Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002260.1

Orthogroup ID

OG0002268

Physical Location & Seq

Genomic Coordinates Reverse (-)

234149 .. 236172

Gene Structure 2024 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002260.1_g000052.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

atgctgcacaatatgtctgaagttgctttgaggatgatgtgcgcctatgccaagccacaaatttatcacaagaatagctacgttttcaggaaaggaaaggttattgatacaatgatcatcatcataaaaggcacaattatatgtagcaatgctgaggaattaagaacctcctcaacaatgattaccgaggcacgtattcgtcagaaagatgattgttatggagaaaaacttctggattgggaaccaacagatgaatgccctactctaatctccacgcaagatgtccaatgccaaacaaaagtagaagcccttgttgtcacgctcgattcagaaatgaaaaaggtcgtagactactggagaacgagacagtgggatcagaatttcactcctcgattgaagttgacggcttccgaagtcgaaattgagaggatactaaaccagatgtattaccagtcgggaactacagagaagattgaggatgaggagttaagacaggagaggaatatcatgttcaaagagaaagctatacttgagtgggtgtcaagaaatggtctccctgagaacctgaagacagaaatcatgacgaacatgaaagtaggtaacgaagtgggaatcaacatagaagctgatgtggatgtgaagtggatactctctactgatcttccggaacatatcggtgaccgacttgagtttatgcttattattatagaaggcatattcgtatggaccaacaggcatggtgatgctgcaacaagttcgtcaccactgaccaccaggggtattgtgaaaggtgatttctgtggagaagacatattaagttgggtatcacccaacaactccttttctgctcctactcctgctccgatctggagcagagatattaagtgtcaaaaaaaagtggaagcatttgctctcacggccgagaacttgaggcaggtagtctctgaaaataaaatcaagtgggatcagagtttcaacaattgtgccggtgcgtccacttctggtactactgagcatagagcactggaacagattatccaggttcaaggtgacatgcttcgtgagcagctgctggttcttgttcgagagagcatgctccaatttcgtgaagatatggctactcaggcacggagactagatgacatgacagagtttttagcaaaatcggggtatccaggaacacctcctcctgcacgctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

399

Amino Acids

45.67

Weight (kDa)

5.22

Isoelectric Point (pI)

42.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002268)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g19150 FvH4_4g19150 FvH4_4g19150 FvH4_4g19150 FvH4_4g19150 FvH4_4g19150 FvH4_4g19150
prunus_persica	Prupe.4G109500_v2.0.a1 Prupe.4G109500_v2.0.a1 Prupe.4G109500_v2.0.a1 Prupe.4G109600_v2.0.a1 Prupe.4G109900_v2.0.a1 Prupe.4G263700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0424091 RchiOBHm_Chr5g0019831 RchiOBHm_Chr5g0020211 RchiOBHm_Chr5g0020221
rosa_laevigata	RLG00000007504
rosa_multiflora	Rmu_co8478429.1_g000001 Rmu_sc0002260.1_g000052 Rmu_sc0002260.1_g000058 Rmu_sc0002260.1_g000060
rosa_roxburghii	Rroxscaffold_5G00366100
rosa_rugosa	Rorug04G0192900 Rorug04G0193000 Rorug04G0193100 Rorug04G0193100 Rorug04G0193100 Rorug07G0254600
rosa_samantha	Rh4AG251200 Rh4BG256200 Rh4BG256300 Rh4CG266700 Rh4DG250800 Rh4DG250900 Rh5AG148300 Rh5AG366200 Rh5AG366300 Rh5CG159200
rosa_wichuraiana	Rw4G021640 Rw5G013110 Rw5G013120 Rw5G034340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	925
AccI	GTMKAC	1 cut(s)	348
AccIII	TCCGGA	1 cut(s)	664
AclWI	GGATC	2 cut(s)	381, 972
AcoI	YGGCCR	1 cut(s)	918
AcsI	RAATTY	2 cut(s)	60, 379
AcuI	CTGAAG	2 cut(s)	39, 587
AfaI	GTAC	1 cut(s)	1006
AgsI	TTSAA	4 cut(s)	397, 514, 976, 1046
AjnI	CCWGG	3 cut(s)	773, 1038, 1174
AloI	GAACNNNNNNTCC	3 cut(s)	1020, 1052, 1171
AluBI	AGCT	4 cut(s)	78, 524, 626, 1069
AluI	AGCT	4 cut(s)	78, 524, 626, 1069
Alw21I	GWGCWC	1 cut(s)	1024
Alw26I	GTCTC	4 cut(s)	358, 557, 946, 1126
AlwI	GGATC	2 cut(s)	381, 972
AlwNI	CAGNNNCTG	1 cut(s)	1072
Aor13HI	TCCGGA	1 cut(s)	664
AoxI	GGCC	1 cut(s)	918
ApeKI	GCWGC	4 cut(s)	4, 746, 1066, 1069
ApoI	RAATTY	2 cut(s)	60, 379
Asp700I	GAANNNNTTC	1 cut(s)	228
AspLEI	GCGC	1 cut(s)	44
AspS9I	GGNCC	1 cut(s)	726
AsuHPI	GGTGA	6 cut(s)	689, 752, 753, 803, 819, 1061
AvaII	GGWCC	1 cut(s)	726
BbsI	GAAGAC	2 cut(s)	575, 813
Bbv12I	GWGCWC	1 cut(s)	1024
BbvCI	CCTCAGC	1 cut(s)	153
BbvI	GCAGC	3 cut(s)	733, 1056, 1078
BceAI	ACGGC	2 cut(s)	420, 933
BcgI	CGANNNNNNTGC	2 cut(s)	738, 772
BciT130I	CCWGG	3 cut(s)	775, 1040, 1176
BciVI	GTATCC	3 cut(s)	423, 639, 1182
BclI	TGATCA	1 cut(s)	114
BcoDI	GTCTC	4 cut(s)	358, 557, 946, 1126
BfaI	CTAG	1 cut(s)	1136
BfmI	CTRYAG	1 cut(s)	462
BfuAI	ACCTGC	1 cut(s)	925
BfuI	GTATCC	3 cut(s)	423, 639, 1182
BisI	GCNGC	4 cut(s)	5, 747, 1067, 1070
BlsI	GCNGC	4 cut(s)	6, 748, 1068, 1071
Bme1390I	CCNGG	3 cut(s)	775, 1040, 1176
Bme18I	GGWCC	1 cut(s)	726
BmgT120I	GGNCC	1 cut(s)	726
BmiI	GGNNCC	1 cut(s)	243
BmrFI	CCNGG	3 cut(s)	775, 1040, 1176
BmsI	GCATC	1 cut(s)	733
BpiI	GAAGAC	2 cut(s)	575, 813
BpmI	CTGGAG	2 cut(s)	376, 889
Bpu10I	CCTNAGC	1 cut(s)	153
BpuEI	CTTGAG	3 cut(s)	551, 707, 949
BsaAI	YACGTR	1 cut(s)	194
BsaBI	GATNNNNATC	1 cut(s)	119
BsaI	GGTCTC	1 cut(s)	557
BsaJI	CCNNGG	2 cut(s)	186, 774
BsaWI	WCCGGW	1 cut(s)	664
BsaXI	ACNNNNNCTCC	3 cut(s)	844, 874, 1171
Bse118I	RCCGGY	1 cut(s)	986
Bse1I	ACTGG	3 cut(s)	359, 451, 1029
Bse3DI	GCAATG	1 cut(s)	154
Bse8I	GATNNNNATC	1 cut(s)	119
BseAI	TCCGGA	1 cut(s)	664
BseBI	CCWGG	3 cut(s)	775, 1040, 1176
BseDI	CCNNGG	2 cut(s)	186, 774
BseGI	GGATG	3 cut(s)	39, 484, 640
BseJI	GATNNNNATC	1 cut(s)	119
BseMI	GCAATG	1 cut(s)	154
BseMII	CTCAG	4 cut(s)	144, 549, 1002, 1136
BseNI	ACTGG	3 cut(s)	359, 451, 1029
BseRI	GAGGAG	4 cut(s)	160, 378, 497, 1176
BseX3I	CGGCCG	1 cut(s)	918
BseXI	GCAGC	3 cut(s)	733, 1056, 1078
BsgI	GTGCAG	1 cut(s)	1176
Bsh1285I	CGRYCG	1 cut(s)	921
BshFI	GGCC	1 cut(s)	920
BsiEI	CGRYCG	1 cut(s)	921
BsiHKAI	GWGCWC	1 cut(s)	1024
BsiSI	CCGG	2 cut(s)	665, 987
BsmAI	GTCTC	4 cut(s)	358, 557, 946, 1126
BsmI	GAATGC	1 cut(s)	260
BsnI	GGCC	1 cut(s)	920
Bso31I	GGTCTC	1 cut(s)	557
Bsp1286I	GDGCHC	1 cut(s)	1024
Bsp13I	TCCGGA	1 cut(s)	664
Bsp143I	GATC	5 cut(s)	114, 373, 658, 864, 964
BspANI	GGCC	1 cut(s)	920
BspCNI	CTCAG	4 cut(s)	145, 550, 1003, 1135
BspEI	TCCGGA	1 cut(s)	664
BspHI	TCATGA	1 cut(s)	579
BspLI	GGNNCC	1 cut(s)	243
BspMI	ACCTGC	1 cut(s)	925
BspPI	GGATC	2 cut(s)	381, 972
BspTNI	GGTCTC	1 cut(s)	557
BsrDI	GCAATG	1 cut(s)	154
BsrFI	RCCGGY	1 cut(s)	986
BsrI	ACTGG	3 cut(s)	359, 451, 1029
BssAI	RCCGGY	1 cut(s)	986
BssECI	CCNNGG	2 cut(s)	186, 774
BssMI	GATC	5 cut(s)	114, 373, 658, 864, 964
Bst2UI	CCWGG	3 cut(s)	775, 1040, 1176
Bst4CI	ACNGT	1 cut(s)	369
BstBAI	YACGTR	1 cut(s)	194
BstC8I	GCNNGC	2 cut(s)	1094, 1195
BstDEI	CTNAG	4 cut(s)	153, 558, 1011, 1122
BstEII	GGTNACC	1 cut(s)	677
BstF5I	GGATG	3 cut(s)	39, 484, 640
BstHHI	GCGC	1 cut(s)	44
BstKTI	GATC	5 cut(s)	117, 376, 661, 867, 967
BstMAI	GTCTC	4 cut(s)	358, 557, 946, 1126
BstMBI	GATC	5 cut(s)	114, 373, 658, 864, 964
BstMCI	CGRYCG	1 cut(s)	921
BstMWI	GCNNNNNNNGC	3 cut(s)	917, 1063, 1124
BstNI	CCWGG	3 cut(s)	775, 1040, 1176
BstNSI	RCATGY	2 cut(s)	1057, 1096
BstPI	GGTNACC	1 cut(s)	677
BstSCI	CCNGG	3 cut(s)	773, 1038, 1174
BstSFI	CTRYAG	1 cut(s)	462
BstV1I	GCAGC	3 cut(s)	733, 1056, 1078
BstV2I	GAAGAC	2 cut(s)	575, 813
BstZI	CGGCCG	1 cut(s)	918
BsuI	GTATCC	3 cut(s)	423, 639, 1182
BsuRI	GGCC	1 cut(s)	920
BtsCI	GGATG	3 cut(s)	39, 484, 640
BtsIMutI	CAGTG	3 cut(s)	374, 764, 1022
BveI	ACCTGC	1 cut(s)	925
Cac8I	GCNNGC	2 cut(s)	1094, 1195
CaiI	CAGNNNCTG	1 cut(s)	1072
CciI	TCATGA	1 cut(s)	579
CfoI	GCGC	1 cut(s)	44
Cfr10I	RCCGGY	1 cut(s)	986
Cfr13I	GGNCC	1 cut(s)	726
CseI	GACGC	1 cut(s)	981
Csp6I	GTAC	1 cut(s)	1005
CviAII	CATG	7 cut(s)	508, 580, 589, 737, 1054, 1093, 1144
CviJI	RGCY	9 cut(s)	55, 78, 308, 407, 524, 626, 920, 1069, 1118
CviKI_1	RGCY	9 cut(s)	55, 78, 308, 407, 524, 626, 920, 1069, 1118
CviQI	GTAC	1 cut(s)	1005
DdeI	CTNAG	4 cut(s)	153, 558, 1011, 1122
DpnI	GATC	5 cut(s)	116, 375, 660, 866, 966
DpnII	GATC	5 cut(s)	114, 373, 658, 864, 964
EaeI	YGGCCR	1 cut(s)	918
EagI	CGGCCG	1 cut(s)	918
EclXI	CGGCCG	1 cut(s)	918
Eco31I	GGTCTC	1 cut(s)	557
Eco47I	GGWCC	1 cut(s)	726
Eco52I	CGGCCG	1 cut(s)	918
Eco57I	CTGAAG	2 cut(s)	39, 587
Eco91I	GGTNACC	1 cut(s)	677
EcoO65I	GGTNACC	1 cut(s)	677
EcoRII	CCWGG	3 cut(s)	773, 1038, 1174
FaeI	CATG	7 cut(s)	511, 583, 592, 740, 1057, 1096, 1147
FalI	AAGNNNNNCTT	2 cut(s)	513, 545
FatI	CATG	7 cut(s)	507, 579, 588, 736, 1053, 1092, 1143
FbaI	TGATCA	1 cut(s)	114
FblI	GTMKAC	1 cut(s)	348
Fnu4HI	GCNGC	4 cut(s)	5, 747, 1067, 1070
FokI	GGATG	3 cut(s)	46, 491, 647
Fsp4HI	GCNGC	4 cut(s)	5, 747, 1067, 1070
FspBI	CTAG	1 cut(s)	1136
GlaI	GCGC	1 cut(s)	43
GluI	GCNGC	4 cut(s)	5, 747, 1067, 1070
GsuI	CTGGAG	2 cut(s)	376, 889
HaeIII	GGCC	1 cut(s)	920
HapII	CCGG	2 cut(s)	665, 987
HgaI	GACGC	1 cut(s)	981
HhaI	GCGC	1 cut(s)	44
Hin1II	CATG	7 cut(s)	511, 583, 592, 740, 1057, 1096, 1147
Hin6I	GCGC	1 cut(s)	42
HinP1I	GCGC	1 cut(s)	42
HincII	GTYRAC	1 cut(s)	402
HindII	GTYRAC	1 cut(s)	402
HinfI	GANTC	2 cut(s)	326, 612
HpaII	CCGG	2 cut(s)	665, 987
HphI	GGTGA	6 cut(s)	689, 752, 753, 803, 819, 1061
Hpy166II	GTNNAC	3 cut(s)	349, 402, 996
Hpy188I	TCNGA	8 cut(s)	19, 204, 331, 378, 412, 864, 946, 969
Hpy8I	GTNNAC	3 cut(s)	349, 402, 996
HpyAV	CCTTC	1 cut(s)	704
HpyCH4III	ACNGT	1 cut(s)	369
HpyCH4IV	ACGT	2 cut(s)	81, 193
HpyCH4V	TGCA	3 cut(s)	7, 749, 1193
HpyF10VI	GCNNNNNNNGC	3 cut(s)	917, 1063, 1124
HpyF3I	CTNAG	4 cut(s)	153, 558, 1011, 1122
HpySE526I	ACGT	2 cut(s)	81, 193
Hsp92II	CATG	7 cut(s)	511, 583, 592, 740, 1057, 1096, 1147
HspAI	GCGC	1 cut(s)	42
Kpn2I	TCCGGA	1 cut(s)	664
Ksp22I	TGATCA	1 cut(s)	114
Kzo9I	GATC	5 cut(s)	114, 373, 658, 864, 964
LmnI	GCTCC	4 cut(s)	853, 865, 870, 1101
Lsp1109I	GCAGC	3 cut(s)	733, 1056, 1078
LweI	GCATC	1 cut(s)	733
MaeI	CTAG	1 cut(s)	1136
MaeII	ACGT	2 cut(s)	81, 193
MaeIII	GTNAC	5 cut(s)	316, 599, 677, 759, 1049
MalI	GATC	5 cut(s)	116, 375, 660, 866, 966
MboI	GATC	5 cut(s)	114, 373, 658, 864, 964
MboII	GAAGA	5 cut(s)	481, 580, 653, 818, 1121
MfeI	CAATTG	1 cut(s)	979
MhlI	GDGCHC	1 cut(s)	1024
MluCI	AATT	7 cut(s)	60, 135, 158, 379, 420, 979, 1100
MroI	TCCGGA	1 cut(s)	664
MroXI	GAANNNNTTC	1 cut(s)	228
MseI	TTAA	4 cut(s)	161, 488, 815, 882
MslI	CAYNNNNRTG	2 cut(s)	675, 741
MspA1I	CMGCKG	1 cut(s)	1069
MspI	CCGG	2 cut(s)	665, 987
MspR9I	CCNGG	3 cut(s)	775, 1040, 1176
MunI	CAATTG	1 cut(s)	979
Mva1269I	GAATGC	1 cut(s)	260
MvaI	CCWGG	3 cut(s)	775, 1040, 1176
MwoI	GCNNNNNNNGC	3 cut(s)	917, 1063, 1124
NdeII	GATC	5 cut(s)	114, 373, 658, 864, 964
NlaIII	CATG	7 cut(s)	511, 583, 592, 740, 1057, 1096, 1147
NlaIV	GGNNCC	1 cut(s)	243
NmeAIII	GCCGAG	1 cut(s)	946
NmuCI	GTSAC	4 cut(s)	316, 677, 759, 1049
NspI	RCATGY	2 cut(s)	1057, 1096
PaeI	GCATGC	1 cut(s)	1096
PagI	TCATGA	1 cut(s)	579
PctI	GAATGC	1 cut(s)	260
PdmI	GAANNNNTTC	1 cut(s)	228
PfeI	GAWTC	2 cut(s)	326, 612
PfoI	TCCNGGA	1 cut(s)	1174
PkrI	GCNGC	4 cut(s)	6, 748, 1068, 1071
Ppu21I	YACGTR	1 cut(s)	194
Psp6I	CCWGG	3 cut(s)	773, 1038, 1174
PspEI	GGTNACC	1 cut(s)	677
PspGI	CCWGG	3 cut(s)	773, 1038, 1174
PspN4I	GGNNCC	1 cut(s)	243
PspPI	GGNCC	1 cut(s)	726
PstNI	CAGNNNCTG	1 cut(s)	1072
PvuII	CAGCTG	1 cut(s)	1069
RsaI	GTAC	1 cut(s)	1006
RsaNI	GTAC	1 cut(s)	1005
RseI	CAYNNNNRTG	2 cut(s)	675, 741
SaqAI	TTAA	4 cut(s)	161, 488, 815, 882
SatI	GCNGC	4 cut(s)	5, 747, 1067, 1070
Sau3AI	GATC	5 cut(s)	114, 373, 658, 864, 964
Sau96I	GGNCC	1 cut(s)	726
ScrFI	CCNGG	3 cut(s)	775, 1040, 1176
SduI	GDGCHC	1 cut(s)	1024
SfaNI	GCATC	1 cut(s)	733
SfcI	CTRYAG	1 cut(s)	462
SinI	GGWCC	1 cut(s)	726
SmiMI	CAYNNNNRTG	2 cut(s)	675, 741
SmlI	CTYRAG	3 cut(s)	530, 686, 928
SmoI	CTYRAG	3 cut(s)	530, 686, 928
SphI	GCATGC	1 cut(s)	1096
Sse9I	AATT	7 cut(s)	60, 135, 158, 379, 420, 979, 1100
SspMI	CTAG	1 cut(s)	1136
StyD4I	CCNGG	3 cut(s)	773, 1038, 1174
TaaI	ACNGT	1 cut(s)	369
TaiI	ACGT	2 cut(s)	84, 196
TaqI	TCGA	4 cut(s)	324, 391, 417, 1084
TaqII	GACCGA	1 cut(s)	696
TasI	AATT	7 cut(s)	60, 135, 158, 379, 420, 979, 1100
TfiI	GAWTC	2 cut(s)	326, 612
Tru1I	TTAA	4 cut(s)	161, 488, 815, 882
Tru9I	TTAA	4 cut(s)	161, 488, 815, 882
TscAI	CASTG	3 cut(s)	374, 771, 1029
TseFI	GTSAC	4 cut(s)	316, 677, 759, 1049
TseI	GCWGC	4 cut(s)	4, 746, 1066, 1069
Tsp45I	GTSAC	4 cut(s)	316, 677, 759, 1049
TspDTI	ATGAA	3 cut(s)	267, 350, 605
TspGWI	ACGGA	1 cut(s)	1144
TspRI	CASTG	3 cut(s)	374, 771, 1029
VpaK11BI	GGWCC	1 cut(s)	726
XapI	RAATTY	2 cut(s)	60, 379
XceI	RCATGY	2 cut(s)	1057, 1096
XmiI	GTMKAC	1 cut(s)	348
XmnI	GAANNNNTTC	1 cut(s)	228
XspI	CTAG	1 cut(s)	1136

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.