Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0002268

Physical Location & Seq

Genomic Coordinates Forward (+)

42787946 .. 42789774

Gene Structure 1829 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG256300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGATTACCGAGCCACGTATTCGTCAGAAAGATGATTGTTATGGAGAAAAACTTCTGGATTGGGAACCAACAGATGAATGCCCTACTCTAACCTCCACGCAAGATGTCCAATGCCAAACAAAAGTAGAAGCCCTTGTTGTCACGCTCGATTCAGAAATGACAAAGGTCGTAGACTACTGGAGAACGAGACAGTGGGATCAGAATTTCACTCCTCGATTGAAGTTGACGGCTTCCGAAGTCGAAATTGAGAGGATACTAAACCAGAGTTTCAACAATTGTGCCGGTGCGTCCACTTCTGGTACTACTGAGCATAGAGCGCTGGAACAGATTATCCGGGTTCAAGGTGACATGCTTCGTGAGCAGCTGCTGGTTCTTGTTCGAGAGAGCATGCTCCAATTTCGTGAAGATATGGCTACTCAGGCACGGAGACTAGATGACATGACAGAGTTTTTAGCAAAATCGGGATATCCAGGAACACCTCCTCCTGCACCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

164

Amino Acids

18.86

Weight (kDa)

4.75

Isoelectric Point (pI)

38.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002268)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g19150 FvH4_4g19150 FvH4_4g19150 FvH4_4g19150 FvH4_4g19150 FvH4_4g19150 FvH4_4g19150
prunus_persica	Prupe.4G109500_v2.0.a1 Prupe.4G109500_v2.0.a1 Prupe.4G109500_v2.0.a1 Prupe.4G109600_v2.0.a1 Prupe.4G109900_v2.0.a1 Prupe.4G263700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0424091 RchiOBHm_Chr5g0019831 RchiOBHm_Chr5g0020211 RchiOBHm_Chr5g0020221
rosa_laevigata	RLG00000007504
rosa_multiflora	Rmu_co8478429.1_g000001 Rmu_sc0002260.1_g000052 Rmu_sc0002260.1_g000058 Rmu_sc0002260.1_g000060
rosa_roxburghii	Rroxscaffold_5G00366100
rosa_rugosa	Rorug04G0192900 Rorug04G0193000 Rorug04G0193100 Rorug04G0193100 Rorug04G0193100 Rorug07G0254600
rosa_samantha	Rh4AG251200 Rh4BG256200 Rh4BG256300 Rh4CG266700 Rh4DG250800 Rh4DG250900 Rh5AG148300 Rh5AG366200 Rh5AG366300 Rh5CG159200
rosa_wichuraiana	Rw4G021640 Rw5G013110 Rw5G013120 Rw5G034340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	171
AclWI	GGATC	1 cut(s)	204
AcsI	RAATTY	1 cut(s)	202
AfaI	GTAC	1 cut(s)	301
AfeI	AGCGCT	1 cut(s)	318
AgsI	TTSAA	3 cut(s)	220, 271, 341
AjnI	CCWGG	1 cut(s)	469
AloI	GAACNNNNNNTCC	3 cut(s)	315, 347, 466
AluBI	AGCT	1 cut(s)	364
AluI	AGCT	1 cut(s)	364
Alw26I	GTCTC	2 cut(s)	181, 421
AlwI	GGATC	1 cut(s)	204
AlwNI	CAGNNNCTG	1 cut(s)	367
Aor51HI	AGCGCT	1 cut(s)	318
ApeKI	GCWGC	2 cut(s)	361, 364
ApoI	RAATTY	1 cut(s)	202
Asp700I	GAANNNNTTC	1 cut(s)	51
AspLEI	GCGC	1 cut(s)	319
AsuC2I	CCSGG	1 cut(s)	335
AsuHPI	GGTGA	1 cut(s)	356
BbvI	GCAGC	2 cut(s)	351, 373
BceAI	ACGGC	1 cut(s)	243
BciT130I	CCWGG	1 cut(s)	471
BciVI	GTATCC	1 cut(s)	246
BcnI	CCSGG	1 cut(s)	335
BcoDI	GTCTC	2 cut(s)	181, 421
BfaI	CTAG	1 cut(s)	431
BfoI	RGCGCY	1 cut(s)	320
BfuI	GTATCC	1 cut(s)	246
BisI	GCNGC	2 cut(s)	362, 365
BlsI	GCNGC	2 cut(s)	363, 366
Bme1390I	CCNGG	2 cut(s)	335, 471
BmiI	GGNNCC	1 cut(s)	66
BmrFI	CCNGG	2 cut(s)	335, 471
BoxI	GACNNNNGTC	1 cut(s)	164
BpmI	CTGGAG	1 cut(s)	199
BpuMI	CCSGG	1 cut(s)	335
BsaAI	YACGTR	1 cut(s)	17
BsaXI	ACNNNNNCTCC	1 cut(s)	466
Bse118I	RCCGGY	1 cut(s)	281
Bse1I	ACTGG	1 cut(s)	182
BseBI	CCWGG	1 cut(s)	471
BseMII	CTCAG	2 cut(s)	297, 431
BseNI	ACTGG	1 cut(s)	182
BseRI	GAGGAG	2 cut(s)	201, 471
BseXI	GCAGC	2 cut(s)	351, 373
BsgI	GTGCAG	1 cut(s)	471
BsiSI	CCGG	2 cut(s)	282, 334
BsmAI	GTCTC	2 cut(s)	181, 421
BsmI	GAATGC	1 cut(s)	83
Bsp143I	GATC	1 cut(s)	196
BspCNI	CTCAG	2 cut(s)	298, 430
BspLI	GGNNCC	1 cut(s)	66
BspPI	GGATC	1 cut(s)	204
BsrFI	RCCGGY	1 cut(s)	281
BsrI	ACTGG	1 cut(s)	182
BssAI	RCCGGY	1 cut(s)	281
BssMI	GATC	1 cut(s)	196
Bst2UI	CCWGG	1 cut(s)	471
Bst4CI	ACNGT	1 cut(s)	192
BstBAI	YACGTR	1 cut(s)	17
BstC8I	GCNNGC	1 cut(s)	389
BstDEI	CTNAG	2 cut(s)	306, 417
BstH2I	RGCGCY	1 cut(s)	320
BstHHI	GCGC	1 cut(s)	319
BstKTI	GATC	1 cut(s)	199
BstMAI	GTCTC	2 cut(s)	181, 421
BstMBI	GATC	1 cut(s)	196
BstMWI	GCNNNNNNNGC	3 cut(s)	316, 358, 419
BstNI	CCWGG	1 cut(s)	471
BstNSI	RCATGY	2 cut(s)	352, 391
BstPAI	GACNNNNGTC	1 cut(s)	164
BstSCI	CCNGG	2 cut(s)	333, 469
BstV1I	GCAGC	2 cut(s)	351, 373
BsuI	GTATCC	1 cut(s)	246
BtsIMutI	CAGTG	1 cut(s)	197
Cac8I	GCNNGC	1 cut(s)	389
CaiI	CAGNNNCTG	1 cut(s)	367
CfoI	GCGC	1 cut(s)	319
Cfr10I	RCCGGY	1 cut(s)	281
CseI	GACGC	1 cut(s)	276
Csp6I	GTAC	1 cut(s)	300
CviAII	CATG	3 cut(s)	349, 388, 439
CviJI	RGCY	5 cut(s)	13, 131, 230, 364, 413
CviKI_1	RGCY	5 cut(s)	13, 131, 230, 364, 413
CviQI	GTAC	1 cut(s)	300
DdeI	CTNAG	2 cut(s)	306, 417
DpnI	GATC	1 cut(s)	198
DpnII	GATC	1 cut(s)	196
Eco32I	GATATC	1 cut(s)	467
Eco47III	AGCGCT	1 cut(s)	318
EcoRII	CCWGG	1 cut(s)	469
EcoRV	GATATC	1 cut(s)	467
FaeI	CATG	3 cut(s)	352, 391, 442
FaiI	YATR	6 cut(s)	42, 312, 350, 389, 410, 440
FatI	CATG	3 cut(s)	348, 387, 438
FblI	GTMKAC	1 cut(s)	171
Fnu4HI	GCNGC	2 cut(s)	362, 365
Fsp4HI	GCNGC	2 cut(s)	362, 365
FspBI	CTAG	1 cut(s)	431
GlaI	GCGC	1 cut(s)	318
GluI	GCNGC	2 cut(s)	362, 365
GsuI	CTGGAG	1 cut(s)	199
HaeII	RGCGCY	1 cut(s)	320
HapII	CCGG	2 cut(s)	282, 334
HgaI	GACGC	1 cut(s)	276
HhaI	GCGC	1 cut(s)	319
Hin1II	CATG	3 cut(s)	352, 391, 442
Hin6I	GCGC	1 cut(s)	317
HinP1I	GCGC	1 cut(s)	317
HincII	GTYRAC	1 cut(s)	225
HindII	GTYRAC	1 cut(s)	225
HinfI	GANTC	1 cut(s)	149
HpaII	CCGG	2 cut(s)	282, 334
HphI	GGTGA	1 cut(s)	356
Hpy166II	GTNNAC	3 cut(s)	172, 225, 291
Hpy188I	TCNGA	4 cut(s)	27, 154, 201, 235
Hpy188III	TCNNGA	5 cut(s)	56, 356, 380, 401, 462
Hpy8I	GTNNAC	3 cut(s)	172, 225, 291
HpyCH4III	ACNGT	1 cut(s)	192
HpyCH4IV	ACGT	1 cut(s)	16
HpyCH4V	TGCA	1 cut(s)	488
HpyF10VI	GCNNNNNNNGC	3 cut(s)	316, 358, 419
HpyF3I	CTNAG	2 cut(s)	306, 417
HpySE526I	ACGT	1 cut(s)	16
Hsp92II	CATG	3 cut(s)	352, 391, 442
HspAI	GCGC	1 cut(s)	317
Kzo9I	GATC	1 cut(s)	196
LmnI	GCTCC	1 cut(s)	396
Lsp1109I	GCAGC	2 cut(s)	351, 373
MaeI	CTAG	1 cut(s)	431
MaeII	ACGT	1 cut(s)	16
MaeIII	GTNAC	2 cut(s)	139, 344
MalI	GATC	1 cut(s)	198
MboI	GATC	1 cut(s)	196
MboII	GAAGA	1 cut(s)	416
MfeI	CAATTG	1 cut(s)	274
MluCI	AATT	4 cut(s)	202, 243, 274, 395
MnlI	CCTC	5 cut(s)	103, 222, 243, 489, 492
MroXI	GAANNNNTTC	1 cut(s)	51
MspA1I	CMGCKG	1 cut(s)	364
MspI	CCGG	2 cut(s)	282, 334
MspR9I	CCNGG	2 cut(s)	335, 471
MunI	CAATTG	1 cut(s)	274
Mva1269I	GAATGC	1 cut(s)	83
MvaI	CCWGG	1 cut(s)	471
MwoI	GCNNNNNNNGC	3 cut(s)	316, 358, 419
NciI	CCSGG	1 cut(s)	335
NdeII	GATC	1 cut(s)	196
NlaIII	CATG	3 cut(s)	352, 391, 442
NlaIV	GGNNCC	1 cut(s)	66
NmuCI	GTSAC	2 cut(s)	139, 344
NspI	RCATGY	2 cut(s)	352, 391
PaeI	GCATGC	1 cut(s)	391
PctI	GAATGC	1 cut(s)	83
PdmI	GAANNNNTTC	1 cut(s)	51
PfeI	GAWTC	1 cut(s)	149
PfoI	TCCNGGA	1 cut(s)	469
PkrI	GCNGC	2 cut(s)	363, 366
Ppu21I	YACGTR	1 cut(s)	17
PshAI	GACNNNNGTC	1 cut(s)	164
Psp6I	CCWGG	1 cut(s)	469
PspGI	CCWGG	1 cut(s)	469
PspN4I	GGNNCC	1 cut(s)	66
PstNI	CAGNNNCTG	1 cut(s)	367
PvuII	CAGCTG	1 cut(s)	364
RsaI	GTAC	1 cut(s)	301
RsaNI	GTAC	1 cut(s)	300
SatI	GCNGC	2 cut(s)	362, 365
Sau3AI	GATC	1 cut(s)	196
ScrFI	CCNGG	2 cut(s)	335, 471
SetI	ASST	6 cut(s)	19, 95, 168, 346, 366, 481
SphI	GCATGC	1 cut(s)	391
Sse9I	AATT	4 cut(s)	202, 243, 274, 395
SspMI	CTAG	1 cut(s)	431
StyD4I	CCNGG	2 cut(s)	333, 469
TaaI	ACNGT	1 cut(s)	192
TaiI	ACGT	1 cut(s)	19
TaqI	TCGA	4 cut(s)	147, 214, 240, 379
TasI	AATT	4 cut(s)	202, 243, 274, 395
TfiI	GAWTC	1 cut(s)	149
TscAI	CASTG	1 cut(s)	197
TseFI	GTSAC	2 cut(s)	139, 344
TseI	GCWGC	2 cut(s)	361, 364
Tsp45I	GTSAC	2 cut(s)	139, 344
TspDTI	ATGAA	1 cut(s)	90
TspGWI	ACGGA	1 cut(s)	439
TspRI	CASTG	1 cut(s)	197
XapI	RAATTY	1 cut(s)	202
XceI	RCATGY	2 cut(s)	352, 391
XmiI	GTMKAC	1 cut(s)	171
XmnI	GAANNNNTTC	1 cut(s)	51
XspI	CTAG	1 cut(s)	431

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.