523
BseRI	GAGGAG	2 cut(s)	611, 614
BseXI	GCAGC	2 cut(s)	513, 811
BsgI	GTGCAG	1 cut(s)	575
BslFI	GGGAC	1 cut(s)	469
BslI	CCNNNNNNNGG	2 cut(s)	219, 662
BsmAI	GTCTC	3 cut(s)	203, 437, 679
BsmFI	GGGAC	1 cut(s)	469
BsmI	GAATGC	2 cut(s)	293, 820
Bso31I	GGTCTC	2 cut(s)	203, 437
Bsp143I	GATC	1 cut(s)	305
BspACI	CCGC	3 cut(s)	85, 267, 818
BspTNI	GGTCTC	2 cut(s)	203, 437
BsrDI	GCAATG	1 cut(s)	262
BsrI	ACTGG	1 cut(s)	523
BssECI	CCNNGG	1 cut(s)	773
BssMI	GATC	1 cut(s)	305
BssSI	CACGAG	1 cut(s)	682
Bst2BI	CACGAG	1 cut(s)	682
Bst2UI	CCWGG	1 cut(s)	775
Bst4CI	ACNGT	1 cut(s)	739
BstBAI	YACGTR	3 cut(s)	169, 481, 805
BstC8I	GCNNGC	2 cut(s)	524, 558
BstDEI	CTNAG	1 cut(s)	443
BstF5I	GGATG	3 cut(s)	254, 621, 637
BstKTI	GATC	1 cut(s)	308
BstMAI	GTCTC	3 cut(s)	203, 437, 679
BstMBI	GATC	1 cut(s)	305
BstNI	CCWGG	1 cut(s)	775
BstNSI	RCATGY	1 cut(s)	234
BstSCI	CCNGG	1 cut(s)	773
BstV1I	GCAGC	2 cut(s)	513, 811
BstV2I	GAAGAC	1 cut(s)	659
BtsCI	GGATG	3 cut(s)	254, 621, 637
Cac8I	GCNNGC	2 cut(s)	524, 558
Cfr13I	GGNCC	1 cut(s)	751
CseI	GACGC	1 cut(s)	299
Csp6I	GTAC	2 cut(s)	94, 276
CviAII	CATG	6 cut(s)	216, 231, 309, 694, 710, 811
CviJI	RGCY	6 cut(s)	161, 179, 223, 378, 477, 522
CviKI_1	RGCY	6 cut(s)	161, 179, 223, 378, 477, 522
CviQI	GTAC	2 cut(s)	94, 276
DdeI	CTNAG	1 cut(s)	443
DpnI	GATC	1 cut(s)	307
DpnII	GATC	1 cut(s)	305
EciI	GGCGGA	1 cut(s)	74
Eco31I	GGTCTC	2 cut(s)	203, 437
Eco32I	GATATC	1 cut(s)	679
Eco47I	GGWCC	1 cut(s)	751
Eco57I	CTGAAG	1 cut(s)	693
Eco72I	CACGTG	1 cut(s)	805
EcoRII	CCWGG	1 cut(s)	773
EcoRV	GATATC	1 cut(s)	679
FaeI	CATG	6 cut(s)	219, 234, 312, 697, 713, 814
FalI	AAGNNNNNCTT	2 cut(s)	395, 427
FaqI	GGGAC	1 cut(s)	469
FatI	CATG	6 cut(s)	215, 230, 308, 693, 709, 810
Fnu4HI	GCNGC	2 cut(s)	527, 800
FokI	GGATG	3 cut(s)	261, 628, 644
Fsp4HI	GCNGC	2 cut(s)	527, 800
FspBI	CTAG	1 cut(s)	162
GluI	GCNGC	2 cut(s)	527, 800
HgaI	GACGC	1 cut(s)	299
Hin1II	CATG	6 cut(s)	219, 234, 312, 697, 713, 814
HincII	GTYRAC	1 cut(s)	606
HindII	GTYRAC	1 cut(s)	606
HinfI	GANTC	3 cut(s)	8, 81, 439
HpaI	GTTAAC	1 cut(s)	606
HphI	GGTGA	1 cut(s)	281
Hpy166II	GTNNAC	1 cut(s)	606
Hpy188I	TCNGA	2 cut(s)	80, 315
Hpy188III	TCNNGA	5 cut(s)	359, 436, 464, 671, 682
Hpy8I	GTNNAC	1 cut(s)	606
HpyAV	CCTTC	1 cut(s)	613
HpyCH4III	ACNGT	1 cut(s)	739
HpyCH4IV	ACGT	3 cut(s)	168, 480, 804
HpyCH4V	TGCA	3 cut(s)	500, 556, 568
HpyF3I	CTNAG	1 cut(s)	443
HpySE526I	ACGT	3 cut(s)	168, 480, 804
Hsp92II	CATG	6 cut(s)	219, 234, 312, 697, 713, 814
KspAI	GTTAAC	1 cut(s)	606
Kzo9I	GATC	1 cut(s)	305
LmnI	GCTCC	1 cut(s)	176
LpnPI	CCDG	9 cut(s)	350, 360, 409, 504, 542, 656, 684, 760, 787
Lsp1109I	GCAGC	2 cut(s)	513, 811
LweI	GCATC	1 cut(s)	622
MaeI	CTAG	1 cut(s)	162
MaeII	ACGT	3 cut(s)	168, 480, 804
MaeIII	GTNAC	2 cut(s)	164, 256
MalI	GATC	1 cut(s)	307
MboI	GATC	1 cut(s)	305
MboII	GAAGA	4 cut(s)	41, 136, 659, 686
MluCI	AATT	7 cut(s)	119, 139, 448, 490, 501, 513, 569
MlyI	GAGTC	2 cut(s)	2, 75
MmeI	TCCRAC	4 cut(s)	103, 154, 226, 305
MnlI	CCTC	6 cut(s)	122, 223, 334, 589, 592, 622
MseI	TTAA	1 cut(s)	605
MslI	CAYNNNNRTG	1 cut(s)	267
MspR9I	CCNGG	1 cut(s)	775
Mva1269I	GAATGC	2 cut(s)	293, 820
MvaI	CCWGG	1 cut(s)	775
NdeII	GATC	1 cut(s)	305
NlaIII	CATG	6 cut(s)	219, 234, 312, 697, 713, 814
NmuCI	GTSAC	2 cut(s)	164, 256
NspI	RCATGY	1 cut(s)	234
PctI	GAATGC	2 cut(s)	293, 820
PfeI	GAWTC	1 cut(s)	439
PflMI	CCANNNNNTGG	1 cut(s)	662
PkrI	GCNGC	2 cut(s)	528, 801
PleI	GAGTC	2 cut(s)	2, 75
PmaCI	CACGTG	1 cut(s)	805
PmlI	CACGTG	1 cut(s)	805
PpsI	GAGTC	2 cut(s)	2, 75
Ppu21I	YACGTR	3 cut(s)	169, 481, 805
Psp6I	CCWGG	1 cut(s)	773
PspCI	CACGTG	1 cut(s)	805
PspGI	CCWGG	1 cut(s)	773
PspPI	GGNCC	1 cut(s)	751
RsaI	GTAC	2 cut(s)	95, 277
RsaNI	GTAC	2 cut(s)	94, 276
RseI	CAYNNNNRTG	1 cut(s)	267
SaqAI	TTAA	1 cut(s)	605
SatI	GCNGC	2 cut(s)	527, 800
Sau3AI	GATC	1 cut(s)	305
Sau96I	GGNCC	1 cut(s)	751
ScaI	AGTACT	1 cut(s)	277
SchI	GAGTC	2 cut(s)	2, 75
ScrFI	CCNGG	1 cut(s)	775
SetI	ASST	8 cut(s)	133, 171, 181, 215, 479, 483, 756, 807
SfaNI	GCATC	1 cut(s)	622
SinI	GGWCC	1 cut(s)	751
SmiMI	CAYNNNNRTG	1 cut(s)	267
SmlI	CTYRAG	1 cut(s)	434
SmoI	CTYRAG	1 cut(s)	434
Sse9I	AATT	7 cut(s)	119, 139, 448, 490, 501, 513, 569
SsiI	CCGC	3 cut(s)	85, 267, 818
SspI	AATATT	2 cut(s)	241, 781
SspMI	CTAG	1 cut(s)	162
StyD4I	CCNGG	1 cut(s)	773
TaaI	ACNGT	1 cut(s)	739
TaiI	ACGT	3 cut(s)	171, 483, 807
TaqI	TCGA	2 cut(s)	201, 342
TaqII	GACCGA	1 cut(s)	128
TasI	AATT	7 cut(s)	119, 139, 448, 490, 501, 513, 569
TatI	WGTACW	1 cut(s)	275
TfiI	GAWTC	1 cut(s)	439
Tru1I	TTAA	1 cut(s)	605
Tru9I	TTAA	1 cut(s)	605
TseFI	GTSAC	2 cut(s)	164, 256
TseI	GCWGC	2 cut(s)	526, 799
Tsp45I	GTSAC	2 cut(s)	164, 256
TspDTI	ATGAA	2 cut(s)	632, 827
Van91I	CCANNNNNTGG	1 cut(s)	662
VpaK11BI	GGWCC	1 cut(s)	751
XceI	RCATGY	1 cut(s)	234
XspI	CTAG	1 cut(s)	162
ZrmI	AGTACT	1 cut(s)	277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.