Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0002268

Physical Location & Seq

Genomic Coordinates Forward (+)

46523704 .. 46553023

Gene Structure 29320 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG250800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGCCAGAGGTAGAACCTTCGTGGTGGATGGACCCTGTAGAATTGCAGAAATTGCAAGAGGAAAGAAGGTCCAAAGTCCGGAGGATTTGTGTCCACATTGCTATTTATTTTCTTGCCGTACTTCCCATTCCACAGATTGTGATATTGGTTATCTTTTCGAGAATGAGAGATTCCATAGTATATACAAGAACACCCATAATCGCGTTCCTTGTTTTACAATATCTGGTACGGGCTTACCAAATCTATCAATCATGTATGAAATTTAAAAGGGTCAGAAGATGGATCAAAGGCGCATTCAATTTTTTGTTGTACATCCTTGCCGCTCATCCAAAAAGAGGACTCGTTCCAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans

Protein Analysis

117

Amino Acids

14.01

Weight (kDa)

10.14

Isoelectric Point (pI)

74.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002268)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g19150 FvH4_4g19150 FvH4_4g19150 FvH4_4g19150 FvH4_4g19150 FvH4_4g19150 FvH4_4g19150
prunus_persica	Prupe.4G109500_v2.0.a1 Prupe.4G109500_v2.0.a1 Prupe.4G109500_v2.0.a1 Prupe.4G109600_v2.0.a1 Prupe.4G109900_v2.0.a1 Prupe.4G263700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0424091 RchiOBHm_Chr5g0019831 RchiOBHm_Chr5g0020211 RchiOBHm_Chr5g0020221
rosa_laevigata	RLG00000007504
rosa_multiflora	Rmu_co8478429.1_g000001 Rmu_sc0002260.1_g000052 Rmu_sc0002260.1_g000058 Rmu_sc0002260.1_g000060
rosa_roxburghii	Rroxscaffold_5G00366100
rosa_rugosa	Rorug04G0192900 Rorug04G0193000 Rorug04G0193100 Rorug04G0193100 Rorug04G0193100 Rorug07G0254600
rosa_samantha	Rh4AG251200 Rh4BG256200 Rh4BG256300 Rh4CG266700 Rh4DG250800 Rh4DG250900 Rh5AG148300 Rh5AG366200 Rh5AG366300 Rh5CG159200
rosa_wichuraiana	Rw4G021640 Rw5G013110 Rw5G013120 Rw5G034340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	323
AccII	CGCG	1 cut(s)	203
AccIII	TCCGGA	1 cut(s)	78
AciI	CCGC	1 cut(s)	321
AclWI	GGATC	1 cut(s)	290
AcsI	RAATTY	1 cut(s)	260
AfaI	GTAC	3 cut(s)	120, 228, 311
AfiI	CCNNNNNNNGG	2 cut(s)	78, 335
AgsI	TTSAA	1 cut(s)	298
AlwI	GGATC	1 cut(s)	290
Aor13HI	TCCGGA	1 cut(s)	78
ApoI	RAATTY	1 cut(s)	260
AspLEI	GCGC	1 cut(s)	293
AspS9I	GGNCC	2 cut(s)	31, 69
AvaII	GGWCC	2 cut(s)	31, 69
BccI	CCATC	2 cut(s)	22, 273
BceAI	ACGGC	1 cut(s)	101
BfmI	CTRYAG	1 cut(s)	36
BisI	GCNGC	1 cut(s)	321
BlsI	GCNGC	1 cut(s)	322
Bme18I	GGWCC	2 cut(s)	31, 69
BmgT120I	GGNCC	2 cut(s)	31, 69
BmiI	GGNNCC	1 cut(s)	33
BsaWI	WCCGGW	1 cut(s)	78
BsaXI	ACNNNNNCTCC	2 cut(s)	73, 103
Bsc4I	CCNNNNNNNGG	2 cut(s)	78, 335
Bse3DI	GCAATG	1 cut(s)	96
BseAI	TCCGGA	1 cut(s)	78
BseGI	GGATG	3 cut(s)	33, 312, 325
BseLI	CCNNNNNNNGG	2 cut(s)	78, 335
BseMI	GCAATG	1 cut(s)	96
Bsh1236I	CGCG	1 cut(s)	203
BsiSI	CCGG	1 cut(s)	79
BslI	CCNNNNNNNGG	2 cut(s)	78, 335
BsmI	GAATGC	1 cut(s)	293
Bsp13I	TCCGGA	1 cut(s)	78
Bsp1407I	TGTACA	1 cut(s)	309
Bsp143I	GATC	1 cut(s)	282
BspACI	CCGC	1 cut(s)	321
BspEI	TCCGGA	1 cut(s)	78
BspFNI	CGCG	1 cut(s)	203
BspLI	GGNNCC	1 cut(s)	33
BspPI	GGATC	1 cut(s)	290
BsrBI	CCGCTC	1 cut(s)	323
BsrDI	GCAATG	1 cut(s)	96
BsrGI	TGTACA	1 cut(s)	309
BssMI	GATC	1 cut(s)	282
BstAPI	GCANNNNNTGC	1 cut(s)	52
BstAUI	TGTACA	1 cut(s)	309
BstF5I	GGATG	3 cut(s)	33, 312, 325
BstFNI	CGCG	1 cut(s)	203
BstHHI	GCGC	1 cut(s)	293
BstKTI	GATC	1 cut(s)	285
BstMBI	GATC	1 cut(s)	282
BstMWI	GCNNNNNNNGC	1 cut(s)	52
BstSFI	CTRYAG	1 cut(s)	36
BstUI	CGCG	1 cut(s)	203
BtsCI	GGATG	3 cut(s)	33, 312, 325
CfoI	GCGC	1 cut(s)	293
Cfr13I	GGNCC	2 cut(s)	31, 69
Csp6I	GTAC	3 cut(s)	119, 227, 310
CviAII	CATG	1 cut(s)	252
CviJI	RGCY	1 cut(s)	233
CviKI_1	RGCY	1 cut(s)	233
CviQI	GTAC	3 cut(s)	119, 227, 310
DpnI	GATC	1 cut(s)	284
DpnII	GATC	1 cut(s)	282
DraI	TTTAAA	1 cut(s)	265
Eco47I	GGWCC	2 cut(s)	31, 69
FaeI	CATG	1 cut(s)	255
FaiI	YATR	6 cut(s)	176, 181, 183, 197, 253, 257
FatI	CATG	1 cut(s)	251
Fnu4HI	GCNGC	1 cut(s)	321
FokI	GGATG	3 cut(s)	40, 299, 312
Fsp4HI	GCNGC	1 cut(s)	321
GlaI	GCGC	1 cut(s)	292
GluI	GCNGC	1 cut(s)	321
HapII	CCGG	1 cut(s)	79
HhaI	GCGC	1 cut(s)	293
Hin1II	CATG	1 cut(s)	255
Hin6I	GCGC	1 cut(s)	291
HinP1I	GCGC	1 cut(s)	291
HinfI	GANTC	2 cut(s)	170, 339
HpaII	CCGG	1 cut(s)	79
Hpy166II	GTNNAC	1 cut(s)	94
Hpy188I	TCNGA	1 cut(s)	275
Hpy188III	TCNNGA	3 cut(s)	79, 159, 347
Hpy8I	GTNNAC	1 cut(s)	94
HpyAV	CCTTC	2 cut(s)	27, 60
HpyCH4V	TGCA	2 cut(s)	46, 55
HpyF10VI	GCNNNNNNNGC	1 cut(s)	52
Hsp92II	CATG	1 cut(s)	255
HspAI	GCGC	1 cut(s)	291
Kpn2I	TCCGGA	1 cut(s)	78
Kzo9I	GATC	1 cut(s)	282
LpnPI	CCDG	4 cut(s)	18, 48, 92, 209
MalI	GATC	1 cut(s)	284
MbiI	CCGCTC	1 cut(s)	323
MboI	GATC	1 cut(s)	282
MboII	GAAGA	1 cut(s)	288
MluCI	AATT	4 cut(s)	41, 50, 260, 298
MlyI	GAGTC	1 cut(s)	333
MnlI	CCTC	3 cut(s)	52, 75, 329
MroI	TCCGGA	1 cut(s)	78
MseI	TTAA	2 cut(s)	264, 352
MspI	CCGG	1 cut(s)	79
Mva1269I	GAATGC	1 cut(s)	293
MvnI	CGCG	1 cut(s)	203
MwoI	GCNNNNNNNGC	1 cut(s)	52
NdeII	GATC	1 cut(s)	282
NlaIII	CATG	1 cut(s)	255
NlaIV	GGNNCC	1 cut(s)	33
PctI	GAATGC	1 cut(s)	293
PfeI	GAWTC	1 cut(s)	170
PkrI	GCNGC	1 cut(s)	322
PleI	GAGTC	1 cut(s)	333
PpsI	GAGTC	1 cut(s)	333
PspN4I	GGNNCC	1 cut(s)	33
PspPI	GGNCC	2 cut(s)	31, 69
RsaI	GTAC	3 cut(s)	120, 228, 311
RsaNI	GTAC	3 cut(s)	119, 227, 310
SaqAI	TTAA	2 cut(s)	264, 352
SatI	GCNGC	1 cut(s)	321
Sau3AI	GATC	1 cut(s)	282
Sau96I	GGNCC	2 cut(s)	31, 69
SchI	GAGTC	1 cut(s)	333
SetI	ASST	3 cut(s)	12, 19, 71
SfcI	CTRYAG	1 cut(s)	36
SinI	GGWCC	2 cut(s)	31, 69
Sse9I	AATT	4 cut(s)	41, 50, 260, 298
SsiI	CCGC	1 cut(s)	321
TaqI	TCGA	1 cut(s)	158
TasI	AATT	4 cut(s)	41, 50, 260, 298
TatI	WGTACW	1 cut(s)	309
TauI	GCSGC	1 cut(s)	323
TfiI	GAWTC	1 cut(s)	170
Tru1I	TTAA	2 cut(s)	264, 352
Tru9I	TTAA	2 cut(s)	264, 352
TspDTI	ATGAA	1 cut(s)	272
VpaK11BI	GGWCC	2 cut(s)	31, 69
XapI	RAATTY	1 cut(s)	260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.