Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0002268

Physical Location & Seq

Genomic Coordinates Forward (+)

19377437 .. 19388581

Gene Structure 11145 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G263700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGGACAAAAGGTTGAAGACTGCAGCTCTTTGCTTGCGAGCACTTCCTGATGCCGCTTTCGCACTGCATACTATAAATTATGTGTTTAGAATATTTGAAGAGGAAGACGACTGTTTTGAAATACTTCTCGAATGCTTTAGGAGTATATTAATTGGCGTTTTCCTTATCCTTCCCATCCCACAGTTGGCAATAGTAGTTTTCTTCTTCAAGTCAGGAGGCTCTGGACATTTCGGCCAAACAGTGACCACCGTGAACGTGTTCCTTGTTATGCATTATCTGGCCAGGGTTTTCTTAATCTACACATTCAGTAAATATCTCAAGAACAAAACCAAAACAGGGGTTCAAGCTGCATTATATTTTTTCTTCTACATTCTTTCTAGTCATGTACTTGGAGGTTTTTGGTATTTCTTTTCTATTCAACGAGAGATATCATGCTGGAACCAATCCTGTAAAAATGCTGTAAGTTGTGGACCTACTGATTATTGCAGTGGCAGTACTTCACGAAATATCACCTTCCTAAATGAGTTATGCCCGTCAAATCCACCAAATGCTACCGTATTTAATTTTGGAATATTTCTTGATGCCATTCAATATGGAACCACAAGATCAATGCATTTTCCAACCAAGTTCTTTTACTGCGTATGGTGGGGCGTCAGAAATCTAAGTAACTTTGGTACGAATTTGCAAACAAGTAGCTATGTGTGGGAAAACTGCTTCGCAATTATCGTTTCTTTGATTGGCCTGCTATTATTTTTATTTCTCCTTGGAAACCTACAGATATATATGCAACAAGCACTCATAAGATCGTTGGCTATGGAGGAGTTAAGACCGAAGGTACTTGAGAAAAAAAAGGAGATACAAATGTACATGAAAATGCATAGCATTCCAAATTATGTGGTTGATCTTGTTTTGGATAATATTGGAAAAAAGGAATGGGAAAAAAACATAGATGGTGAAGTGGATGTGAATTATATCTTTCCTGTTCTTGACGAGTATTGGAGAGGATGTATGCGCCGCCATATTTGCTTGAAGATGCTGGAAAAAGTAACTTCCTTTTTTCTTTTTCTTTTTATTTCATTTCATTATTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans

Protein Analysis

364

Amino Acids

42.25

Weight (kDa)

8.51

Isoelectric Point (pI)

52.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002268)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g19150 FvH4_4g19150 FvH4_4g19150 FvH4_4g19150 FvH4_4g19150 FvH4_4g19150 FvH4_4g19150
prunus_persica	Prupe.4G109500_v2.0.a1 Prupe.4G109500_v2.0.a1 Prupe.4G109500_v2.0.a1 Prupe.4G109600_v2.0.a1 Prupe.4G109900_v2.0.a1 Prupe.4G263700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0424091 RchiOBHm_Chr5g0019831 RchiOBHm_Chr5g0020211 RchiOBHm_Chr5g0020221
rosa_laevigata	RLG00000007504
rosa_multiflora	Rmu_co8478429.1_g000001 Rmu_sc0002260.1_g000052 Rmu_sc0002260.1_g000058 Rmu_sc0002260.1_g000060
rosa_roxburghii	Rroxscaffold_5G00366100
rosa_rugosa	Rorug04G0192900 Rorug04G0193000 Rorug04G0193100 Rorug04G0193100 Rorug04G0193100 Rorug07G0254600
rosa_samantha	Rh4AG251200 Rh4BG256200 Rh4BG256300 Rh4CG266700 Rh4DG250800 Rh4DG250900 Rh5AG148300 Rh5AG366200 Rh5AG366300 Rh5CG159200
rosa_wichuraiana	Rw4G021640 Rw5G013110 Rw5G013120 Rw5G034340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	54, 1015
AcoI	YGGCCR	2 cut(s)	232, 279
AcsI	RAATTY	1 cut(s)	679
AcyI	GRCGYC	1 cut(s)	651
AfaI	GTAC	5 cut(s)	387, 496, 676, 837, 866
AfiI	CCNNNNNNNGG	2 cut(s)	184, 336
AflIII	ACRYGT	1 cut(s)	255
AgsI	TTSAA	8 cut(s)	16, 98, 119, 208, 344, 419, 590, 1030
AjnI	CCWGG	1 cut(s)	281
AluBI	AGCT	3 cut(s)	26, 347, 696
AluI	AGCT	3 cut(s)	26, 347, 696
Alw21I	GWGCWC	1 cut(s)	43
AoxI	GGCC	3 cut(s)	232, 279, 739
ApeKI	GCWGC	2 cut(s)	23, 347
ApoI	RAATTY	1 cut(s)	679
ArsI	GACNNNNNNTTYG	2 cut(s)	98, 130
AseI	ATTAAT	1 cut(s)	149
Asp700I	GAANNNNTTC	2 cut(s)	123, 257
AspLEI	GCGC	1 cut(s)	1014
AspS9I	GGNCC	1 cut(s)	470
AsuHPI	GGTGA	2 cut(s)	502, 965
AvaII	GGWCC	1 cut(s)	470
BaeI	ACNNNNGTAYC	2 cut(s)	848, 881
BalI	TGGCCA	1 cut(s)	281
BbsI	GAAGAC	2 cut(s)	23, 111
Bbv12I	GWGCWC	1 cut(s)	43
BbvI	GCAGC	2 cut(s)	35, 334
BccI	CCATC	2 cut(s)	182, 944
BciT130I	CCWGG	1 cut(s)	283
BfaI	CTAG	1 cut(s)	378
BfmI	CTRYAG	2 cut(s)	21, 773
BisI	GCNGC	4 cut(s)	24, 54, 348, 1015
BlsI	GCNGC	4 cut(s)	25, 55, 349, 1016
BmcAI	AGTACT	1 cut(s)	496
Bme1390I	CCNGG	1 cut(s)	283
Bme18I	GGWCC	1 cut(s)	470
BmgT120I	GGNCC	1 cut(s)	470
BmiI	GGNNCC	2 cut(s)	440, 598
BmrFI	CCNGG	1 cut(s)	283
BmsI	GCATC	3 cut(s)	40, 571, 1023
BpiI	GAAGAC	2 cut(s)	23, 111
BpuEI	CTTGAG	2 cut(s)	302, 860
BsaHI	GRCGYC	1 cut(s)	651
BsaJI	CCNNGG	2 cut(s)	282, 763
BsaXI	ACNNNNNCTCC	2 cut(s)	991, 1021
Bsc4I	CCNNNNNNNGG	2 cut(s)	184, 336
BseBI	CCWGG	1 cut(s)	283
BseDI	CCNNGG	2 cut(s)	282, 763
BseGI	GGATG	3 cut(s)	174, 967, 1010
BseLI	CCNNNNNNNGG	2 cut(s)	184, 336
BseRI	GAGGAG	1 cut(s)	833
BseXI	GCAGC	2 cut(s)	35, 334
BshFI	GGCC	3 cut(s)	234, 281, 741
BsiHKAI	GWGCWC	1 cut(s)	43
BslI	CCNNNNNNNGG	2 cut(s)	184, 336
BsmI	GAATGC	2 cut(s)	137, 882
BsnI	GGCC	3 cut(s)	234, 281, 741
Bsp1286I	GDGCHC	1 cut(s)	43
Bsp1407I	TGTACA	1 cut(s)	864
Bsp143I	GATC	3 cut(s)	605, 803, 901
BspACI	CCGC	2 cut(s)	54, 1015
BspANI	GGCC	3 cut(s)	234, 281, 741
BspLI	GGNNCC	2 cut(s)	440, 598
BspMAI	CTGCAG	1 cut(s)	25
BsrGI	TGTACA	1 cut(s)	864
BssECI	CCNNGG	2 cut(s)	282, 763
BssMI	GATC	3 cut(s)	605, 803, 901
BssNI	GRCGYC	1 cut(s)	651
BssT1I	CCWWGG	1 cut(s)	763
Bst2UI	CCWGG	1 cut(s)	283
Bst4CI	ACNGT	5 cut(s)	113, 183, 241, 250, 556
Bst6I	CTCTTC	1 cut(s)	93
BstACI	GRCGYC	1 cut(s)	651
BstAUI	TGTACA	1 cut(s)	864
BstC8I	GCNNGC	3 cut(s)	35, 39, 743
BstDEI	CTNAG	1 cut(s)	662
BstF5I	GGATG	3 cut(s)	174, 967, 1010
BstHHI	GCGC	1 cut(s)	1014
BstKTI	GATC	3 cut(s)	608, 806, 904
BstMBI	GATC	3 cut(s)	605, 803, 901
BstMWI	GCNNNNNNNGC	2 cut(s)	59, 1023
BstNI	CCWGG	1 cut(s)	283
BstSCI	CCNGG	1 cut(s)	281
BstSFI	CTRYAG	2 cut(s)	21, 773
BstV1I	GCAGC	2 cut(s)	35, 334
BstV2I	GAAGAC	2 cut(s)	23, 111
BsuRI	GGCC	3 cut(s)	234, 281, 741
BtsCI	GGATG	3 cut(s)	174, 967, 1010
BtsI	GCAGTG	2 cut(s)	62, 493
BtsIMutI	CAGTG	3 cut(s)	62, 246, 493
Cac8I	GCNNGC	3 cut(s)	35, 39, 743
CfoI	GCGC	1 cut(s)	1014
Cfr13I	GGNCC	1 cut(s)	470
CseI	GACGC	1 cut(s)	640
Csp6I	GTAC	5 cut(s)	386, 495, 675, 836, 865
CspCI	CAANNNNNGTGG	2 cut(s)	876, 911
CviAII	CATG	3 cut(s)	383, 432, 868
CviJI	RGCY	8 cut(s)	26, 219, 234, 281, 347, 696, 741, 812
CviKI_1	RGCY	8 cut(s)	26, 219, 234, 281, 347, 696, 741, 812
CviQI	GTAC	5 cut(s)	386, 495, 675, 836, 865
DdeI	CTNAG	1 cut(s)	662
DpnI	GATC	3 cut(s)	607, 805, 903
DpnII	GATC	3 cut(s)	605, 803, 901
EaeI	YGGCCR	2 cut(s)	232, 279
Eam1104I	CTCTTC	1 cut(s)	93
EarI	CTCTTC	1 cut(s)	93
Eco130I	CCWWGG	1 cut(s)	763
Eco32I	GATATC	1 cut(s)	429
Eco47I	GGWCC	1 cut(s)	470
EcoRII	CCWGG	1 cut(s)	281
EcoRV	GATATC	1 cut(s)	429
EcoT14I	CCWWGG	1 cut(s)	763
EcoT22I	ATGCAT	3 cut(s)	273, 615, 879
ErhI	CCWWGG	1 cut(s)	763
FaeI	CATG	3 cut(s)	386, 435, 871
FatI	CATG	3 cut(s)	382, 431, 867
Fnu4HI	GCNGC	4 cut(s)	24, 54, 348, 1015
FokI	GGATG	3 cut(s)	161, 974, 1017
Fsp4HI	GCNGC	4 cut(s)	24, 54, 348, 1015
FspBI	CTAG	1 cut(s)	378
GlaI	GCGC	1 cut(s)	1013
GluI	GCNGC	4 cut(s)	24, 54, 348, 1015
HaeIII	GGCC	3 cut(s)	234, 281, 741
HgaI	GACGC	1 cut(s)	640
HhaI	GCGC	1 cut(s)	1014
Hin1I	GRCGYC	1 cut(s)	651
Hin1II	CATG	3 cut(s)	386, 435, 871
Hin6I	GCGC	1 cut(s)	1012
HinP1I	GCGC	1 cut(s)	1012
HphI	GGTGA	2 cut(s)	502, 965
Hpy166II	GTNNAC	2 cut(s)	253, 470
Hpy188I	TCNGA	1 cut(s)	656
Hpy188III	TCNNGA	8 cut(s)	47, 128, 213, 222, 319, 501, 578, 986
Hpy8I	GTNNAC	2 cut(s)	253, 470
HpyAV	CCTTC	3 cut(s)	179, 523, 826
HpyCH4III	ACNGT	5 cut(s)	113, 183, 241, 250, 556
HpyCH4IV	ACGT	1 cut(s)	255
HpyCH4V	TGCA	9 cut(s)	23, 67, 271, 350, 486, 613, 685, 787, 877
HpyF10VI	GCNNNNNNNGC	2 cut(s)	59, 1023
HpyF3I	CTNAG	1 cut(s)	662
HpySE526I	ACGT	1 cut(s)	255
Hsp92I	GRCGYC	1 cut(s)	651
Hsp92II	CATG	3 cut(s)	386, 435, 871
HspAI	GCGC	1 cut(s)	1012
Kzo9I	GATC	3 cut(s)	605, 803, 901
Lsp1109I	GCAGC	2 cut(s)	35, 334
LweI	GCATC	3 cut(s)	40, 571, 1023
MaeI	CTAG	1 cut(s)	378
MaeII	ACGT	1 cut(s)	255
MaeIII	GTNAC	3 cut(s)	241, 665, 1045
MalI	GATC	3 cut(s)	607, 805, 903
MboI	GATC	3 cut(s)	605, 803, 901
MboII	GAAGA	7 cut(s)	28, 110, 116, 193, 196, 355, 1042
MhlI	GDGCHC	1 cut(s)	43
MlsI	TGGCCA	1 cut(s)	281
MluCI	AATT	7 cut(s)	76, 150, 562, 679, 720, 889, 967
MluNI	TGGCCA	1 cut(s)	281
MmeI	TCCRAC	1 cut(s)	644
MnlI	CCTC	5 cut(s)	94, 209, 386, 811, 995
Mox20I	TGGCCA	1 cut(s)	281
Mph1103I	ATGCAT	3 cut(s)	273, 615, 879
MroXI	GAANNNNTTC	2 cut(s)	123, 257
MscI	TGGCCA	1 cut(s)	281
MseI	TTAA	4 cut(s)	149, 293, 561, 824
MslI	CAYNNNNRTG	1 cut(s)	872
Msp20I	TGGCCA	1 cut(s)	281
MspR9I	CCNGG	1 cut(s)	283
Mva1269I	GAATGC	2 cut(s)	137, 882
MvaI	CCWGG	1 cut(s)	283
MwoI	GCNNNNNNNGC	2 cut(s)	59, 1023
NdeII	GATC	3 cut(s)	605, 803, 901
NlaIII	CATG	3 cut(s)	386, 435, 871
NlaIV	GGNNCC	2 cut(s)	440, 598
NmuCI	GTSAC	1 cut(s)	241
NsiI	ATGCAT	3 cut(s)	273, 615, 879
PcsI	WCGNNNNNNNCGW	1 cut(s)	723
PctI	GAATGC	2 cut(s)	137, 882
PdmI	GAANNNNTTC	2 cut(s)	123, 257
PkrI	GCNGC	4 cut(s)	25, 55, 349, 1016
PshBI	ATTAAT	1 cut(s)	149
Psp6I	CCWGG	1 cut(s)	281
PspGI	CCWGG	1 cut(s)	281
PspN4I	GGNNCC	2 cut(s)	440, 598
PspPI	GGNCC	1 cut(s)	470
PstI	CTGCAG	1 cut(s)	25
RsaI	GTAC	5 cut(s)	387, 496, 676, 837, 866
RsaNI	GTAC	5 cut(s)	386, 495, 675, 836, 865
RseI	CAYNNNNRTG	1 cut(s)	872
SaqAI	TTAA	4 cut(s)	149, 293, 561, 824
SatI	GCNGC	4 cut(s)	24, 54, 348, 1015
Sau3AI	GATC	3 cut(s)	605, 803, 901
Sau96I	GGNCC	1 cut(s)	470
ScaI	AGTACT	1 cut(s)	496
ScrFI	CCNGG	1 cut(s)	283
SduI	GDGCHC	1 cut(s)	43
SfaNI	GCATC	3 cut(s)	40, 571, 1023
SfcI	CTRYAG	2 cut(s)	21, 773
SinI	GGWCC	1 cut(s)	470
SmiMI	CAYNNNNRTG	1 cut(s)	872
SmlI	CTYRAG	2 cut(s)	317, 839
SmoI	CTYRAG	2 cut(s)	317, 839
Sse9I	AATT	7 cut(s)	76, 150, 562, 679, 720, 889, 967
SsiI	CCGC	2 cut(s)	54, 1015
SspI	AATATT	3 cut(s)	93, 573, 919
SspMI	CTAG	1 cut(s)	378
StyD4I	CCNGG	1 cut(s)	281
StyI	CCWWGG	1 cut(s)	763
TaaI	ACNGT	5 cut(s)	113, 183, 241, 250, 556
TaiI	ACGT	1 cut(s)	258
TaqI	TCGA	1 cut(s)	129
TaqII	GACCGA	1 cut(s)	844
TasI	AATT	7 cut(s)	76, 150, 562, 679, 720, 889, 967
TatI	WGTACW	3 cut(s)	385, 494, 864
TauI	GCSGC	2 cut(s)	56, 1017
Tru1I	TTAA	4 cut(s)	149, 293, 561, 824
Tru9I	TTAA	4 cut(s)	149, 293, 561, 824
TscAI	CASTG	3 cut(s)	69, 246, 493
TseFI	GTSAC	1 cut(s)	241
TseI	GCWGC	2 cut(s)	23, 347
Tsp45I	GTSAC	1 cut(s)	241
TspDTI	ATGAA	3 cut(s)	884, 1065, 1070
TspRI	CASTG	3 cut(s)	69, 246, 493
VpaK11BI	GGWCC	1 cut(s)	470
VspI	ATTAAT	1 cut(s)	149
XapI	RAATTY	1 cut(s)	679
XcmI	CCANNNNNNNNNTGG	1 cut(s)	181
XmnI	GAANNNNTTC	2 cut(s)	123, 257
XspI	CTAG	1 cut(s)	378
ZrmI	AGTACT	1 cut(s)	496
Zsp2I	ATGCAT	3 cut(s)	273, 615, 879

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.