Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0002268

Physical Location & Seq

Genomic Coordinates Forward (+)

46543928 .. 46557287

Gene Structure 13360 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG250900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGTATCTTATCGGAAATGTCCAGACATATATACAGATGGAAACTCAAAAATCACTCTTGATAGAGGAGGAGATGATCAAGACAAAATATCAAGATATTGATACGTGGATGTCGGACAATGGTCTCCCTGGGGATATGAAGATGGAAATCACGGAACGCGTAAAAGAATATAACGTAGTGGAAAAACACCTCGGTGTTGATGTGGATATAGAATTTCTGCTCTCTGTTACTCCCACGGTGTTGAGAAATTCTTTCAAGGAGCATCTCTGCATAAATGCCCTAAAGAAACTACCCATGCTGCACAATATGTCTGAAGTTGCTTTGAGGATGATGTGCGCCTACGCCAAGCCACAAATTTATCACAAGAATAGCTACGTTTTCAGGAAAGGAAAGGTTATTGATACAATGATCATCATCATAAAAGGCACAATTATATGTAGCAATGCTGAGGAATTAAGAACCTCCTCAACAATGATTACCGAGGCACGTATTCGTCAGAAAGATGATTGTTATGGAGAAAAACTTCTGGATTGGGAACCAACAGATGAATGCCCTACTCTAATCTCCACGCAAGATGTCCAATGCCAAACAAAAGTAGAAGCCCTTGTTGTCACGCTCGATTCAGAAATGAAAAAGGTCGTAGACTACTGGAGAACGAGACAGTGGGATCAGAATTTCACTCCTCGATTGAAGTTGACGGCTTCCGAAGTCGAAATTGAGAGGATACTAAACCAGGTGATTAAACATAAGTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

251

Amino Acids

29.3

Weight (kDa)

5.83

Isoelectric Point (pI)

33.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002268)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g19150 FvH4_4g19150 FvH4_4g19150 FvH4_4g19150 FvH4_4g19150 FvH4_4g19150 FvH4_4g19150
prunus_persica	Prupe.4G109500_v2.0.a1 Prupe.4G109500_v2.0.a1 Prupe.4G109500_v2.0.a1 Prupe.4G109600_v2.0.a1 Prupe.4G109900_v2.0.a1 Prupe.4G263700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0424091 RchiOBHm_Chr5g0019831 RchiOBHm_Chr5g0020211 RchiOBHm_Chr5g0020221
rosa_laevigata	RLG00000007504
rosa_multiflora	Rmu_co8478429.1_g000001 Rmu_sc0002260.1_g000052 Rmu_sc0002260.1_g000058 Rmu_sc0002260.1_g000060
rosa_roxburghii	Rroxscaffold_5G00366100
rosa_rugosa	Rorug04G0192900 Rorug04G0193000 Rorug04G0193100 Rorug04G0193100 Rorug04G0193100 Rorug07G0254600
rosa_samantha	Rh4AG251200 Rh4BG256200 Rh4BG256300 Rh4CG266700 Rh4DG250800 Rh4DG250900 Rh5AG148300 Rh5AG366200 Rh5AG366300 Rh5CG159200
rosa_wichuraiana	Rw4G021640 Rw5G013110 Rw5G013120 Rw5G034340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	642
AccII	CGCG	1 cut(s)	159
AclWI	GGATC	1 cut(s)	675
AcsI	RAATTY	4 cut(s)	212, 247, 354, 673
AcuI	CTGAAG	1 cut(s)	333
AflIII	ACRYGT	1 cut(s)	157
AgsI	TTSAA	2 cut(s)	256, 691
AjnI	CCWGG	2 cut(s)	127, 732
AleI	CACNNNNGTG	1 cut(s)	192
AluBI	AGCT	1 cut(s)	372
AluI	AGCT	1 cut(s)	372
Alw26I	GTCTC	2 cut(s)	128, 652
AlwI	GGATC	1 cut(s)	675
ApeKI	GCWGC	1 cut(s)	298
ApoI	RAATTY	4 cut(s)	212, 247, 354, 673
Asp700I	GAANNNNTTC	1 cut(s)	522
AspLEI	GCGC	1 cut(s)	338
AsuHPI	GGTGA	1 cut(s)	748
BbvCI	CCTCAGC	1 cut(s)	447
BbvI	GCAGC	1 cut(s)	285
BccI	CCATC	2 cut(s)	31, 136
BceAI	ACGGC	1 cut(s)	714
BciT130I	CCWGG	2 cut(s)	129, 734
BciVI	GTATCC	1 cut(s)	717
BclI	TGATCA	2 cut(s)	75, 408
BcoDI	GTCTC	2 cut(s)	128, 652
BfuI	GTATCC	1 cut(s)	717
BisI	GCNGC	1 cut(s)	299
BlsI	GCNGC	1 cut(s)	300
Bme1390I	CCNGG	2 cut(s)	129, 734
BmiI	GGNNCC	1 cut(s)	537
BmrFI	CCNGG	2 cut(s)	129, 734
BmsI	GCATC	1 cut(s)	271
BoxI	GACNNNNGTC	1 cut(s)	120
BpmI	CTGGAG	1 cut(s)	670
Bpu10I	CCTNAGC	1 cut(s)	447
BsaAI	YACGTR	2 cut(s)	105, 488
BsaBI	GATNNNNATC	2 cut(s)	146, 413
BsaI	GGTCTC	1 cut(s)	128
BsaJI	CCNNGG	5 cut(s)	127, 128, 190, 234, 480
Bse1I	ACTGG	1 cut(s)	653
Bse3DI	GCAATG	1 cut(s)	448
Bse8I	GATNNNNATC	2 cut(s)	146, 413
BseBI	CCWGG	2 cut(s)	129, 734
BseDI	CCNNGG	5 cut(s)	127, 128, 190, 234, 480
BseGI	GGATG	2 cut(s)	114, 333
BseJI	GATNNNNATC	2 cut(s)	146, 413
BseMI	GCAATG	1 cut(s)	448
BseMII	CTCAG	1 cut(s)	438
BseNI	ACTGG	1 cut(s)	653
BseRI	GAGGAG	4 cut(s)	80, 83, 454, 672
BseXI	GCAGC	1 cut(s)	285
BsgI	GTGCAG	1 cut(s)	284
Bsh1236I	CGCG	1 cut(s)	159
BsmAI	GTCTC	2 cut(s)	128, 652
BsmI	GAATGC	1 cut(s)	554
Bso31I	GGTCTC	1 cut(s)	128
Bsp143I	GATC	3 cut(s)	75, 408, 667
BspCNI	CTCAG	1 cut(s)	439
BspFNI	CGCG	1 cut(s)	159
BspLI	GGNNCC	1 cut(s)	537
BspPI	GGATC	1 cut(s)	675
BspTNI	GGTCTC	1 cut(s)	128
BsrDI	GCAATG	1 cut(s)	448
BsrI	ACTGG	1 cut(s)	653
BssECI	CCNNGG	5 cut(s)	127, 128, 190, 234, 480
BssMI	GATC	3 cut(s)	75, 408, 667
Bst2UI	CCWGG	2 cut(s)	129, 734
Bst4CI	ACNGT	2 cut(s)	238, 663
BstBAI	YACGTR	2 cut(s)	105, 488
BstDEI	CTNAG	1 cut(s)	447
BstDSI	CCRYGG	1 cut(s)	234
BstF5I	GGATG	2 cut(s)	114, 333
BstFNI	CGCG	1 cut(s)	159
BstHHI	GCGC	1 cut(s)	338
BstKTI	GATC	3 cut(s)	78, 411, 670
BstMAI	GTCTC	2 cut(s)	128, 652
BstMBI	GATC	3 cut(s)	75, 408, 667
BstNI	CCWGG	2 cut(s)	129, 734
BstPAI	GACNNNNGTC	1 cut(s)	120
BstSCI	CCNGG	2 cut(s)	127, 732
BstUI	CGCG	1 cut(s)	159
BstV1I	GCAGC	1 cut(s)	285
BsuI	GTATCC	1 cut(s)	717
BtgI	CCRYGG	1 cut(s)	234
BtsCI	GGATG	2 cut(s)	114, 333
BtsIMutI	CAGTG	1 cut(s)	668
CfoI	GCGC	1 cut(s)	338
CsiI	ACCWGGT	1 cut(s)	732
CviAII	CATG	1 cut(s)	295
CviJI	RGCY	4 cut(s)	349, 372, 602, 701
CviKI_1	RGCY	4 cut(s)	349, 372, 602, 701
DdeI	CTNAG	1 cut(s)	447
DpnI	GATC	3 cut(s)	77, 410, 669
DpnII	GATC	3 cut(s)	75, 408, 667
Eco31I	GGTCTC	1 cut(s)	128
Eco57I	CTGAAG	1 cut(s)	333
EcoRII	CCWGG	2 cut(s)	127, 732
FaeI	CATG	1 cut(s)	298
FatI	CATG	1 cut(s)	294
FbaI	TGATCA	2 cut(s)	75, 408
FblI	GTMKAC	1 cut(s)	642
Fnu4HI	GCNGC	1 cut(s)	299
FokI	GGATG	2 cut(s)	121, 340
Fsp4HI	GCNGC	1 cut(s)	299
GlaI	GCGC	1 cut(s)	337
GluI	GCNGC	1 cut(s)	299
GsuI	CTGGAG	1 cut(s)	670
HhaI	GCGC	1 cut(s)	338
Hin1II	CATG	1 cut(s)	298
Hin6I	GCGC	1 cut(s)	336
HinP1I	GCGC	1 cut(s)	336
HincII	GTYRAC	1 cut(s)	696
HindII	GTYRAC	1 cut(s)	696
HinfI	GANTC	1 cut(s)	620
HphI	GGTGA	1 cut(s)	748
Hpy166II	GTNNAC	2 cut(s)	643, 696
Hpy188I	TCNGA	7 cut(s)	14, 115, 313, 498, 625, 672, 706
Hpy188III	TCNNGA	6 cut(s)	22, 58, 79, 92, 382, 527
Hpy8I	GTNNAC	2 cut(s)	643, 696
HpyCH4III	ACNGT	2 cut(s)	238, 663
HpyCH4IV	ACGT	4 cut(s)	104, 174, 375, 487
HpyCH4V	TGCA	2 cut(s)	270, 301
HpyF3I	CTNAG	1 cut(s)	447
HpySE526I	ACGT	4 cut(s)	104, 174, 375, 487
Hsp92II	CATG	1 cut(s)	298
HspAI	GCGC	1 cut(s)	336
Ksp22I	TGATCA	2 cut(s)	75, 408
Kzo9I	GATC	3 cut(s)	75, 408, 667
LmnI	GCTCC	1 cut(s)	259
LpnPI	CCDG	8 cut(s)	35, 114, 141, 367, 512, 634, 719, 746
Lsp1109I	GCAGC	1 cut(s)	285
LweI	GCATC	1 cut(s)	271
MabI	ACCWGGT	1 cut(s)	732
MaeII	ACGT	4 cut(s)	104, 174, 375, 487
MaeIII	GTNAC	2 cut(s)	226, 610
MalI	GATC	3 cut(s)	77, 410, 669
MboI	GATC	3 cut(s)	75, 408, 667
MboII	GAAGA	1 cut(s)	151
MluCI	AATT	7 cut(s)	212, 247, 354, 429, 452, 673, 714
MluI	ACGCGT	1 cut(s)	157
MmeI	TCCRAC	1 cut(s)	93
MroXI	GAANNNNTTC	1 cut(s)	522
MseI	TTAA	2 cut(s)	455, 741
MslI	CAYNNNNRTG	1 cut(s)	192
MspR9I	CCNGG	2 cut(s)	129, 734
Mva1269I	GAATGC	1 cut(s)	554
MvaI	CCWGG	2 cut(s)	129, 734
MvnI	CGCG	1 cut(s)	159
NdeII	GATC	3 cut(s)	75, 408, 667
NlaIII	CATG	1 cut(s)	298
NlaIV	GGNNCC	1 cut(s)	537
NmuCI	GTSAC	1 cut(s)	610
OliI	CACNNNNGTG	1 cut(s)	192
PasI	CCCWGGG	1 cut(s)	128
PctI	GAATGC	1 cut(s)	554
PdmI	GAANNNNTTC	1 cut(s)	522
PfeI	GAWTC	1 cut(s)	620
PkrI	GCNGC	1 cut(s)	300
Ppu21I	YACGTR	2 cut(s)	105, 488
PshAI	GACNNNNGTC	1 cut(s)	120
Psp6I	CCWGG	2 cut(s)	127, 732
PspGI	CCWGG	2 cut(s)	127, 732
PspN4I	GGNNCC	1 cut(s)	537
RseI	CAYNNNNRTG	1 cut(s)	192
SaqAI	TTAA	2 cut(s)	455, 741
SatI	GCNGC	1 cut(s)	299
Sau3AI	GATC	3 cut(s)	75, 408, 667
ScrFI	CCNGG	2 cut(s)	129, 734
SexAI	ACCWGGT	1 cut(s)	732
SfaNI	GCATC	1 cut(s)	271
SmiMI	CAYNNNNRTG	1 cut(s)	192
Sse9I	AATT	7 cut(s)	212, 247, 354, 429, 452, 673, 714
StyD4I	CCNGG	2 cut(s)	127, 732
TaaI	ACNGT	2 cut(s)	238, 663
TaiI	ACGT	4 cut(s)	107, 177, 378, 490
TaqI	TCGA	3 cut(s)	618, 685, 711
TasI	AATT	7 cut(s)	212, 247, 354, 429, 452, 673, 714
TfiI	GAWTC	1 cut(s)	620
Tru1I	TTAA	2 cut(s)	455, 741
Tru9I	TTAA	2 cut(s)	455, 741
TscAI	CASTG	1 cut(s)	668
TseFI	GTSAC	1 cut(s)	610
TseI	GCWGC	1 cut(s)	298
Tsp45I	GTSAC	1 cut(s)	610
TspDTI	ATGAA	3 cut(s)	152, 561, 644
TspGWI	ACGGA	1 cut(s)	167
TspRI	CASTG	1 cut(s)	668
XapI	RAATTY	4 cut(s)	212, 247, 354, 673
XmiI	GTMKAC	1 cut(s)	642
XmnI	GAANNNNTTC	1 cut(s)	522

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.