Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8478429.1

Orthogroup ID

OG0002268

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2170

Gene Structure 2170 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8478429.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1307 bp

ctacccatgctgcacaatatgtctgaagttgctttgaggatgatgtgcgcctatgccaagccacaaatttatcacaagaatagctacgttttcaggaaaggaaaggttattgatacaatgatcatcatcataaaaggcacaattatatgtagcaatgctgaggaattaagaacctcctcaacaatgattaccgaggcacgtattcgtcagaaagatgattgttatggagaaaaacttctggattgggaaccaacagatgaatgccctactctaatctccacgcaagatgtccaatgccaaacaaaagtagaagcccttgttgtcacgctcgattcagaaatgaaaaaggtcgtagactactggagaacgagacagtgggatcagaatttcactcctcgattgaagttgacggcttccgaagtcgaaattgagaggatactaaaccagatgtattaccagtcgggaactacagagaagattgaggatgaggagttaagacaggagaggaatatcatgttcaaagagaaagctatacttgagtgggtgtcaagaaatggtctccctgagaacctgaagacagaaatcatgacgaacatgaaagtaggtaacgaagtgggaatcaacatagaagctgatgtggatgtgaagtggatactctctactgatcttccggaacatatcggtatatcgataaggaagcacctttgcatgaatacactaaagagagtacccatacttgaaaatatggatgaagacgtgctaatctcgatctgcaaacatcttgagccagtggtctacaccgagaataactacctttgtcgaataggtgaccgacttgagtttatgcttattattatagaaggcatattcgtatggaccaacaggcatggtgatgctgcaacaagttcgtcaccactgaccaccaggggtattgtgaaaggtgatttctgtggagaagacatattaagttgggtatcacccaacaactccttttctgctcctactcctgctccgatctggagcagagatattaagtgtcaaaaaaaagtggaagcatttgctctcacggccgagaacttgaggcaggtagtctctgaaaataaaatcaagtgggatcagagtttcaacaattgtgccggtgcgtccacttctggtactactgagcatagagcactggaacagattatccaggttcaaggtgacatgcttcgtgagcagctgctggttcttgttcgagagagcatgctccaatttcgtgaagatatggctactcaggcacggagactagatgacatgacagagttttt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

435

Amino Acids

50.1

Weight (kDa)

5.24

Isoelectric Point (pI)

41.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002268)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g19150 FvH4_4g19150 FvH4_4g19150 FvH4_4g19150 FvH4_4g19150 FvH4_4g19150 FvH4_4g19150
prunus_persica	Prupe.4G109500_v2.0.a1 Prupe.4G109500_v2.0.a1 Prupe.4G109500_v2.0.a1 Prupe.4G109600_v2.0.a1 Prupe.4G109900_v2.0.a1 Prupe.4G263700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0424091 RchiOBHm_Chr5g0019831 RchiOBHm_Chr5g0020211 RchiOBHm_Chr5g0020221
rosa_laevigata	RLG00000007504
rosa_multiflora	Rmu_co8478429.1_g000001 Rmu_sc0002260.1_g000052 Rmu_sc0002260.1_g000058 Rmu_sc0002260.1_g000060
rosa_roxburghii	Rroxscaffold_5G00366100
rosa_rugosa	Rorug04G0192900 Rorug04G0193000 Rorug04G0193100 Rorug04G0193100 Rorug04G0193100 Rorug07G0254600
rosa_samantha	Rh4AG251200 Rh4BG256200 Rh4BG256300 Rh4CG266700 Rh4DG250800 Rh4DG250900 Rh5AG148300 Rh5AG366200 Rh5AG366300 Rh5CG159200
rosa_wichuraiana	Rw4G021640 Rw5G013110 Rw5G013120 Rw5G034340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1075
AccI	GTMKAC	2 cut(s)	354, 795
AccIII	TCCGGA	1 cut(s)	670
AclWI	GGATC	2 cut(s)	387, 1122
AcoI	YGGCCR	1 cut(s)	1068
AcsI	RAATTY	2 cut(s)	66, 385
AcuI	CTGAAG	2 cut(s)	45, 593
AfaI	GTAC	2 cut(s)	729, 1156
AgsI	TTSAA	5 cut(s)	403, 520, 740, 1126, 1196
AjiI	CACGTC	1 cut(s)	757
AjnI	CCWGG	2 cut(s)	923, 1188
AloI	GAACNNNNNNTCC	2 cut(s)	1170, 1202
AluBI	AGCT	4 cut(s)	84, 530, 632, 1219
AluI	AGCT	4 cut(s)	84, 530, 632, 1219
Alw21I	GWGCWC	1 cut(s)	1174
Alw26I	GTCTC	4 cut(s)	364, 563, 1096, 1276
AlwI	GGATC	2 cut(s)	387, 1122
AlwNI	CAGNNNCTG	1 cut(s)	1222
Aor13HI	TCCGGA	1 cut(s)	670
AoxI	GGCC	1 cut(s)	1068
ApeKI	GCWGC	4 cut(s)	10, 896, 1216, 1219
ApoI	RAATTY	2 cut(s)	66, 385
Asp700I	GAANNNNTTC	1 cut(s)	234
AspLEI	GCGC	1 cut(s)	50
AspS9I	GGNCC	1 cut(s)	876
AsuHPI	GGTGA	6 cut(s)	839, 902, 903, 953, 969, 1211
AvaII	GGWCC	1 cut(s)	876
BbsI	GAAGAC	3 cut(s)	581, 759, 963
Bbv12I	GWGCWC	1 cut(s)	1174
BbvCI	CCTCAGC	1 cut(s)	159
BbvI	GCAGC	3 cut(s)	883, 1206, 1228
BceAI	ACGGC	2 cut(s)	426, 1083
BcgI	CGANNNNNNTGC	2 cut(s)	888, 922
BciT130I	CCWGG	2 cut(s)	925, 1190
BciVI	GTATCC	2 cut(s)	429, 645
BclI	TGATCA	1 cut(s)	120
BcoDI	GTCTC	4 cut(s)	364, 563, 1096, 1276
BfaI	CTAG	1 cut(s)	1286
BfmI	CTRYAG	1 cut(s)	468
BfuAI	ACCTGC	1 cut(s)	1075
BfuI	GTATCC	2 cut(s)	429, 645
BisI	GCNGC	4 cut(s)	11, 897, 1217, 1220
BlsI	GCNGC	4 cut(s)	12, 898, 1218, 1221
Bme1390I	CCNGG	2 cut(s)	925, 1190
Bme18I	GGWCC	1 cut(s)	876
BmgBI	CACGTC	1 cut(s)	757
BmgT120I	GGNCC	1 cut(s)	876
BmiI	GGNNCC	1 cut(s)	249
BmrFI	CCNGG	2 cut(s)	925, 1190
BmsI	GCATC	1 cut(s)	883
BpiI	GAAGAC	3 cut(s)	581, 759, 963
BpmI	CTGGAG	2 cut(s)	382, 1039
Bpu10I	CCTNAGC	1 cut(s)	159
BpuEI	CTTGAG	4 cut(s)	557, 803, 857, 1099
Bsa29I	ATCGAT	1 cut(s)	689
BsaAI	YACGTR	1 cut(s)	200
BsaBI	GATNNNNATC	1 cut(s)	125
BsaI	GGTCTC	1 cut(s)	563
BsaJI	CCNNGG	2 cut(s)	192, 924
BsaWI	WCCGGW	1 cut(s)	670
BsaXI	ACNNNNNCTCC	2 cut(s)	994, 1024
Bse118I	RCCGGY	1 cut(s)	1136
Bse1I	ACTGG	4 cut(s)	365, 457, 788, 1179
Bse3DI	GCAATG	1 cut(s)	160
Bse8I	GATNNNNATC	1 cut(s)	125
BseAI	TCCGGA	1 cut(s)	670
BseBI	CCWGG	2 cut(s)	925, 1190
BseCI	ATCGAT	1 cut(s)	689
BseDI	CCNNGG	2 cut(s)	192, 924
BseGI	GGATG	4 cut(s)	45, 490, 646, 754
BseJI	GATNNNNATC	1 cut(s)	125
BseMI	GCAATG	1 cut(s)	160
BseMII	CTCAG	4 cut(s)	150, 555, 1152, 1286
BseNI	ACTGG	4 cut(s)	365, 457, 788, 1179
BseRI	GAGGAG	3 cut(s)	166, 384, 503
BseX3I	CGGCCG	1 cut(s)	1068
BseXI	GCAGC	3 cut(s)	883, 1206, 1228
Bsh1285I	CGRYCG	1 cut(s)	1071
BshFI	GGCC	1 cut(s)	1070
BshVI	ATCGAT	1 cut(s)	689
BsiEI	CGRYCG	1 cut(s)	1071
BsiHKAI	GWGCWC	1 cut(s)	1174
BsiSI	CCGG	2 cut(s)	671, 1137
BsmAI	GTCTC	4 cut(s)	364, 563, 1096, 1276
BsmI	GAATGC	1 cut(s)	266
BsnI	GGCC	1 cut(s)	1070
Bso31I	GGTCTC	1 cut(s)	563
Bsp1286I	GDGCHC	1 cut(s)	1174
Bsp13I	TCCGGA	1 cut(s)	670
Bsp143I	GATC	6 cut(s)	120, 379, 664, 768, 1014, 1114
BspANI	GGCC	1 cut(s)	1070
BspCNI	CTCAG	4 cut(s)	151, 556, 1153, 1285
BspDI	ATCGAT	1 cut(s)	689
BspEI	TCCGGA	1 cut(s)	670
BspHI	TCATGA	1 cut(s)	585
BspLI	GGNNCC	1 cut(s)	249
BspMI	ACCTGC	1 cut(s)	1075
BspPI	GGATC	2 cut(s)	387, 1122
BspTNI	GGTCTC	1 cut(s)	563
BsrDI	GCAATG	1 cut(s)	160
BsrFI	RCCGGY	1 cut(s)	1136
BsrI	ACTGG	4 cut(s)	365, 457, 788, 1179
BssAI	RCCGGY	1 cut(s)	1136
BssECI	CCNNGG	2 cut(s)	192, 924
BssMI	GATC	6 cut(s)	120, 379, 664, 768, 1014, 1114
Bst2UI	CCWGG	2 cut(s)	925, 1190
Bst4CI	ACNGT	1 cut(s)	375
BstBAI	YACGTR	1 cut(s)	200
BstC8I	GCNNGC	1 cut(s)	1244
BstDEI	CTNAG	4 cut(s)	159, 564, 1161, 1272
BstEII	GGTNACC	1 cut(s)	827
BstF5I	GGATG	4 cut(s)	45, 490, 646, 754
BstHHI	GCGC	1 cut(s)	50
BstKTI	GATC	6 cut(s)	123, 382, 667, 771, 1017, 1117
BstMAI	GTCTC	4 cut(s)	364, 563, 1096, 1276
BstMBI	GATC	6 cut(s)	120, 379, 664, 768, 1014, 1114
BstMCI	CGRYCG	1 cut(s)	1071
BstMWI	GCNNNNNNNGC	3 cut(s)	1067, 1213, 1274
BstNI	CCWGG	2 cut(s)	925, 1190
BstNSI	RCATGY	2 cut(s)	1207, 1246
BstPI	GGTNACC	1 cut(s)	827
BstSCI	CCNGG	2 cut(s)	923, 1188
BstSFI	CTRYAG	1 cut(s)	468
BstV1I	GCAGC	3 cut(s)	883, 1206, 1228
BstV2I	GAAGAC	3 cut(s)	581, 759, 963
BstZI	CGGCCG	1 cut(s)	1068
Bsu15I	ATCGAT	1 cut(s)	689
BsuI	GTATCC	2 cut(s)	429, 645
BsuRI	GGCC	1 cut(s)	1070
BsuTUI	ATCGAT	1 cut(s)	689
BtrI	CACGTC	1 cut(s)	757
BtsCI	GGATG	4 cut(s)	45, 490, 646, 754
BtsIMutI	CAGTG	4 cut(s)	380, 795, 914, 1172
BveI	ACCTGC	1 cut(s)	1075
Cac8I	GCNNGC	1 cut(s)	1244
CaiI	CAGNNNCTG	1 cut(s)	1222
CciI	TCATGA	1 cut(s)	585
CfoI	GCGC	1 cut(s)	50
Cfr10I	RCCGGY	1 cut(s)	1136
Cfr13I	GGNCC	1 cut(s)	876
ClaI	ATCGAT	1 cut(s)	689
CseI	GACGC	1 cut(s)	1131
Csp6I	GTAC	2 cut(s)	728, 1155
CviAII	CATG	9 cut(s)	7, 514, 586, 595, 709, 887, 1204, 1243, 1294
CviQI	GTAC	2 cut(s)	728, 1155
DdeI	CTNAG	4 cut(s)	159, 564, 1161, 1272
DpnI	GATC	6 cut(s)	122, 381, 666, 770, 1016, 1116
DpnII	GATC	6 cut(s)	120, 379, 664, 768, 1014, 1114
EaeI	YGGCCR	1 cut(s)	1068
EagI	CGGCCG	1 cut(s)	1068
EclXI	CGGCCG	1 cut(s)	1068
Eco31I	GGTCTC	1 cut(s)	563
Eco47I	GGWCC	1 cut(s)	876
Eco52I	CGGCCG	1 cut(s)	1068
Eco57I	CTGAAG	2 cut(s)	45, 593
Eco91I	GGTNACC	1 cut(s)	827
EcoO65I	GGTNACC	1 cut(s)	827
EcoRII	CCWGG	2 cut(s)	923, 1188
FaeI	CATG	9 cut(s)	10, 517, 589, 598, 712, 890, 1207, 1246, 1297
FalI	AAGNNNNNCTT	2 cut(s)	519, 551
FatI	CATG	9 cut(s)	6, 513, 585, 594, 708, 886, 1203, 1242, 1293
FbaI	TGATCA	1 cut(s)	120
FblI	GTMKAC	2 cut(s)	354, 795
Fnu4HI	GCNGC	4 cut(s)	11, 897, 1217, 1220
FokI	GGATG	4 cut(s)	52, 497, 653, 761
Fsp4HI	GCNGC	4 cut(s)	11, 897, 1217, 1220
FspBI	CTAG	1 cut(s)	1286
GlaI	GCGC	1 cut(s)	49
GluI	GCNGC	4 cut(s)	11, 897, 1217, 1220
GsuI	CTGGAG	2 cut(s)	382, 1039
HaeIII	GGCC	1 cut(s)	1070
HapII	CCGG	2 cut(s)	671, 1137
HgaI	GACGC	1 cut(s)	1131
HhaI	GCGC	1 cut(s)	50
Hin1II	CATG	9 cut(s)	10, 517, 589, 598, 712, 890, 1207, 1246, 1297
Hin6I	GCGC	1 cut(s)	48
HinP1I	GCGC	1 cut(s)	48
HincII	GTYRAC	1 cut(s)	408
HindII	GTYRAC	1 cut(s)	408
HinfI	GANTC	2 cut(s)	332, 618
HpaII	CCGG	2 cut(s)	671, 1137
HphI	GGTGA	6 cut(s)	839, 902, 903, 953, 969, 1211
Hpy166II	GTNNAC	4 cut(s)	355, 408, 796, 1146
Hpy188I	TCNGA	8 cut(s)	25, 210, 337, 384, 418, 1014, 1096, 1119
Hpy8I	GTNNAC	4 cut(s)	355, 408, 796, 1146
HpyAV	CCTTC	1 cut(s)	854
HpyCH4III	ACNGT	1 cut(s)	375
HpyCH4IV	ACGT	3 cut(s)	87, 199, 756
HpyCH4V	TGCA	4 cut(s)	13, 708, 774, 899
HpyF10VI	GCNNNNNNNGC	3 cut(s)	1067, 1213, 1274
HpyF3I	CTNAG	4 cut(s)	159, 564, 1161, 1272
HpySE526I	ACGT	3 cut(s)	87, 199, 756
Hsp92II	CATG	9 cut(s)	10, 517, 589, 598, 712, 890, 1207, 1246, 1297
HspAI	GCGC	1 cut(s)	48
Kpn2I	TCCGGA	1 cut(s)	670
Ksp22I	TGATCA	1 cut(s)	120
Kzo9I	GATC	6 cut(s)	120, 379, 664, 768, 1014, 1114
LmnI	GCTCC	4 cut(s)	1003, 1015, 1020, 1251
Lsp1109I	GCAGC	3 cut(s)	883, 1206, 1228
LweI	GCATC	1 cut(s)	883
MaeI	CTAG	1 cut(s)	1286
MaeII	ACGT	3 cut(s)	87, 199, 756
MaeIII	GTNAC	5 cut(s)	322, 605, 827, 909, 1199
MalI	GATC	6 cut(s)	122, 381, 666, 770, 1016, 1116
MboI	GATC	6 cut(s)	120, 379, 664, 768, 1014, 1114
MboII	GAAGA	6 cut(s)	487, 586, 659, 764, 968, 1271
MfeI	CAATTG	1 cut(s)	1129
MhlI	GDGCHC	1 cut(s)	1174
MluCI	AATT	7 cut(s)	66, 141, 164, 385, 426, 1129, 1250
MroI	TCCGGA	1 cut(s)	670
MroXI	GAANNNNTTC	1 cut(s)	234
MseI	TTAA	4 cut(s)	167, 494, 965, 1032
MslI	CAYNNNNRTG	1 cut(s)	891
MspA1I	CMGCKG	1 cut(s)	1219
MspI	CCGG	2 cut(s)	671, 1137
MspR9I	CCNGG	2 cut(s)	925, 1190
MunI	CAATTG	1 cut(s)	1129
Mva1269I	GAATGC	1 cut(s)	266
MvaI	CCWGG	2 cut(s)	925, 1190
MwoI	GCNNNNNNNGC	3 cut(s)	1067, 1213, 1274
NdeII	GATC	6 cut(s)	120, 379, 664, 768, 1014, 1114
NlaIII	CATG	9 cut(s)	10, 517, 589, 598, 712, 890, 1207, 1246, 1297
NlaIV	GGNNCC	1 cut(s)	249
NmeAIII	GCCGAG	1 cut(s)	1096
NmuCI	GTSAC	4 cut(s)	322, 827, 909, 1199
NspI	RCATGY	2 cut(s)	1207, 1246
PaeI	GCATGC	1 cut(s)	1246
PagI	TCATGA	1 cut(s)	585
PctI	GAATGC	1 cut(s)	266
PdmI	GAANNNNTTC	1 cut(s)	234
PfeI	GAWTC	2 cut(s)	332, 618
PkrI	GCNGC	4 cut(s)	12, 898, 1218, 1221
Ppu21I	YACGTR	1 cut(s)	200
Psp6I	CCWGG	2 cut(s)	923, 1188
PspEI	GGTNACC	1 cut(s)	827
PspGI	CCWGG	2 cut(s)	923, 1188
PspN4I	GGNNCC	1 cut(s)	249
PspPI	GGNCC	1 cut(s)	876
PstNI	CAGNNNCTG	1 cut(s)	1222
PvuII	CAGCTG	1 cut(s)	1219
RsaI	GTAC	2 cut(s)	729, 1156
RsaNI	GTAC	2 cut(s)	728, 1155
RseI	CAYNNNNRTG	1 cut(s)	891
SaqAI	TTAA	4 cut(s)	167, 494, 965, 1032
SatI	GCNGC	4 cut(s)	11, 897, 1217, 1220
Sau3AI	GATC	6 cut(s)	120, 379, 664, 768, 1014, 1114
Sau96I	GGNCC	1 cut(s)	876
ScrFI	CCNGG	2 cut(s)	925, 1190
SduI	GDGCHC	1 cut(s)	1174
SfaNI	GCATC	1 cut(s)	883
SfcI	CTRYAG	1 cut(s)	468
SinI	GGWCC	1 cut(s)	876
SmiMI	CAYNNNNRTG	1 cut(s)	891
SmlI	CTYRAG	4 cut(s)	536, 782, 836, 1078
SmoI	CTYRAG	4 cut(s)	536, 782, 836, 1078
SphI	GCATGC	1 cut(s)	1246
Sse9I	AATT	7 cut(s)	66, 141, 164, 385, 426, 1129, 1250
SspMI	CTAG	1 cut(s)	1286
StyD4I	CCNGG	2 cut(s)	923, 1188
TaaI	ACNGT	1 cut(s)	375
TaiI	ACGT	3 cut(s)	90, 202, 759
TaqI	TCGA	7 cut(s)	330, 397, 423, 689, 767, 820, 1234
TaqII	GACCGA	1 cut(s)	846
TasI	AATT	7 cut(s)	66, 141, 164, 385, 426, 1129, 1250
TfiI	GAWTC	2 cut(s)	332, 618
Tru1I	TTAA	4 cut(s)	167, 494, 965, 1032
Tru9I	TTAA	4 cut(s)	167, 494, 965, 1032
TscAI	CASTG	4 cut(s)	380, 795, 921, 1179
TseFI	GTSAC	4 cut(s)	322, 827, 909, 1199
TseI	GCWGC	4 cut(s)	10, 896, 1216, 1219
Tsp45I	GTSAC	4 cut(s)	322, 827, 909, 1199
TspDTI	ATGAA	5 cut(s)	273, 356, 611, 725, 765
TspGWI	ACGGA	1 cut(s)	1294
TspRI	CASTG	4 cut(s)	380, 795, 921, 1179
VpaK11BI	GGWCC	1 cut(s)	876
XapI	RAATTY	2 cut(s)	66, 385
XceI	RCATGY	2 cut(s)	1207, 1246
XmiI	GTMKAC	2 cut(s)	354, 795
XmnI	GAANNNNTTC	1 cut(s)	234
XspI	CTAG	1 cut(s)	1286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.