Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002268

Physical Location & Seq

Genomic Coordinates Reverse (-)

14479477 .. 14482347

Gene Structure 2871 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ30033

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

ATGGCCATACCTTTCTCTTTTGTCAGCATTAATTCATCAAATCGTCAAGTGCGTCAAAGAAACACATCCTCAACTTCATCCCCAAGTCCAACGAGAGAATCCGACGAGGAAAGTCTTAAACCAAAGTCAGAGGAGTCGACCATGCTTCGATCGTGGAAGATTACTGTTGTAGTTTCATGTGTGATTGCAGTCTTAGCGGATCCTTTGTTTCTTTACATTCCACTTATCAATGACAAAAGCAAATGCCTTGGAATGGACAAAAAGCTAAGGATTGTCGCTCTCCTTCTGCGATCACTTACGGACATCGTTTTCATAATCGATATTATACGTCAAGTCCGTGAAAGAAATACAATGATGGCAAAAGTAACATCACTGTCAAGTTCTTGCACTTCCACTCCGAAAAATATAGAAGAACTAGCAAAAGAAGAGACCAGGAAGAAGCGGCAGTTTTATGTATCAATAATAATTCATTTGCTCGCCGTGCTTCCCATCCCACAGGTATCAGTACTGGTTGTCTTTTTCAGAATGAGAGACTCTGGGTATCTGCCAAAAATAAAGGTTTTGAATGTCATTCTTCTTTTACAATATGTGCCGAACATTCTCCGACTCCGCCAATCGTACAAGAGATTACAACTGACCGAAAAATTGGTTAGAGGTGTATTCAATTTCTTCTTATACGTCGTGGCTAGTCACGTAGTTGGAGCTTTTTGGTATTTTTTTTCTATTGAACGAGAGACCTCATGTTGGCTTCAAGCATGTAAAAATATTGTTGGATGTATAGTCACTCATTGCGGTGATAGTACTCCAACAAATGACGCATTCCTTGATAGATCATGTCCGATAAATCCCTCAAATGCTACCCTGTTCGACTTTGGAATGTTTCTTGACACTATTCAGTCTGGCTATACAAGACAGATGAGTTTTCCAAAGAAGTTCTTTTATTCTTTCTGGTGGGGTCTCAAGAATCTAAGCAATTTTGGGACTAATCTTGAAACAAGTAGCTACGTGTGGGAAAATTGCTTTGCAATTCTTATTTCAATTACTGGCTTGTTGCTCTTTTTATATCTCATTGGGAATGTGCAGGTACTTATTTCCAAACCAATTTGGACCTGTGTGTCCAAATTTTCTCTCTTATTTGCCTACATTCGACATTCCAAATCCATGATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

389

Amino Acids

44.55

Weight (kDa)

9.55

Isoelectric Point (pI)

48.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002268)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g19150 FvH4_4g19150 FvH4_4g19150 FvH4_4g19150 FvH4_4g19150 FvH4_4g19150 FvH4_4g19150
prunus_persica	Prupe.4G109500_v2.0.a1 Prupe.4G109500_v2.0.a1 Prupe.4G109500_v2.0.a1 Prupe.4G109600_v2.0.a1 Prupe.4G109900_v2.0.a1 Prupe.4G263700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0424091 RchiOBHm_Chr5g0019831 RchiOBHm_Chr5g0020211 RchiOBHm_Chr5g0020221
rosa_laevigata	RLG00000007504
rosa_multiflora	Rmu_co8478429.1_g000001 Rmu_sc0002260.1_g000052 Rmu_sc0002260.1_g000058 Rmu_sc0002260.1_g000060
rosa_roxburghii	Rroxscaffold_5G00366100
rosa_rugosa	Rorug04G0192900 Rorug04G0193000 Rorug04G0193100 Rorug04G0193100 Rorug04G0193100 Rorug07G0254600
rosa_samantha	Rh4AG251200 Rh4BG256200 Rh4BG256300 Rh4CG266700 Rh4DG250800 Rh4DG250900 Rh5AG148300 Rh5AG366200 Rh5AG366300 Rh5CG159200
rosa_wichuraiana	Rw4G021640 Rw5G013110 Rw5G013120 Rw5G034340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1114
Acc36I	ACCTGC	1 cut(s)	1072
AccI	GTMKAC	1 cut(s)	137
AciI	CCGC	4 cut(s)	197, 442, 610, 792
AclWI	GGATC	2 cut(s)	194, 207
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	1121
AfaI	GTAC	4 cut(s)	507, 620, 802, 1086
AfiI	CCNNNNNNNGG	2 cut(s)	253, 744
AflIII	ACRYGT	1 cut(s)	1005
AgsI	TTSAA	6 cut(s)	565, 664, 728, 752, 992, 1038
AjnI	CCWGG	1 cut(s)	431
AluBI	AGCT	3 cut(s)	265, 704, 1002
AluI	AGCT	3 cut(s)	265, 704, 1002
Alw26I	GTCTC	4 cut(s)	422, 525, 728, 962
AlwI	GGATC	2 cut(s)	194, 207
AoxI	GGCC	1 cut(s)	3
ApoI	RAATTY	1 cut(s)	1121
AseI	ATTAAT	1 cut(s)	30
AspS9I	GGNCC	1 cut(s)	1107
AsuHPI	GGTGA	1 cut(s)	806
AvaII	GGWCC	1 cut(s)	1107
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	199
BccI	CCATC	2 cut(s)	349, 497
BceAI	ACGGC	1 cut(s)	464
BciT130I	CCWGG	1 cut(s)	433
BcoDI	GTCTC	4 cut(s)	422, 525, 728, 962
BfaI	CTAG	2 cut(s)	416, 687
BfuAI	ACCTGC	1 cut(s)	1072
BisI	GCNGC	1 cut(s)	443
BlsI	GCNGC	1 cut(s)	444
BmcAI	AGTACT	2 cut(s)	507, 802
Bme1390I	CCNGG	1 cut(s)	433
Bme18I	GGWCC	1 cut(s)	1107
BmgT120I	GGNCC	1 cut(s)	1107
BmiI	GGNNCC	1 cut(s)	201
BmrFI	CCNGG	1 cut(s)	433
Bpu10I	CCTNAGC	1 cut(s)	266
BpuEI	CTTGAG	1 cut(s)	944
Bsa29I	ATCGAT	1 cut(s)	318
BsaAI	YACGTR	2 cut(s)	694, 1006
BsaI	GGTCTC	3 cut(s)	422, 728, 962
BsaJI	CCNNGG	1 cut(s)	247
BsaXI	ACNNNNNCTCC	2 cut(s)	379, 409
Bsc4I	CCNNNNNNNGG	2 cut(s)	253, 744
Bse1I	ACTGG	2 cut(s)	513, 1048
Bse3DI	GCAATG	1 cut(s)	787
BseBI	CCWGG	1 cut(s)	433
BseCI	ATCGAT	1 cut(s)	318
BseDI	CCNNGG	1 cut(s)	247
BseGI	GGATG	4 cut(s)	65, 77, 489, 779
BseLI	CCNNNNNNNGG	2 cut(s)	253, 744
BseMI	GCAATG	1 cut(s)	787
BseNI	ACTGG	2 cut(s)	513, 1048
BseRI	GAGGAG	1 cut(s)	146
BsgI	GTGCAG	1 cut(s)	1100
Bsh1285I	CGRYCG	1 cut(s)	152
BshFI	GGCC	1 cut(s)	5
BshVI	ATCGAT	1 cut(s)	318
BsiEI	CGRYCG	1 cut(s)	152
BslFI	GGGAC	1 cut(s)	994
BslI	CCNNNNNNNGG	2 cut(s)	253, 744
BsmAI	GTCTC	4 cut(s)	422, 525, 728, 962
BsmFI	GGGAC	1 cut(s)	994
BsmI	GAATGC	1 cut(s)	818
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	3 cut(s)	422, 728, 962
Bsp143I	GATC	4 cut(s)	149, 199, 290, 830
BspACI	CCGC	4 cut(s)	197, 442, 610, 792
BspANI	GGCC	1 cut(s)	5
BspDI	ATCGAT	1 cut(s)	318
BspLI	GGNNCC	1 cut(s)	201
BspMI	ACCTGC	1 cut(s)	1072
BspPI	GGATC	2 cut(s)	194, 207
BspTNI	GGTCTC	3 cut(s)	422, 728, 962
BsrDI	GCAATG	1 cut(s)	787
BsrI	ACTGG	2 cut(s)	513, 1048
BssECI	CCNNGG	1 cut(s)	247
BssMI	GATC	4 cut(s)	149, 199, 290, 830
BssT1I	CCWWGG	1 cut(s)	247
Bst2UI	CCWGG	1 cut(s)	433
Bst4CI	ACNGT	2 cut(s)	166, 375
Bst6I	CTCTTC	1 cut(s)	420
BstBAI	YACGTR	2 cut(s)	694, 1006
BstC8I	GCNNGC	1 cut(s)	477
BstDEI	CTNAG	3 cut(s)	193, 266, 968
BstF5I	GGATG	4 cut(s)	65, 77, 489, 779
BstKTI	GATC	4 cut(s)	152, 202, 293, 833
BstMAI	GTCTC	4 cut(s)	422, 525, 728, 962
BstMBI	GATC	4 cut(s)	149, 199, 290, 830
BstMCI	CGRYCG	1 cut(s)	152
BstMWI	GCNNNNNNNGC	2 cut(s)	194, 481
BstNI	CCWGG	1 cut(s)	433
BstNSI	RCATGY	1 cut(s)	759
BstSCI	CCNGG	1 cut(s)	431
BstX2I	RGATCY	1 cut(s)	199
BstYI	RGATCY	1 cut(s)	199
Bsu15I	ATCGAT	1 cut(s)	318
BsuRI	GGCC	1 cut(s)	5
BsuTUI	ATCGAT	1 cut(s)	318
BtsCI	GGATG	4 cut(s)	65, 77, 489, 779
BtsIMutI	CAGTG	1 cut(s)	371
BveI	ACCTGC	1 cut(s)	1072
Cac8I	GCNNGC	1 cut(s)	477
Cfr13I	GGNCC	1 cut(s)	1107
ClaI	ATCGAT	1 cut(s)	318
CseI	GACGC	2 cut(s)	41, 824
Csp6I	GTAC	4 cut(s)	506, 619, 801, 1085
CviAII	CATG	6 cut(s)	142, 177, 741, 756, 834, 1162
CviJI	RGCY	8 cut(s)	5, 265, 686, 704, 748, 903, 1002, 1047
CviKI_1	RGCY	8 cut(s)	5, 265, 686, 704, 748, 903, 1002, 1047
CviQI	GTAC	4 cut(s)	506, 619, 801, 1085
DdeI	CTNAG	3 cut(s)	193, 266, 968
DpnI	GATC	4 cut(s)	151, 201, 292, 832
DpnII	GATC	4 cut(s)	149, 199, 290, 830
DrdI	GACNNNNNNGTC	1 cut(s)	1114
DseDI	GACNNNNNNGTC	1 cut(s)	1114
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	420
EarI	CTCTTC	1 cut(s)	420
EciI	GGCGGA	1 cut(s)	599
Eco130I	CCWWGG	1 cut(s)	247
Eco31I	GGTCTC	3 cut(s)	422, 728, 962
Eco47I	GGWCC	1 cut(s)	1107
EcoRII	CCWGG	1 cut(s)	431
EcoT14I	CCWWGG	1 cut(s)	247
ErhI	CCWWGG	1 cut(s)	247
FaeI	CATG	6 cut(s)	145, 180, 744, 759, 837, 1165
FalI	AAGNNNNNCTT	2 cut(s)	920, 952
FaqI	GGGAC	1 cut(s)	994
FatI	CATG	6 cut(s)	141, 176, 740, 755, 833, 1161
FblI	GTMKAC	1 cut(s)	137
Fnu4HI	GCNGC	1 cut(s)	443
FokI	GGATG	4 cut(s)	52, 64, 476, 786
Fsp4HI	GCNGC	1 cut(s)	443
FspBI	CTAG	2 cut(s)	416, 687
GluI	GCNGC	1 cut(s)	443
HaeIII	GGCC	1 cut(s)	5
HgaI	GACGC	2 cut(s)	41, 824
Hin1II	CATG	6 cut(s)	145, 180, 744, 759, 837, 1165
HincII	GTYRAC	1 cut(s)	138
HindII	GTYRAC	1 cut(s)	138
HinfI	GANTC	5 cut(s)	98, 134, 533, 606, 964
HphI	GGTGA	1 cut(s)	806
Hpy166II	GTNNAC	1 cut(s)	138
Hpy188I	TCNGA	6 cut(s)	103, 130, 399, 524, 605, 840
Hpy188III	TCNNGA	3 cut(s)	884, 961, 989
Hpy8I	GTNNAC	1 cut(s)	138
Hpy99I	CGWCG	2 cut(s)	107, 683
HpyAV	CCTTC	1 cut(s)	293
HpyCH4III	ACNGT	2 cut(s)	166, 375
HpyCH4IV	ACGT	4 cut(s)	328, 678, 693, 1005
HpyCH4V	TGCA	4 cut(s)	188, 387, 1025, 1081
HpyF10VI	GCNNNNNNNGC	2 cut(s)	194, 481
HpyF3I	CTNAG	3 cut(s)	193, 266, 968
HpySE526I	ACGT	4 cut(s)	328, 678, 693, 1005
Hsp92II	CATG	6 cut(s)	145, 180, 744, 759, 837, 1165
Kzo9I	GATC	4 cut(s)	149, 199, 290, 830
LmnI	GCTCC	1 cut(s)	701
MaeI	CTAG	2 cut(s)	416, 687
MaeII	ACGT	4 cut(s)	328, 678, 693, 1005
MaeIII	GTNAC	3 cut(s)	364, 689, 781
MalI	GATC	4 cut(s)	151, 201, 292, 832
MboI	GATC	4 cut(s)	149, 199, 290, 830
MboII	GAAGA	6 cut(s)	169, 422, 437, 448, 566, 661
MflI	RGATCY	1 cut(s)	199
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	3 cut(s)	143, 527, 600
MmeI	TCCRAC	6 cut(s)	113, 126, 628, 679, 751, 830
MnlI	CCTC	6 cut(s)	79, 100, 124, 647, 748, 859
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	30, 117, 1168
MslI	CAYNNNNRTG	1 cut(s)	792
Msp20I	TGGCCA	1 cut(s)	5
MspR9I	CCNGG	1 cut(s)	433
Mva1269I	GAATGC	1 cut(s)	818
MvaI	CCWGG	1 cut(s)	433
MwoI	GCNNNNNNNGC	2 cut(s)	194, 481
NdeII	GATC	4 cut(s)	149, 199, 290, 830
NlaIII	CATG	6 cut(s)	145, 180, 744, 759, 837, 1165
NlaIV	GGNNCC	1 cut(s)	201
NmuCI	GTSAC	2 cut(s)	689, 781
NspI	RCATGY	1 cut(s)	759
PcsI	WCGNNNNNNNCGW	2 cut(s)	49, 334
PctI	GAATGC	1 cut(s)	818
PfeI	GAWTC	2 cut(s)	98, 964
PkrI	GCNGC	1 cut(s)	444
Ple19I	CGATCG	1 cut(s)	152
PleI	GAGTC	3 cut(s)	142, 527, 600
PpsI	GAGTC	3 cut(s)	142, 527, 600
Ppu21I	YACGTR	2 cut(s)	694, 1006
PshBI	ATTAAT	1 cut(s)	30
Psp6I	CCWGG	1 cut(s)	431
PspGI	CCWGG	1 cut(s)	431
PspN4I	GGNNCC	1 cut(s)	201
PspPI	GGNCC	1 cut(s)	1107
PsuI	RGATCY	1 cut(s)	199
PvuI	CGATCG	1 cut(s)	152
RsaI	GTAC	4 cut(s)	507, 620, 802, 1086
RsaNI	GTAC	4 cut(s)	506, 619, 801, 1085
RseI	CAYNNNNRTG	1 cut(s)	792
SalI	GTCGAC	1 cut(s)	136
SaqAI	TTAA	3 cut(s)	30, 117, 1168
SatI	GCNGC	1 cut(s)	443
Sau3AI	GATC	4 cut(s)	149, 199, 290, 830
Sau96I	GGNCC	1 cut(s)	1107
ScaI	AGTACT	2 cut(s)	507, 802
SchI	GAGTC	3 cut(s)	143, 527, 600
ScrFI	CCNGG	1 cut(s)	433
SinI	GGWCC	1 cut(s)	1107
SmiMI	CAYNNNNRTG	1 cut(s)	792
SmlI	CTYRAG	1 cut(s)	959
SmoI	CTYRAG	1 cut(s)	959
SsiI	CCGC	4 cut(s)	197, 442, 610, 792
SspI	AATATT	1 cut(s)	766
SspMI	CTAG	2 cut(s)	416, 687
StyD4I	CCNGG	1 cut(s)	431
StyI	CCWWGG	1 cut(s)	247
TaaI	ACNGT	2 cut(s)	166, 375
TaiI	ACGT	4 cut(s)	331, 681, 696, 1008
TaqI	TCGA	5 cut(s)	137, 148, 318, 867, 1147
TaqII	GACCGA	1 cut(s)	653
TatI	WGTACW	2 cut(s)	505, 800
TauI	GCSGC	1 cut(s)	445
TfiI	GAWTC	2 cut(s)	98, 964
Tru1I	TTAA	3 cut(s)	30, 117, 1168
Tru9I	TTAA	3 cut(s)	30, 117, 1168
TscAI	CASTG	1 cut(s)	378
TseFI	GTSAC	2 cut(s)	689, 781
Tsp45I	GTSAC	2 cut(s)	689, 781
TspDTI	ATGAA	5 cut(s)	24, 66, 165, 301, 458
TspGWI	ACGGA	2 cut(s)	314, 326
TspRI	CASTG	1 cut(s)	378
VpaK11BI	GGWCC	1 cut(s)	1107
VspI	ATTAAT	1 cut(s)	30
XapI	RAATTY	1 cut(s)	1121
XceI	RCATGY	1 cut(s)	759
XmiI	GTMKAC	1 cut(s)	137
XspI	CTAG	2 cut(s)	416, 687
ZrmI	AGTACT	2 cut(s)	507, 802

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.