Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002268

Physical Location & Seq

Genomic Coordinates Reverse (-)

14475235 .. 14478375

Gene Structure 3141 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ30032

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1224 bp

ATGGGCTTGAGAGGCGGGGGAGACACCGATCTACACCCTACCCTTCGTGGTAGTTCCCACTTCCCTCACCCCTTCCATCATATCCAATCTTCTTTCTTTTTCACCATTATTCCAACCTTCCCTCTGTTTCTCCCCAATTTCCAATCCCTCTATTCTTCCTTCAGAAGCTTGTACCTCTTCCCAGTCATCAACGCCATCTTAAGCGATTTCTCGCTATCTCAACAGAGTCAGGCCTTCGCTTGCGATGCTGGCTCTTTCGCTCCTTACTTTCTTTTTTCTTTTTCTTTGGTTCCCTTGTTGTCAGGCAACTTGGCTGTGCTAGTGGCGCTCTTCTTTGGCTATAGAGTTTGGTTCGCGGGGATCTCCTGTGTCTGTGGATGGGATCTGTTCTGGTGTTCTTTCCAGGTGATTGCAGATTCGGCGGCCCCCGTTCGCGGTGGTCTGCATTGTGTCGATCTCGATACAATTGCGTCGGCCTCTCCCCTCCCCCCTGGATTGGTTTTCTTTGGGCTTTGTTGTGCATATATGCAATTTTCAAAATCAAAAGAGATGGACGAGGAGGAGTTAACAAGAAGGATGAAGGAGAAAGAGGATGCTATACGCCTGTATTTGACACCAAGAAATGGTCTTCCTGAAGATATCACGAAACAAATCATGGCAAACATAAAACATGACATATTGAAAAAGAAACTTGATACAGTTGTAGATATGGACCTTTTGCTCTCACTTGTTCCCTGGAATATTGAAATCTCCATCAAGCAGCACGTGGGCATGAATGCGGTCAAAAATGTACGAGTGCTTCAAGGTATGGATGTAAGGGTGTTGGAAAAGATCTGCGAGTATCTGAAGCCAGTGACCTACCCAGATGGCCACAAATTCCAAACAAAAGATGCAATTGATTCGATGCTTTTCATCACAGAAGGCGAAATTATATCTACGATTTTACCGTGTCAAGAGAAGCTTGATTGTTTCGGTGAACAACTTTTGTGGTGGGTATCACCGAGTATCTCCTGTACTAACCTTGATCATCCTAAGCCGACCCAAAATGTCCAGTGCCATGGAAAAGTAGAAGCATTTGCTCTCCTGGCCAAGGATTTGAAAAGTGTAGTCACTGAATTCAGACGTCAATGGAATTGGGGTTTATACAGATGTGACACTGGTTCTCCTGATTTGCCACGTCCCCGCGACATGACTAATGAGGTACTAAAAGAATTTACTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

407

Amino Acids

46.02

Weight (kDa)

6.0

Isoelectric Point (pI)

44.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002268)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g19150 FvH4_4g19150 FvH4_4g19150 FvH4_4g19150 FvH4_4g19150 FvH4_4g19150 FvH4_4g19150
prunus_persica	Prupe.4G109500_v2.0.a1 Prupe.4G109500_v2.0.a1 Prupe.4G109500_v2.0.a1 Prupe.4G109600_v2.0.a1 Prupe.4G109900_v2.0.a1 Prupe.4G263700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0424091 RchiOBHm_Chr5g0019831 RchiOBHm_Chr5g0020211 RchiOBHm_Chr5g0020221
rosa_laevigata	RLG00000007504
rosa_multiflora	Rmu_co8478429.1_g000001 Rmu_sc0002260.1_g000052 Rmu_sc0002260.1_g000058 Rmu_sc0002260.1_g000060
rosa_roxburghii	Rroxscaffold_5G00366100
rosa_rugosa	Rorug04G0192900 Rorug04G0193000 Rorug04G0193100 Rorug04G0193100 Rorug04G0193100 Rorug07G0254600
rosa_samantha	Rh4AG251200 Rh4BG256200 Rh4BG256300 Rh4CG266700 Rh4DG250800 Rh4DG250900 Rh5AG148300 Rh5AG366200 Rh5AG366300 Rh5CG159200
rosa_wichuraiana	Rw4G021640 Rw5G013110 Rw5G013120 Rw5G034340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1126
AccB7I	CCANNNNNTGG	1 cut(s)	623
AccII	CGCG	3 cut(s)	356, 435, 1185
AciI	CCGC	6 cut(s)	15, 356, 422, 435, 779, 1183
AclWI	GGATC	2 cut(s)	368, 390
AcoI	YGGCCR	2 cut(s)	868, 1086
AcsI	RAATTY	3 cut(s)	875, 1115, 1211
AcuI	CTGAAG	3 cut(s)	145, 654, 866
AcvI	CACGTG	1 cut(s)	766
AcyI	GRCGYC	1 cut(s)	1123
AfaI	GTAC	4 cut(s)	173, 792, 1015, 1203
AfiI	CCNNNNNNNGG	4 cut(s)	434, 496, 623, 1090
AflII	CTTAAG	1 cut(s)	199
AgsI	TTSAA	5 cut(s)	537, 682, 746, 803, 1099
AjiI	CACGTC	1 cut(s)	1178
AjnI	CCWGG	4 cut(s)	402, 490, 734, 1083
AluBI	AGCT	2 cut(s)	168, 961
AluI	AGCT	2 cut(s)	168, 961
Alw26I	GTCTC	1 cut(s)	15
AlwI	GGATC	2 cut(s)	368, 390
AoxI	GGCC	5 cut(s)	231, 423, 474, 868, 1086
ApeKI	GCWGC	1 cut(s)	760
ApoI	RAATTY	3 cut(s)	875, 1115, 1211
AspLEI	GCGC	1 cut(s)	328
AspS9I	GGNCC	2 cut(s)	424, 712
AsuHPI	GGTGA	5 cut(s)	59, 94, 418, 986, 990
AvaII	GGWCC	1 cut(s)	712
BaeI	ACNNNNGTAYC	2 cut(s)	687, 720
BalI	TGGCCA	2 cut(s)	870, 1088
BarI	GAAGNNNNNNTAC	2 cut(s)	783, 815
BbrPI	CACGTG	1 cut(s)	766
BbsI	GAAGAC	1 cut(s)	620
BbvI	GCAGC	1 cut(s)	772
BccI	CCATC	6 cut(s)	84, 203, 372, 544, 761, 860
BcgI	CGANNNNNNTGC	4 cut(s)	449, 483, 882, 916
BciT130I	CCWGG	4 cut(s)	404, 492, 736, 1085
BclI	TGATCA	1 cut(s)	1024
BcoDI	GTCTC	1 cut(s)	15
BfaI	CTAG	1 cut(s)	320
BfmI	CTRYAG	1 cut(s)	340
BfoI	RGCGCY	1 cut(s)	329
BfrI	CTTAAG	1 cut(s)	199
BglII	AGATCT	1 cut(s)	831
BisI	GCNGC	2 cut(s)	423, 761
BlsI	GCNGC	2 cut(s)	424, 762
Bme1390I	CCNGG	4 cut(s)	404, 492, 736, 1085
Bme18I	GGWCC	1 cut(s)	712
BmgBI	CACGTC	1 cut(s)	1178
BmgT120I	GGNCC	2 cut(s)	424, 712
BmiI	GGNNCC	2 cut(s)	291, 426
BmrFI	CCNGG	4 cut(s)	404, 492, 736, 1085
BmrI	ACTGGG	1 cut(s)	176
BmsI	GCATC	4 cut(s)	235, 583, 880, 894
BmuI	ACTGGG	1 cut(s)	176
BpiI	GAAGAC	1 cut(s)	620
Bpu10I	CCTNAGC	1 cut(s)	1032
BpuEI	CTTGAG	1 cut(s)	28
BsaAI	YACGTR	1 cut(s)	766
BsaHI	GRCGYC	1 cut(s)	1123
BsaJI	CCNNGG	4 cut(s)	490, 734, 1057, 1089
BsaXI	ACNNNNNCTCC	2 cut(s)	1147, 1177
Bsc4I	CCNNNNNNNGG	4 cut(s)	434, 496, 623, 1090
Bse1I	ACTGG	4 cut(s)	182, 851, 1051, 1162
BseBI	CCWGG	4 cut(s)	404, 492, 736, 1085
BseDI	CCNNGG	4 cut(s)	490, 734, 1057, 1089
BseGI	GGATG	5 cut(s)	383, 582, 598, 817, 1027
BseLI	CCNNNNNNNGG	4 cut(s)	434, 496, 623, 1090
BseNI	ACTGG	4 cut(s)	182, 851, 1051, 1162
BseRI	GAGGAG	2 cut(s)	572, 575
BseXI	GCAGC	1 cut(s)	772
Bsh1236I	CGCG	3 cut(s)	356, 435, 1185
BshFI	GGCC	5 cut(s)	233, 425, 476, 870, 1088
BslFI	GGGAC	1 cut(s)	1164
BslI	CCNNNNNNNGG	4 cut(s)	434, 496, 623, 1090
BsmAI	GTCTC	1 cut(s)	15
BsmFI	GGGAC	1 cut(s)	1164
BsmI	GAATGC	1 cut(s)	781
BsnI	GGCC	5 cut(s)	233, 425, 476, 870, 1088
Bsp143I	GATC	6 cut(s)	28, 360, 382, 454, 831, 1024
Bsp19I	CCATGG	1 cut(s)	1057
BspACI	CCGC	6 cut(s)	15, 356, 422, 435, 779, 1183
BspANI	GGCC	5 cut(s)	233, 425, 476, 870, 1088
BspFNI	CGCG	3 cut(s)	356, 435, 1185
BspLI	GGNNCC	2 cut(s)	291, 426
BspPI	GGATC	2 cut(s)	368, 390
BspQI	GCTCTTC	1 cut(s)	335
BspTI	CTTAAG	1 cut(s)	199
BsrI	ACTGG	4 cut(s)	182, 851, 1051, 1162
BssECI	CCNNGG	4 cut(s)	490, 734, 1057, 1089
BssMI	GATC	6 cut(s)	28, 360, 382, 454, 831, 1024
BssNI	GRCGYC	1 cut(s)	1123
BssT1I	CCWWGG	2 cut(s)	1057, 1089
Bst2UI	CCWGG	4 cut(s)	404, 492, 736, 1085
Bst4CI	ACNGT	2 cut(s)	700, 948
Bst6I	CTCTTC	2 cut(s)	182, 335
BstACI	GRCGYC	1 cut(s)	1123
BstAFI	CTTAAG	1 cut(s)	199
BstBAI	YACGTR	1 cut(s)	766
BstC8I	GCNNGC	2 cut(s)	241, 250
BstDEI	CTNAG	1 cut(s)	1032
BstDSI	CCRYGG	1 cut(s)	1057
BstENI	CCTNNNNNAGG	1 cut(s)	1088
BstF5I	GGATG	5 cut(s)	383, 582, 598, 817, 1027
BstFNI	CGCG	3 cut(s)	356, 435, 1185
BstH2I	RGCGCY	1 cut(s)	329
BstHHI	GCGC	1 cut(s)	328
BstKTI	GATC	6 cut(s)	31, 363, 385, 457, 834, 1027
BstMAI	GTCTC	1 cut(s)	15
BstMBI	GATC	6 cut(s)	28, 360, 382, 454, 831, 1024
BstMWI	GCNNNNNNNGC	6 cut(s)	12, 245, 249, 325, 419, 1085
BstNI	CCWGG	4 cut(s)	404, 492, 736, 1085
BstSCI	CCNGG	4 cut(s)	402, 490, 734, 1083
BstSFI	CTRYAG	1 cut(s)	340
BstUI	CGCG	3 cut(s)	356, 435, 1185
BstV1I	GCAGC	1 cut(s)	772
BstV2I	GAAGAC	1 cut(s)	620
BstX2I	RGATCY	3 cut(s)	360, 382, 831
BstXI	CCANNNNNNTGG	1 cut(s)	1058
BstYI	RGATCY	3 cut(s)	360, 382, 831
BsuRI	GGCC	5 cut(s)	233, 425, 476, 870, 1088
BtgI	CCRYGG	1 cut(s)	1057
BtgZI	GCGATG	1 cut(s)	258
BtrI	CACGTC	1 cut(s)	1178
BtsCI	GGATG	5 cut(s)	383, 582, 598, 817, 1027
BtsIMutI	CAGTG	4 cut(s)	858, 1058, 1110, 1155
Cac8I	GCNNGC	2 cut(s)	241, 250
CfoI	GCGC	1 cut(s)	328
Cfr13I	GGNCC	2 cut(s)	424, 712
CseI	GACGC	1 cut(s)	459
Csp6I	GTAC	4 cut(s)	172, 791, 1014, 1202
CspCI	CAANNNNNGTGG	2 cut(s)	968, 1003
CviAII	CATG	5 cut(s)	655, 671, 772, 1058, 1189
CviQI	GTAC	4 cut(s)	172, 791, 1014, 1202
DdeI	CTNAG	1 cut(s)	1032
DpnI	GATC	6 cut(s)	30, 362, 384, 456, 833, 1026
DpnII	GATC	6 cut(s)	28, 360, 382, 454, 831, 1024
EaeI	YGGCCR	2 cut(s)	868, 1086
Eam1104I	CTCTTC	2 cut(s)	182, 335
EarI	CTCTTC	2 cut(s)	182, 335
Eco130I	CCWWGG	2 cut(s)	1057, 1089
Eco147I	AGGCCT	1 cut(s)	233
Eco32I	GATATC	1 cut(s)	640
Eco47I	GGWCC	1 cut(s)	712
Eco57I	CTGAAG	3 cut(s)	145, 654, 866
Eco72I	CACGTG	1 cut(s)	766
EcoNI	CCTNNNNNAGG	1 cut(s)	1088
EcoRI	GAATTC	1 cut(s)	1115
EcoRII	CCWGG	4 cut(s)	402, 490, 734, 1083
EcoRV	GATATC	1 cut(s)	640
EcoT14I	CCWWGG	2 cut(s)	1057, 1089
ErhI	CCWWGG	2 cut(s)	1057, 1089
FaeI	CATG	5 cut(s)	658, 674, 775, 1061, 1192
FalI	AAGNNNNNCTT	2 cut(s)	945, 977
FaqI	GGGAC	1 cut(s)	1164
FatI	CATG	5 cut(s)	654, 670, 771, 1057, 1188
FauI	CCCGC	3 cut(s)	8, 349, 1190
FbaI	TGATCA	1 cut(s)	1024
Fnu4HI	GCNGC	2 cut(s)	423, 761
FokI	GGATG	5 cut(s)	390, 589, 605, 824, 1014
Fsp4HI	GCNGC	2 cut(s)	423, 761
FspBI	CTAG	1 cut(s)	320
GlaI	GCGC	1 cut(s)	327
GluI	GCNGC	2 cut(s)	423, 761
HaeII	RGCGCY	1 cut(s)	329
HaeIII	GGCC	5 cut(s)	233, 425, 476, 870, 1088
HgaI	GACGC	1 cut(s)	459
HhaI	GCGC	1 cut(s)	328
Hin1I	GRCGYC	1 cut(s)	1123
Hin1II	CATG	5 cut(s)	658, 674, 775, 1061, 1192
Hin6I	GCGC	1 cut(s)	326
HinP1I	GCGC	1 cut(s)	326
HincII	GTYRAC	1 cut(s)	567
HindII	GTYRAC	1 cut(s)	567
HindIII	AAGCTT	2 cut(s)	166, 959
HinfI	GANTC	3 cut(s)	226, 416, 899
HpaI	GTTAAC	1 cut(s)	567
HphI	GGTGA	5 cut(s)	59, 94, 418, 986, 990
Hpy166II	GTNNAC	2 cut(s)	567, 977
Hpy188I	TCNGA	3 cut(s)	164, 846, 1121
Hpy188III	TCNNGA	5 cut(s)	458, 632, 643, 953, 1166
Hpy8I	GTNNAC	2 cut(s)	567, 977
Hpy99I	CGWCG	1 cut(s)	475
HpyAV	CCTTC	8 cut(s)	53, 82, 127, 169, 244, 567, 574, 914
HpyCH4III	ACNGT	2 cut(s)	700, 948
HpyCH4IV	ACGT	3 cut(s)	765, 1123, 1177
HpyCH4V	TGCA	5 cut(s)	413, 445, 521, 529, 893
HpyF10VI	GCNNNNNNNGC	6 cut(s)	12, 245, 249, 325, 419, 1085
HpyF3I	CTNAG	1 cut(s)	1032
HpySE526I	ACGT	3 cut(s)	765, 1123, 1177
Hsp92I	GRCGYC	1 cut(s)	1123
Hsp92II	CATG	5 cut(s)	658, 674, 775, 1061, 1192
HspAI	GCGC	1 cut(s)	326
Ksp22I	TGATCA	1 cut(s)	1024
KspAI	GTTAAC	1 cut(s)	567
Kzo9I	GATC	6 cut(s)	28, 360, 382, 454, 831, 1024
LguI	GCTCTTC	1 cut(s)	335
LmnI	GCTCC	1 cut(s)	265
Lsp1109I	GCAGC	1 cut(s)	772
LweI	GCATC	4 cut(s)	235, 583, 880, 894
MaeI	CTAG	1 cut(s)	320
MaeII	ACGT	3 cut(s)	765, 1123, 1177
MaeIII	GTNAC	3 cut(s)	853, 1108, 1151
MalI	GATC	6 cut(s)	30, 362, 384, 456, 833, 1026
MboI	GATC	6 cut(s)	28, 360, 382, 454, 831, 1024
MboII	GAAGA	6 cut(s)	81, 147, 169, 322, 620, 647
MfeI	CAATTG	2 cut(s)	465, 894
MflI	RGATCY	3 cut(s)	360, 382, 831
MlsI	TGGCCA	2 cut(s)	870, 1088
MluCI	AATT	9 cut(s)	136, 465, 530, 875, 894, 927, 1115, 1132, 1211
MluNI	TGGCCA	2 cut(s)	870, 1088
MlyI	GAGTC	1 cut(s)	235
MmeI	TCCRAC	2 cut(s)	137, 804
Mox20I	TGGCCA	2 cut(s)	870, 1088
MscI	TGGCCA	2 cut(s)	870, 1088
MseI	TTAA	2 cut(s)	200, 566
Msp20I	TGGCCA	2 cut(s)	870, 1088
MspCI	CTTAAG	1 cut(s)	199
MspR9I	CCNGG	4 cut(s)	404, 492, 736, 1085
MunI	CAATTG	2 cut(s)	465, 894
Mva1269I	GAATGC	1 cut(s)	781
MvaI	CCWGG	4 cut(s)	404, 492, 736, 1085
MvnI	CGCG	3 cut(s)	356, 435, 1185
MwoI	GCNNNNNNNGC	6 cut(s)	12, 245, 249, 325, 419, 1085
NcoI	CCATGG	1 cut(s)	1057
NdeII	GATC	6 cut(s)	28, 360, 382, 454, 831, 1024
NlaIII	CATG	5 cut(s)	658, 674, 775, 1061, 1192
NlaIV	GGNNCC	2 cut(s)	291, 426
NmuCI	GTSAC	3 cut(s)	853, 1108, 1151
PceI	AGGCCT	1 cut(s)	233
PciSI	GCTCTTC	1 cut(s)	335
PcsI	WCGNNNNNNNCGW	1 cut(s)	944
PctI	GAATGC	1 cut(s)	781
PfeI	GAWTC	2 cut(s)	416, 899
PflMI	CCANNNNNTGG	1 cut(s)	623
PkrI	GCNGC	2 cut(s)	424, 762
PleI	GAGTC	1 cut(s)	234
PmaCI	CACGTG	1 cut(s)	766
PmlI	CACGTG	1 cut(s)	766
PpsI	GAGTC	1 cut(s)	234
Ppu21I	YACGTR	1 cut(s)	766
Psp6I	CCWGG	4 cut(s)	402, 490, 734, 1083
PspCI	CACGTG	1 cut(s)	766
PspGI	CCWGG	4 cut(s)	402, 490, 734, 1083
PspN4I	GGNNCC	2 cut(s)	291, 426
PspPI	GGNCC	2 cut(s)	424, 712
PsuI	RGATCY	3 cut(s)	360, 382, 831
RsaI	GTAC	4 cut(s)	173, 792, 1015, 1203
RsaNI	GTAC	4 cut(s)	172, 791, 1014, 1202
SapI	GCTCTTC	1 cut(s)	335
SaqAI	TTAA	2 cut(s)	200, 566
SatI	GCNGC	2 cut(s)	423, 761
Sau3AI	GATC	6 cut(s)	28, 360, 382, 454, 831, 1024
Sau96I	GGNCC	2 cut(s)	424, 712
SchI	GAGTC	1 cut(s)	235
ScrFI	CCNGG	4 cut(s)	404, 492, 736, 1085
SfaNI	GCATC	4 cut(s)	235, 583, 880, 894
SfcI	CTRYAG	1 cut(s)	340
SinI	GGWCC	1 cut(s)	712
SmlI	CTYRAG	2 cut(s)	7, 199
SmoI	CTYRAG	2 cut(s)	7, 199
Sse9I	AATT	9 cut(s)	136, 465, 530, 875, 894, 927, 1115, 1132, 1211
SseBI	AGGCCT	1 cut(s)	233
SsiI	CCGC	6 cut(s)	15, 356, 422, 435, 779, 1183
SspI	AATATT	1 cut(s)	742
SspMI	CTAG	1 cut(s)	320
StuI	AGGCCT	1 cut(s)	233
StyD4I	CCNGG	4 cut(s)	402, 490, 734, 1083
StyI	CCWWGG	2 cut(s)	1057, 1089
TaaI	ACNGT	2 cut(s)	700, 948
TaiI	ACGT	3 cut(s)	768, 1126, 1180
TaqI	TCGA	3 cut(s)	453, 459, 902
TasI	AATT	9 cut(s)	136, 465, 530, 875, 894, 927, 1115, 1132, 1211
TatI	WGTACW	1 cut(s)	1013
TauI	GCSGC	1 cut(s)	425
TfiI	GAWTC	2 cut(s)	416, 899
Tru1I	TTAA	2 cut(s)	200, 566
Tru9I	TTAA	2 cut(s)	200, 566
TscAI	CASTG	4 cut(s)	858, 1058, 1117, 1162
TseFI	GTSAC	3 cut(s)	853, 1108, 1151
TseI	GCWGC	1 cut(s)	760
Tsp45I	GTSAC	3 cut(s)	853, 1108, 1151
TspDTI	ATGAA	3 cut(s)	593, 788, 901
TspRI	CASTG	4 cut(s)	858, 1058, 1117, 1162
Van91I	CCANNNNNTGG	1 cut(s)	623
Vha464I	CTTAAG	1 cut(s)	199
VpaK11BI	GGWCC	1 cut(s)	712
XagI	CCTNNNNNAGG	1 cut(s)	1088
XapI	RAATTY	3 cut(s)	875, 1115, 1211
XspI	CTAG	1 cut(s)	320
ZraI	GACGTC	1 cut(s)	1124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.