Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0002268

Physical Location & Seq

Genomic Coordinates Forward (+)

59163500 .. 59164483

Gene Structure 984 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G034340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGATTGACGACGTGCTTGTAAGGATGTGTTACCACCTCCAGCCAGTGATCTACAACGAACATAATGTCCTTGTTCAAGCAGGAGAACAACTCGATTTTATGCTCATCATCATAGAAGGTGTAATTATATGCACGGACATGGCCAGCAATACAGCCACAGGTTCCTCAGTGGTCACCAAATCACTTGAAAAAGGCGGTTTTTATGGCGAAGAGCTTCTGAATTGGGCATCACCTAAAGTTTTATTTTCTGGTGCTGCTCCTATTTCTACCCAACATGTCAAATGTCAAAGGAAAGTAGAAGGTTTTTCTCTCACATCTAGCAACTTGAGAGCTGTAGTCTCCGAATACAGCATTGAGTGGACTTCGAAGTTTAACGACTGTAATGTACAGCACTTGGAGAATGAATCAGAAGAGGAGTTGACGATTCTGAATCACATATGTGAACAGATACCAAACGAGATACTCTCGGGTATGCTGCACGTTGTAGGAAATGATGAACTGAGTTTCTTCTTCATTTGTGTTAACAATATAGGAGCAGTTGGGATCTACACAAATGGACCAGATGCAGTTGGGAACTATGCTGGTGGAAGCTATACAGTCGGGAACTACGCGAGTGGAGGAGATGCAGTCAGCTACCATAAGAGTGGATCAAGAGATACAGTCCGGAATTACACAAGTGGAGGAGATGCAGACAGAACCTACGCAAGTGGATCAAGAGATGCAGTTCGTAACTACGAGCGTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

248

Amino Acids

27.06

Weight (kDa)

4.8

Isoelectric Point (pI)

33.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002268)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g19150 FvH4_4g19150 FvH4_4g19150 FvH4_4g19150 FvH4_4g19150 FvH4_4g19150 FvH4_4g19150
prunus_persica	Prupe.4G109500_v2.0.a1 Prupe.4G109500_v2.0.a1 Prupe.4G109500_v2.0.a1 Prupe.4G109600_v2.0.a1 Prupe.4G109900_v2.0.a1 Prupe.4G263700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0424091 RchiOBHm_Chr5g0019831 RchiOBHm_Chr5g0020211 RchiOBHm_Chr5g0020221
rosa_laevigata	RLG00000007504
rosa_multiflora	Rmu_co8478429.1_g000001 Rmu_sc0002260.1_g000052 Rmu_sc0002260.1_g000058 Rmu_sc0002260.1_g000060
rosa_roxburghii	Rroxscaffold_5G00366100
rosa_rugosa	Rorug04G0192900 Rorug04G0193000 Rorug04G0193100 Rorug04G0193100 Rorug04G0193100 Rorug07G0254600
rosa_samantha	Rh4AG251200 Rh4BG256200 Rh4BG256300 Rh4CG266700 Rh4DG250800 Rh4DG250900 Rh5AG148300 Rh5AG366200 Rh5AG366300 Rh5CG159200
rosa_wichuraiana	Rw4G021640 Rw5G013110 Rw5G013120 Rw5G034340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	611
AccIII	TCCGGA	1 cut(s)	663
AciI	CCGC	1 cut(s)	195
AclWI	GGATC	3 cut(s)	551, 655, 718
AcoI	YGGCCR	1 cut(s)	141
AfaI	GTAC	1 cut(s)	387
AflIII	ACRYGT	1 cut(s)	274
AgsI	TTSAA	2 cut(s)	77, 188
AjiI	CACGTC	1 cut(s)	13
AleI	CACNNNNGTG	1 cut(s)	438
AloI	GAACNNNNNNTCC	2 cut(s)	51, 83
AluBI	AGCT	4 cut(s)	214, 332, 591, 633
AluI	AGCT	4 cut(s)	214, 332, 591, 633
Alw26I	GTCTC	1 cut(s)	343
AlwI	GGATC	3 cut(s)	551, 655, 718
Ama87I	CYCGRG	1 cut(s)	466
Aor13HI	TCCGGA	1 cut(s)	663
AoxI	GGCC	1 cut(s)	141
ApeKI	GCWGC	2 cut(s)	254, 475
ArsI	GACNNNNNNTTYG	2 cut(s)	51, 83
Asp700I	GAANNNNTTC	1 cut(s)	213
AspS9I	GGNCC	1 cut(s)	557
AsuHPI	GGTGA	2 cut(s)	166, 222
AsuII	TTCGAA	1 cut(s)	365
AvaI	CYCGRG	1 cut(s)	466
AvaII	GGWCC	1 cut(s)	557
BalI	TGGCCA	1 cut(s)	143
BbvI	GCAGC	2 cut(s)	241, 462
BcoDI	GTCTC	1 cut(s)	343
BfaI	CTAG	1 cut(s)	318
BfmI	CTRYAG	1 cut(s)	333
BisI	GCNGC	2 cut(s)	255, 476
BlsI	GCNGC	2 cut(s)	256, 477
Bme18I	GGWCC	1 cut(s)	557
BmeT110I	CYCGRG	1 cut(s)	466
BmgBI	CACGTC	1 cut(s)	13
BmgT120I	GGNCC	1 cut(s)	557
BmiI	GGNNCC	1 cut(s)	163
BmsI	GCATC	5 cut(s)	236, 553, 613, 676, 709
BplI	GAGNNNNNCTC	4 cut(s)	75, 107, 449, 481
BpmI	CTGGAG	1 cut(s)	23
Bpu14I	TTCGAA	1 cut(s)	365
BpuEI	CTTGAG	1 cut(s)	346
BsaWI	WCCGGW	1 cut(s)	663
BsaXI	ACNNNNNCTCC	2 cut(s)	612, 642
Bse1I	ACTGG	1 cut(s)	44
BseAI	TCCGGA	1 cut(s)	663
BseGI	GGATG	1 cut(s)	30
BseMII	CTCAG	2 cut(s)	180, 491
BseNI	ACTGG	1 cut(s)	44
BseRI	GAGGAG	3 cut(s)	428, 633, 696
BseXI	GCAGC	2 cut(s)	241, 462
BsgI	GTGCAG	1 cut(s)	461
Bsh1236I	CGCG	1 cut(s)	611
BshFI	GGCC	1 cut(s)	143
BsiHKCI	CYCGRG	1 cut(s)	466
BsiSI	CCGG	1 cut(s)	664
BsmAI	GTCTC	1 cut(s)	343
BsnI	GGCC	1 cut(s)	143
BsoBI	CYCGRG	1 cut(s)	466
Bsp119I	TTCGAA	1 cut(s)	365
Bsp13I	TCCGGA	1 cut(s)	663
Bsp1407I	TGTACA	1 cut(s)	385
Bsp143I	GATC	4 cut(s)	48, 543, 647, 710
BspACI	CCGC	1 cut(s)	195
BspANI	GGCC	1 cut(s)	143
BspCNI	CTCAG	2 cut(s)	179, 492
BspEI	TCCGGA	1 cut(s)	663
BspFNI	CGCG	1 cut(s)	611
BspLI	GGNNCC	1 cut(s)	163
BspPI	GGATC	3 cut(s)	551, 655, 718
BspQI	GCTCTTC	1 cut(s)	204
BspT104I	TTCGAA	1 cut(s)	365
BsrGI	TGTACA	1 cut(s)	385
BsrI	ACTGG	1 cut(s)	44
BssMI	GATC	4 cut(s)	48, 543, 647, 710
Bst4CI	ACNGT	3 cut(s)	380, 598, 661
Bst6I	CTCTTC	2 cut(s)	204, 405
BstAUI	TGTACA	1 cut(s)	385
BstBI	TTCGAA	1 cut(s)	365
BstC8I	GCNNGC	1 cut(s)	145
BstDEI	CTNAG	2 cut(s)	166, 500
BstEII	GGTNACC	1 cut(s)	172
BstF5I	GGATG	1 cut(s)	30
BstFNI	CGCG	1 cut(s)	611
BstKTI	GATC	4 cut(s)	51, 546, 650, 713
BstMAI	GTCTC	1 cut(s)	343
BstMBI	GATC	4 cut(s)	48, 543, 647, 710
BstNSI	RCATGY	1 cut(s)	278
BstPI	GGTNACC	1 cut(s)	172
BstSFI	CTRYAG	1 cut(s)	333
BstUI	CGCG	1 cut(s)	611
BstV1I	GCAGC	2 cut(s)	241, 462
BstX2I	RGATCY	1 cut(s)	543
BstXI	CCANNNNNNTGG	1 cut(s)	644
BstYI	RGATCY	1 cut(s)	543
BsuRI	GGCC	1 cut(s)	143
BtrI	CACGTC	1 cut(s)	13
BtsCI	GGATG	1 cut(s)	30
BtsIMutI	CAGTG	2 cut(s)	51, 174
Cac8I	GCNNGC	1 cut(s)	145
Cfr13I	GGNCC	1 cut(s)	557
Csp6I	GTAC	1 cut(s)	386
CviAII	CATG	2 cut(s)	139, 275
CviJI	RGCY	7 cut(s)	43, 143, 155, 214, 332, 591, 633
CviKI_1	RGCY	7 cut(s)	43, 143, 155, 214, 332, 591, 633
CviQI	GTAC	1 cut(s)	386
DdeI	CTNAG	2 cut(s)	166, 500
DpnI	GATC	4 cut(s)	50, 545, 649, 712
DpnII	GATC	4 cut(s)	48, 543, 647, 710
EaeI	YGGCCR	1 cut(s)	141
Eam1104I	CTCTTC	2 cut(s)	204, 405
EarI	CTCTTC	2 cut(s)	204, 405
Eco47I	GGWCC	1 cut(s)	557
Eco88I	CYCGRG	1 cut(s)	466
Eco91I	GGTNACC	1 cut(s)	172
EcoO65I	GGTNACC	1 cut(s)	172
FaeI	CATG	2 cut(s)	142, 278
FatI	CATG	2 cut(s)	138, 274
FauNDI	CATATG	1 cut(s)	437
Fnu4HI	GCNGC	2 cut(s)	255, 476
FokI	GGATG	1 cut(s)	37
Fsp4HI	GCNGC	2 cut(s)	255, 476
FspBI	CTAG	1 cut(s)	318
GluI	GCNGC	2 cut(s)	255, 476
GsuI	CTGGAG	1 cut(s)	23
HaeIII	GGCC	1 cut(s)	143
HapII	CCGG	1 cut(s)	664
Hin1II	CATG	2 cut(s)	142, 278
HincII	GTYRAC	2 cut(s)	420, 523
HindII	GTYRAC	2 cut(s)	420, 523
HinfI	GANTC	3 cut(s)	404, 424, 430
HpaI	GTTAAC	1 cut(s)	523
HpaII	CCGG	1 cut(s)	664
HphI	GGTGA	2 cut(s)	166, 222
Hpy166II	GTNNAC	4 cut(s)	360, 420, 443, 523
Hpy188I	TCNGA	4 cut(s)	219, 343, 409, 429
Hpy188III	TCNNGA	4 cut(s)	601, 651, 664, 714
Hpy8I	GTNNAC	4 cut(s)	360, 420, 443, 523
Hpy99I	CGWCG	1 cut(s)	14
HpyAV	CCTTC	2 cut(s)	110, 293
HpyCH4III	ACNGT	3 cut(s)	380, 598, 661
HpyCH4IV	ACGT	2 cut(s)	12, 480
HpyCH4V	TGCA	6 cut(s)	132, 478, 566, 626, 689, 722
HpyF3I	CTNAG	2 cut(s)	166, 500
HpySE526I	ACGT	2 cut(s)	12, 480
Hsp92II	CATG	2 cut(s)	142, 278
Kpn2I	TCCGGA	1 cut(s)	663
KspAI	GTTAAC	1 cut(s)	523
Kzo9I	GATC	4 cut(s)	48, 543, 647, 710
LguI	GCTCTTC	1 cut(s)	204
LmnI	GCTCC	2 cut(s)	262, 533
LpnPI	CCDG	9 cut(s)	53, 57, 66, 144, 157, 234, 567, 573, 677
Lsp1109I	GCAGC	2 cut(s)	241, 462
LweI	GCATC	5 cut(s)	236, 553, 613, 676, 709
MaeI	CTAG	1 cut(s)	318
MaeII	ACGT	2 cut(s)	12, 480
MaeIII	GTNAC	3 cut(s)	29, 172, 728
MalI	GATC	4 cut(s)	50, 545, 649, 712
MboI	GATC	4 cut(s)	48, 543, 647, 710
MboII	GAAGA	4 cut(s)	221, 422, 499, 502
MflI	RGATCY	1 cut(s)	543
MlsI	TGGCCA	1 cut(s)	143
MluCI	AATT	3 cut(s)	123, 220, 667
MluNI	TGGCCA	1 cut(s)	143
MnlI	CCTC	5 cut(s)	47, 175, 406, 611, 674
Mox20I	TGGCCA	1 cut(s)	143
MroI	TCCGGA	1 cut(s)	663
MroXI	GAANNNNTTC	1 cut(s)	213
MscI	TGGCCA	1 cut(s)	143
MseI	TTAA	2 cut(s)	372, 522
MslI	CAYNNNNRTG	3 cut(s)	137, 438, 642
Msp20I	TGGCCA	1 cut(s)	143
MspI	CCGG	1 cut(s)	664
MvnI	CGCG	1 cut(s)	611
NdeI	CATATG	1 cut(s)	437
NdeII	GATC	4 cut(s)	48, 543, 647, 710
NlaIII	CATG	2 cut(s)	142, 278
NlaIV	GGNNCC	1 cut(s)	163
NmuCI	GTSAC	1 cut(s)	172
NspI	RCATGY	1 cut(s)	278
NspV	TTCGAA	1 cut(s)	365
OliI	CACNNNNGTG	1 cut(s)	438
PciI	ACATGT	1 cut(s)	274
PciSI	GCTCTTC	1 cut(s)	204
PdmI	GAANNNNTTC	1 cut(s)	213
PfeI	GAWTC	3 cut(s)	404, 424, 430
PkrI	GCNGC	2 cut(s)	256, 477
PscI	ACATGT	1 cut(s)	274
PspEI	GGTNACC	1 cut(s)	172
PspN4I	GGNNCC	1 cut(s)	163
PspPI	GGNCC	1 cut(s)	557
PsuI	RGATCY	1 cut(s)	543
RsaI	GTAC	1 cut(s)	387
RsaNI	GTAC	1 cut(s)	386
RseI	CAYNNNNRTG	3 cut(s)	137, 438, 642
SapI	GCTCTTC	1 cut(s)	204
SaqAI	TTAA	2 cut(s)	372, 522
SatI	GCNGC	2 cut(s)	255, 476
Sau3AI	GATC	4 cut(s)	48, 543, 647, 710
Sau96I	GGNCC	1 cut(s)	557
SfaNI	GCATC	5 cut(s)	236, 553, 613, 676, 709
SfcI	CTRYAG	1 cut(s)	333
SfuI	TTCGAA	1 cut(s)	365
SinI	GGWCC	1 cut(s)	557
SmiMI	CAYNNNNRTG	3 cut(s)	137, 438, 642
SmlI	CTYRAG	1 cut(s)	325
SmoI	CTYRAG	1 cut(s)	325
Sse9I	AATT	3 cut(s)	123, 220, 667
SsiI	CCGC	1 cut(s)	195
SspMI	CTAG	1 cut(s)	318
TaaI	ACNGT	3 cut(s)	380, 598, 661
TaiI	ACGT	2 cut(s)	15, 483
TaqI	TCGA	2 cut(s)	93, 365
TasI	AATT	3 cut(s)	123, 220, 667
TatI	WGTACW	1 cut(s)	385
TfiI	GAWTC	3 cut(s)	404, 424, 430
Tru1I	TTAA	2 cut(s)	372, 522
Tru9I	TTAA	2 cut(s)	372, 522
TscAI	CASTG	2 cut(s)	51, 174
TseFI	GTSAC	1 cut(s)	172
TseI	GCWGC	2 cut(s)	254, 475
Tsp45I	GTSAC	1 cut(s)	172
TspDTI	ATGAA	3 cut(s)	417, 502, 510
TspGWI	ACGGA	1 cut(s)	149
TspRI	CASTG	2 cut(s)	51, 174
VpaK11BI	GGWCC	1 cut(s)	557
XceI	RCATGY	1 cut(s)	278
XmnI	GAANNNNTTC	1 cut(s)	213
XspI	CTAG	1 cut(s)	318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.