Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0002268

Physical Location & Seq

Genomic Coordinates Forward (+)

42773600 .. 42779256

Gene Structure 5657 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG256200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGGCGTCCGATCAAGGTCGTTCTTGGTTGATGATGGTTGTTTTATTTAAATCGTTGCTTTTGGCGATATTCATTCCGCAATTTAGACCTGTAATGGGGTCGGTAGTGATAATTTGGTTAATAATTTGGTCCGAACTTTCTCTGCCACGGCCATCACGGAAACAAATGTTTGTGGTATCATGTATTGCGGTCTCATTCGATCCTTTGTTCTTATACATCCCAATTGTTGATGAGGATAGCAAGTGCCTGGGAATAGATAAGAAGTTGATGACTGCAGCTCTTGTGCTGCGCTCACTTACAGATACACCTTCCGTGCTCCATATTATACACCAAATTCATAGGGTTGCCGTCATGCCAGAGGTAGAACCTTCGTGGTGGATGGAACCTGTAGAATTGCAGAAATTGCAAGAGGAAAGAAGGTCCAAAATCCGGAGGATTTGTGTCCACATTGCTATTTATTTTCTTGCCGTACTTCCCATTCCACAGATTATGATATTGGTTATCTTTTCGAGAATGAGAGATTCCATACTATATACAAGAACACCCATAATCGCTTACCTTGTTTTACAATATCTGAAGCTGAGAAGATGTTATTTTGATCTAATCCAAGTCATAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans

Protein Analysis

206

Amino Acids

24.11

Weight (kDa)

9.57

Isoelectric Point (pI)

60.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002268)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g19150 FvH4_4g19150 FvH4_4g19150 FvH4_4g19150 FvH4_4g19150 FvH4_4g19150 FvH4_4g19150
prunus_persica	Prupe.4G109500_v2.0.a1 Prupe.4G109500_v2.0.a1 Prupe.4G109500_v2.0.a1 Prupe.4G109600_v2.0.a1 Prupe.4G109900_v2.0.a1 Prupe.4G263700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0424091 RchiOBHm_Chr5g0019831 RchiOBHm_Chr5g0020211 RchiOBHm_Chr5g0020221
rosa_laevigata	RLG00000007504
rosa_multiflora	Rmu_co8478429.1_g000001 Rmu_sc0002260.1_g000052 Rmu_sc0002260.1_g000058 Rmu_sc0002260.1_g000060
rosa_roxburghii	Rroxscaffold_5G00366100
rosa_rugosa	Rorug04G0192900 Rorug04G0193000 Rorug04G0193100 Rorug04G0193100 Rorug04G0193100 Rorug07G0254600
rosa_samantha	Rh4AG251200 Rh4BG256200 Rh4BG256300 Rh4CG266700 Rh4DG250800 Rh4DG250900 Rh5AG148300 Rh5AG366200 Rh5AG366300 Rh5CG159200
rosa_wichuraiana	Rw4G021640 Rw5G013110 Rw5G013120 Rw5G034340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	429
AciI	CCGC	2 cut(s)	77, 188
AclWI	GGATC	1 cut(s)	194
AcoI	YGGCCR	1 cut(s)	149
AcsI	RAATTY	1 cut(s)	333
AcuI	CTGAAG	1 cut(s)	596
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	471
AfiI	CCNNNNNNNGG	2 cut(s)	95, 429
AjnI	CCWGG	1 cut(s)	246
AluBI	AGCT	2 cut(s)	278, 580
AluI	AGCT	2 cut(s)	278, 580
Alw21I	GWGCWC	1 cut(s)	318
Alw26I	GTCTC	1 cut(s)	196
AlwI	GGATC	1 cut(s)	194
Aor13HI	TCCGGA	1 cut(s)	429
AoxI	GGCC	1 cut(s)	149
ApeKI	GCWGC	2 cut(s)	275, 286
ApoI	RAATTY	1 cut(s)	333
AspLEI	GCGC	1 cut(s)	291
AspS9I	GGNCC	2 cut(s)	129, 420
AvaII	GGWCC	2 cut(s)	129, 420
Bbv12I	GWGCWC	1 cut(s)	318
BbvI	GCAGC	2 cut(s)	273, 287
BccI	CCATC	3 cut(s)	28, 160, 373
BceAI	ACGGC	3 cut(s)	164, 332, 452
BciT130I	CCWGG	1 cut(s)	248
BcoDI	GTCTC	1 cut(s)	196
BfmI	CTRYAG	2 cut(s)	273, 387
BisI	GCNGC	2 cut(s)	276, 287
BlsI	GCNGC	2 cut(s)	277, 288
Bme1390I	CCNGG	1 cut(s)	248
Bme18I	GGWCC	2 cut(s)	129, 420
BmgT120I	GGNCC	2 cut(s)	129, 420
BmiI	GGNNCC	1 cut(s)	384
BmrFI	CCNGG	1 cut(s)	248
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	1 cut(s)	196
BsaJI	CCNNGG	2 cut(s)	146, 247
BsaWI	WCCGGW	1 cut(s)	429
BsaXI	ACNNNNNCTCC	2 cut(s)	424, 454
Bsc4I	CCNNNNNNNGG	2 cut(s)	95, 429
Bse3DI	GCAATG	1 cut(s)	447
BseAI	TCCGGA	1 cut(s)	429
BseBI	CCWGG	1 cut(s)	248
BseDI	CCNNGG	2 cut(s)	146, 247
BseGI	GGATG	2 cut(s)	216, 384
BseLI	CCNNNNNNNGG	2 cut(s)	95, 429
BseMI	GCAATG	1 cut(s)	447
BseMII	CTCAG	1 cut(s)	572
BseXI	GCAGC	2 cut(s)	273, 287
BshFI	GGCC	1 cut(s)	151
BsiHKAI	GWGCWC	1 cut(s)	318
BsiSI	CCGG	1 cut(s)	430
BslI	CCNNNNNNNGG	2 cut(s)	95, 429
BsmAI	GTCTC	1 cut(s)	196
BsnI	GGCC	1 cut(s)	151
Bso31I	GGTCTC	1 cut(s)	196
Bsp1286I	GDGCHC	1 cut(s)	318
Bsp13I	TCCGGA	1 cut(s)	429
Bsp143I	GATC	3 cut(s)	10, 199, 598
BspACI	CCGC	2 cut(s)	77, 188
BspANI	GGCC	1 cut(s)	151
BspCNI	CTCAG	1 cut(s)	573
BspEI	TCCGGA	1 cut(s)	429
BspLI	GGNNCC	1 cut(s)	384
BspMAI	CTGCAG	1 cut(s)	277
BspPI	GGATC	1 cut(s)	194
BspTNI	GGTCTC	1 cut(s)	196
BsrDI	GCAATG	1 cut(s)	447
BssECI	CCNNGG	2 cut(s)	146, 247
BssMI	GATC	3 cut(s)	10, 199, 598
BssNI	GRCGYC	1 cut(s)	5
Bst2UI	CCWGG	1 cut(s)	248
BstACI	GRCGYC	1 cut(s)	5
BstAPI	GCANNNNNTGC	1 cut(s)	403
BstDEI	CTNAG	1 cut(s)	581
BstDSI	CCRYGG	1 cut(s)	146
BstF5I	GGATG	2 cut(s)	216, 384
BstHHI	GCGC	1 cut(s)	291
BstKTI	GATC	3 cut(s)	13, 202, 601
BstMAI	GTCTC	1 cut(s)	196
BstMBI	GATC	3 cut(s)	10, 199, 598
BstMWI	GCNNNNNNNGC	1 cut(s)	403
BstNI	CCWGG	1 cut(s)	248
BstSCI	CCNGG	1 cut(s)	246
BstSFI	CTRYAG	2 cut(s)	273, 387
BstV1I	GCAGC	2 cut(s)	273, 287
BsuRI	GGCC	1 cut(s)	151
BtgI	CCRYGG	1 cut(s)	146
BtsCI	GGATG	2 cut(s)	216, 384
CfoI	GCGC	1 cut(s)	291
Cfr13I	GGNCC	2 cut(s)	129, 420
Csp6I	GTAC	1 cut(s)	470
CviAII	CATG	2 cut(s)	180, 352
CviJI	RGCY	3 cut(s)	151, 278, 580
CviKI_1	RGCY	3 cut(s)	151, 278, 580
CviQI	GTAC	1 cut(s)	470
DdeI	CTNAG	1 cut(s)	581
DpnI	GATC	3 cut(s)	12, 201, 600
DpnII	GATC	3 cut(s)	10, 199, 598
DraI	TTTAAA	1 cut(s)	49
EaeI	YGGCCR	1 cut(s)	149
Eco31I	GGTCTC	1 cut(s)	196
Eco47I	GGWCC	2 cut(s)	129, 420
Eco57I	CTGAAG	1 cut(s)	596
EcoRII	CCWGG	1 cut(s)	246
FaeI	CATG	2 cut(s)	183, 355
FatI	CATG	2 cut(s)	179, 351
Fnu4HI	GCNGC	2 cut(s)	276, 287
FokI	GGATG	2 cut(s)	203, 391
Fsp4HI	GCNGC	2 cut(s)	276, 287
GlaI	GCGC	1 cut(s)	290
GluI	GCNGC	2 cut(s)	276, 287
HaeIII	GGCC	1 cut(s)	151
HapII	CCGG	1 cut(s)	430
HhaI	GCGC	1 cut(s)	291
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	2 cut(s)	183, 355
Hin6I	GCGC	1 cut(s)	289
HinP1I	GCGC	1 cut(s)	289
HinfI	GANTC	1 cut(s)	521
HpaII	CCGG	1 cut(s)	430
Hpy166II	GTNNAC	1 cut(s)	445
Hpy188I	TCNGA	3 cut(s)	10, 133, 576
Hpy188III	TCNNGA	2 cut(s)	430, 510
Hpy8I	GTNNAC	1 cut(s)	445
HpyAV	CCTTC	3 cut(s)	318, 378, 411
HpyCH4V	TGCA	3 cut(s)	275, 397, 406
HpyF10VI	GCNNNNNNNGC	1 cut(s)	403
HpyF3I	CTNAG	1 cut(s)	581
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	2 cut(s)	183, 355
HspAI	GCGC	1 cut(s)	289
Kpn2I	TCCGGA	1 cut(s)	429
Kzo9I	GATC	3 cut(s)	10, 199, 598
LmnI	GCTCC	1 cut(s)	321
LpnPI	CCDG	6 cut(s)	102, 233, 260, 369, 399, 443
Lsp1109I	GCAGC	2 cut(s)	273, 287
MalI	GATC	3 cut(s)	12, 201, 600
MboI	GATC	3 cut(s)	10, 199, 598
MboII	GAAGA	1 cut(s)	597
MfeI	CAATTG	1 cut(s)	222
MhlI	GDGCHC	1 cut(s)	318
MluCI	AATT	7 cut(s)	80, 111, 123, 222, 333, 392, 401
MnlI	CCTC	4 cut(s)	226, 352, 403, 426
MroI	TCCGGA	1 cut(s)	429
MseI	TTAA	2 cut(s)	48, 119
MspI	CCGG	1 cut(s)	430
MspR9I	CCNGG	1 cut(s)	248
MunI	CAATTG	1 cut(s)	222
MvaI	CCWGG	1 cut(s)	248
MwoI	GCNNNNNNNGC	1 cut(s)	403
NdeII	GATC	3 cut(s)	10, 199, 598
NlaIII	CATG	2 cut(s)	183, 355
NlaIV	GGNNCC	1 cut(s)	384
PfeI	GAWTC	1 cut(s)	521
PkrI	GCNGC	2 cut(s)	277, 288
Psp6I	CCWGG	1 cut(s)	246
PspGI	CCWGG	1 cut(s)	246
PspN4I	GGNNCC	1 cut(s)	384
PspPI	GGNCC	2 cut(s)	129, 420
PstI	CTGCAG	1 cut(s)	277
RsaI	GTAC	1 cut(s)	471
RsaNI	GTAC	1 cut(s)	470
SaqAI	TTAA	2 cut(s)	48, 119
SatI	GCNGC	2 cut(s)	276, 287
Sau3AI	GATC	3 cut(s)	10, 199, 598
Sau96I	GGNCC	2 cut(s)	129, 420
ScrFI	CCNGG	1 cut(s)	248
SduI	GDGCHC	1 cut(s)	318
SfcI	CTRYAG	2 cut(s)	273, 387
SinI	GGWCC	2 cut(s)	129, 420
SmiI	ATTTAAAT	1 cut(s)	49
Sse9I	AATT	7 cut(s)	80, 111, 123, 222, 333, 392, 401
SsiI	CCGC	2 cut(s)	77, 188
StyD4I	CCNGG	1 cut(s)	246
SwaI	ATTTAAAT	1 cut(s)	49
TaqI	TCGA	2 cut(s)	198, 509
TasI	AATT	7 cut(s)	80, 111, 123, 222, 333, 392, 401
TfiI	GAWTC	1 cut(s)	521
Tru1I	TTAA	2 cut(s)	48, 119
Tru9I	TTAA	2 cut(s)	48, 119
TseI	GCWGC	2 cut(s)	275, 286
TspDTI	ATGAA	2 cut(s)	61, 326
TspGWI	ACGGA	2 cut(s)	172, 301
VpaK11BI	GGWCC	2 cut(s)	129, 420
XapI	RAATTY	1 cut(s)	333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.