Rorug04G0192900

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0002268
Physical Location & Seq
Reverse (-)
33607684 .. 33607899
216 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0192900.1

Sequence Viewer

Length: 216 bp
ATGGTTCGTTTTAAGCTGGAGATTAAGAGAATAGAAAACAACACCAATCGGCAAGTTACATTCTCAAAGCGCAGATATGGACTCATTAAAAAAGCCTATGAGCTTTCCATCCTTTGTGACATTGACATTGCTCTTATCATGTTCTCTCCTTCTGGTCGTCTTAGCCACTTTTCCGGCAAAAGAAGGTTTTTATCAATTCACATTAGATTTCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

71

Amino Acids

8.49

Weight (kDa)

10.98

Isoelectric Point (pI)

58.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 10 - 57 1.1e-26 SRF-type transcription factor (DNA-binding and dimerisation domain)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 1 cut(s) 212
AluBI AGCT 2 cut(s) 16, 103
AluI AGCT 2 cut(s) 16, 103
AspLEI GCGC 1 cut(s) 72
BccI CCATC 1 cut(s) 116
BpmI CTGGAG 1 cut(s) 38
Bse3DI GCAATG 1 cut(s) 126
BseGI GGATG 1 cut(s) 108
BseMI GCAATG 1 cut(s) 126
BsiSI CCGG 1 cut(s) 174
BsrDI GCAATG 1 cut(s) 126
BstDEI CTNAG 1 cut(s) 161
BstF5I GGATG 1 cut(s) 108
BstHHI GCGC 1 cut(s) 72
BtsCI GGATG 1 cut(s) 108
CfoI GCGC 1 cut(s) 72
CviAII CATG 1 cut(s) 139
CviJI RGCY 4 cut(s) 16, 95, 103, 165
CviKI_1 RGCY 4 cut(s) 16, 95, 103, 165
DdeI CTNAG 1 cut(s) 161
FaeI CATG 1 cut(s) 142
FaiI YATR 3 cut(s) 78, 99, 140
FatI CATG 1 cut(s) 138
FokI GGATG 1 cut(s) 95
GlaI GCGC 1 cut(s) 71
GsuI CTGGAG 1 cut(s) 38
HapII CCGG 1 cut(s) 174
HhaI GCGC 1 cut(s) 72
Hin1II CATG 1 cut(s) 142
Hin6I GCGC 1 cut(s) 70
HinP1I GCGC 1 cut(s) 70
HinfI GANTC 1 cut(s) 81
HpaII CCGG 1 cut(s) 174
HpyAV CCTTC 2 cut(s) 159, 177
HpyF3I CTNAG 1 cut(s) 161
Hsp92II CATG 1 cut(s) 142
HspAI GCGC 1 cut(s) 70
LpnPI CCDG 3 cut(s) 2, 138, 187
MaeIII GTNAC 2 cut(s) 55, 116
MluCI AATT 1 cut(s) 195
MlyI GAGTC 1 cut(s) 75
MseI TTAA 3 cut(s) 12, 24, 87
MspI CCGG 1 cut(s) 174
NlaIII CATG 1 cut(s) 142
NmuCI GTSAC 1 cut(s) 116
PleI GAGTC 1 cut(s) 75
PpsI GAGTC 1 cut(s) 75
SaqAI TTAA 3 cut(s) 12, 24, 87
SchI GAGTC 1 cut(s) 75
SetI ASST 3 cut(s) 18, 105, 188
SgeI CNNG 5 cut(s) 29, 65, 151, 165, 186
Sse9I AATT 1 cut(s) 195
TasI AATT 1 cut(s) 195
Tru1I TTAA 3 cut(s) 12, 24, 87
Tru9I TTAA 3 cut(s) 12, 24, 87
TseFI GTSAC 1 cut(s) 116
Tsp45I GTSAC 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.