Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0002886

Physical Location & Seq

Genomic Coordinates Forward (+)

593906 .. 597456

Gene Structure 3551 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G004800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGGCGGTTGAGAAAGGAAGGTACTGTGTAACAGGGGCTGGCGGGTTCGTTGCGTCTTGGGTCGTTAAGCTTCTGCTTTCCAAGGATTGTACTGTCCACGGCACCGTTAGAGACCCCAGCAATGACAAGTACGCCCACTTGAAAAAACTTGACAAGGCATCTGAGAACCTTCAACTATTCAAAGCTGACTTATTGGACTATGAGTCCCTTCGTGCAGGGATTCTAGGATGCGACGGAGTATTTCATGTTGCTAGTCCAGTCCCCTCCAGCACTGTGCCAAATCCTGAGGTAGAAGTCGTTGAACCTGCTGTGAAGGGAACACTTAATGTACTTAAAGCATGCCTTGAAGCAAAAGTCAAACGAGTTGTTTTTGTGTCCTCTGTTGCTGCTGTGATCATGAATCCTAGGTGGTCTGAAGGTCAATTGTTGGATGAAACTTGTTGGTCGGATAAGGAATACTGCAGAAAAACTGAGAATTGGTATAGTCTTTCAAAAACTTTAGCAGAATGGGAGGCTCTGGAGTTTGCAAGAAGAAATGGGCTTGACTTGGTAACTGTCTGTCCTACACTTATTTTGGGGCCAATTCTGCAGTCCACTGTAAATGCAAGTACCTTGGTCCTCATCAAGCTTTTGAAAGAAGGGTATGAGTCATTGGAAAACAAGGTCCGAATGATAGTTGATGTGCGGGATGTAGCTCAAGCAGTCCTTGTGGCGTATGCGATGCCCGAGGCTGAAGGAAGATACATATGCACCGGCCACCATATCAAGGCAAGAGATCTCGTCGAGGAGCTGAGGAGCATTTATCCTGACTACAATTATCCTAACAACTTTATTGAAGTAGAAGAACAACAGCGGTTGAGCTATGAGAAACTGCAAAGGTTGGGTTGGAGTGCCCGACCATTGAATGAGACGCTCGTTGACACTGTTGAAAGCTACAAAGAGGCCGGACTTTTGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Epimerase

Protein Analysis

320

Amino Acids

35.67

Weight (kDa)

5.46

Isoelectric Point (pI)

39.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002886)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33590 AT2G33600
fragaria_vesca	FvH4_5g26020 FvH4_5g26020
malus_domestica	MD06G1003200.v1.1 MD06G1003400.v1.1 MD06G1003500.v1.1
prunus_persica	Prupe.5G004800_v2.0.a1
pyrus_communis	pycom06g00330
rosa_chinensis	RchiOBHm_Chr7g0216761 RchiOBHm_Chr7g0216771
rosa_laevigata	RLG00000002535 RLG00000002539
rosa_multiflora	Rmu_sc0000125.1_g000024 Rmu_sc0004941.1_g000013 Rmu_sc0004941.1_g000018
rosa_roxburghii	Rroxscaffold_3G00242880 Rroxscaffold_3G00242920 Rroxscaffold_3G00242940
rosa_rugosa	Rorug07G0148400 Rorug07G0162200 Rorug07G0162200 Rorug07G0162300 Rorug07G0162400 Rorug07G0162800 Rorug07G0162900
rosa_samantha	Rh7AG302400 Rh7AG302600 Rh7AG302800 Rh7BG293900 Rh7BG294000 Rh7BG294200 Rh7CG321100 Rh7CG321400 Rh7DG303000
rosa_wichuraiana	Rw7G025680 Rw7G025700 Rw7G025720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	313
AccB1I	GGYRCC	1 cut(s)	101
AciI	CCGC	4 cut(s)	5, 42, 685, 853
AcoI	YGGCCR	1 cut(s)	754
AcuI	CTGAAG	2 cut(s)	435, 753
AfaI	GTAC	5 cut(s)	23, 91, 131, 330, 610
AfiI	CCNNNNNNNGG	1 cut(s)	766
AhdI	GACNNNNNGTC	1 cut(s)	202
AluBI	AGCT	7 cut(s)	70, 185, 628, 695, 790, 861, 933
AluI	AGCT	7 cut(s)	70, 185, 628, 695, 790, 861, 933
Alw26I	GTCTC	2 cut(s)	105, 902
AlwNI	CAGNNNCTG	1 cut(s)	38
Ama87I	CYCGRG	1 cut(s)	725
AoxI	GGCC	3 cut(s)	578, 754, 942
ApeKI	GCWGC	1 cut(s)	386
AspA2I	CCTAGG	1 cut(s)	404
AspS9I	GGNCC	3 cut(s)	578, 616, 664
AvaI	CYCGRG	1 cut(s)	725
AvaII	GGWCC	2 cut(s)	616, 664
AvrII	CCTAGG	1 cut(s)	404
AxyI	CCTNAGG	1 cut(s)	285
BaeGI	GKGCMC	1 cut(s)	895
BanI	GGYRCC	1 cut(s)	101
BbvCI	CCTCAGC	1 cut(s)	791
BbvI	GCAGC	1 cut(s)	373
BceAI	ACGGC	1 cut(s)	115
BclI	TGATCA	1 cut(s)	393
BcoDI	GTCTC	2 cut(s)	105, 902
BfaI	CTAG	3 cut(s)	224, 252, 405
BfmI	CTRYAG	2 cut(s)	460, 587
BfuAI	ACCTGC	1 cut(s)	313
BglII	AGATCT	1 cut(s)	775
BisI	GCNGC	1 cut(s)	387
BlnI	CCTAGG	1 cut(s)	404
BlsI	GCNGC	1 cut(s)	388
Bme18I	GGWCC	2 cut(s)	616, 664
BmeRI	GACNNNNNGTC	1 cut(s)	202
BmeT110I	CYCGRG	1 cut(s)	725
BmgT120I	GGNCC	3 cut(s)	578, 616, 664
BmiI	GGNNCC	2 cut(s)	103, 579
BmsI	GCATC	3 cut(s)	167, 218, 711
BpmI	CTGGAG	2 cut(s)	250, 539
Bpu10I	CCTNAGC	1 cut(s)	791
BpuEI	CTTGAG	1 cut(s)	681
BsaI	GGTCTC	1 cut(s)	105
BsaJI	CCNNGG	5 cut(s)	81, 97, 404, 612, 726
Bsc4I	CCNNNNNNNGG	1 cut(s)	766
Bse118I	RCCGGY	1 cut(s)	752
Bse1I	ACTGG	1 cut(s)	257
Bse21I	CCTNAGG	1 cut(s)	285
Bse3DI	GCAATG	1 cut(s)	127
BseDI	CCNNGG	5 cut(s)	81, 97, 404, 612, 726
BseGI	GGATG	3 cut(s)	233, 436, 694
BseLI	CCNNNNNNNGG	1 cut(s)	766
BseMI	GCAATG	1 cut(s)	127
BseMII	CTCAG	4 cut(s)	153, 276, 462, 782
BseNI	ACTGG	1 cut(s)	257
BseRI	GAGGAG	2 cut(s)	800, 808
BseSI	GKGCMC	1 cut(s)	895
BseXI	GCAGC	1 cut(s)	373
BseYI	CCCAGC	1 cut(s)	116
BsgI	GTGCAG	1 cut(s)	234
BshFI	GGCC	3 cut(s)	580, 756, 944
BshNI	GGYRCC	1 cut(s)	101
BsiHKCI	CYCGRG	1 cut(s)	725
BsiSI	CCGG	2 cut(s)	753, 945
BslFI	GGGAC	2 cut(s)	190, 245
BslI	CCNNNNNNNGG	1 cut(s)	766
BsmAI	GTCTC	2 cut(s)	105, 902
BsmBI	CGTCTC	1 cut(s)	902
BsmFI	GGGAC	2 cut(s)	190, 245
BsnI	GGCC	3 cut(s)	580, 756, 944
Bso31I	GGTCTC	1 cut(s)	105
BsoBI	CYCGRG	1 cut(s)	725
Bsp1286I	GDGCHC	1 cut(s)	895
Bsp143I	GATC	2 cut(s)	393, 775
BspACI	CCGC	4 cut(s)	5, 42, 685, 853
BspANI	GGCC	3 cut(s)	580, 756, 944
BspCNI	CTCAG	4 cut(s)	154, 277, 463, 783
BspHI	TCATGA	1 cut(s)	396
BspLI	GGNNCC	2 cut(s)	103, 579
BspMAI	CTGCAG	2 cut(s)	464, 591
BspMI	ACCTGC	1 cut(s)	313
BspT107I	GGYRCC	1 cut(s)	101
BspTNI	GGTCTC	1 cut(s)	105
BsrDI	GCAATG	1 cut(s)	127
BsrFI	RCCGGY	1 cut(s)	752
BsrI	ACTGG	1 cut(s)	257
BssAI	RCCGGY	1 cut(s)	752
BssECI	CCNNGG	5 cut(s)	81, 97, 404, 612, 726
BssMI	GATC	2 cut(s)	393, 775
BssT1I	CCWWGG	3 cut(s)	81, 404, 612
Bst4CI	ACNGT	7 cut(s)	26, 94, 106, 274, 556, 598, 925
BstC8I	GCNNGC	2 cut(s)	40, 340
BstDEI	CTNAG	4 cut(s)	162, 285, 471, 791
BstDSI	CCRYGG	1 cut(s)	97
BstF5I	GGATG	3 cut(s)	233, 436, 694
BstKTI	GATC	2 cut(s)	396, 778
BstMAI	GTCTC	2 cut(s)	105, 902
BstMBI	GATC	2 cut(s)	393, 775
BstMWI	GCNNNNNNNGC	1 cut(s)	586
BstNSI	RCATGY	1 cut(s)	342
BstSFI	CTRYAG	2 cut(s)	460, 587
BstSLI	GKGCMC	1 cut(s)	895
BstV1I	GCAGC	1 cut(s)	373
BstX2I	RGATCY	1 cut(s)	775
BstYI	RGATCY	1 cut(s)	775
Bsu36I	CCTNAGG	1 cut(s)	285
BsuRI	GGCC	3 cut(s)	580, 756, 944
BtgI	CCRYGG	1 cut(s)	97
BtgZI	GCGATG	1 cut(s)	734
BtsCI	GGATG	3 cut(s)	233, 436, 694
BtsIMutI	CAGTG	3 cut(s)	270, 594, 921
BveI	ACCTGC	1 cut(s)	313
Cac8I	GCNNGC	2 cut(s)	40, 340
CaiI	CAGNNNCTG	1 cut(s)	38
CciI	TCATGA	1 cut(s)	396
Cfr10I	RCCGGY	1 cut(s)	752
Cfr13I	GGNCC	3 cut(s)	578, 616, 664
CseI	GACGC	2 cut(s)	42, 919
Csp6I	GTAC	5 cut(s)	22, 90, 130, 329, 609
CviAII	CATG	3 cut(s)	245, 339, 397
CviQI	GTAC	5 cut(s)	22, 90, 130, 329, 609
DdeI	CTNAG	4 cut(s)	162, 285, 471, 791
DpnI	GATC	2 cut(s)	395, 777
DpnII	GATC	2 cut(s)	393, 775
DriI	GACNNNNNGTC	1 cut(s)	202
EaeI	YGGCCR	1 cut(s)	754
Eam1105I	GACNNNNNGTC	1 cut(s)	202
Eco130I	CCWWGG	3 cut(s)	81, 404, 612
Eco31I	GGTCTC	1 cut(s)	105
Eco47I	GGWCC	2 cut(s)	616, 664
Eco57I	CTGAAG	2 cut(s)	435, 753
Eco81I	CCTNAGG	1 cut(s)	285
Eco88I	CYCGRG	1 cut(s)	725
EcoT14I	CCWWGG	3 cut(s)	81, 404, 612
ErhI	CCWWGG	3 cut(s)	81, 404, 612
Esp3I	CGTCTC	1 cut(s)	902
FaeI	CATG	3 cut(s)	248, 342, 400
FalI	AAGNNNNNCTT	4 cut(s)	327, 359, 690, 722
FaqI	GGGAC	2 cut(s)	190, 245
FatI	CATG	3 cut(s)	244, 338, 396
FauI	CCCGC	2 cut(s)	35, 678
FauNDI	CATATG	1 cut(s)	746
FbaI	TGATCA	1 cut(s)	393
Fnu4HI	GCNGC	1 cut(s)	387
FokI	GGATG	3 cut(s)	240, 443, 701
Fsp4HI	GCNGC	1 cut(s)	387
FspBI	CTAG	3 cut(s)	224, 252, 405
GluI	GCNGC	1 cut(s)	387
GsaI	CCCAGC	1 cut(s)	120
GsuI	CTGGAG	2 cut(s)	250, 539
HaeIII	GGCC	3 cut(s)	580, 756, 944
HapII	CCGG	2 cut(s)	753, 945
HgaI	GACGC	2 cut(s)	42, 919
Hin1II	CATG	3 cut(s)	248, 342, 400
HincII	GTYRAC	1 cut(s)	919
HindII	GTYRAC	1 cut(s)	919
HindIII	AAGCTT	2 cut(s)	68, 626
HinfI	GANTC	4 cut(s)	203, 220, 400, 647
HpaII	CCGG	2 cut(s)	753, 945
Hpy166II	GTNNAC	3 cut(s)	97, 594, 919
Hpy188I	TCNGA	4 cut(s)	163, 415, 448, 668
Hpy188III	TCNNGA	4 cut(s)	284, 397, 518, 806
Hpy8I	GTNNAC	3 cut(s)	97, 594, 919
Hpy99I	CGWCG	2 cut(s)	236, 785
HpyAV	CCTTC	7 cut(s)	12, 179, 218, 307, 410, 632, 728
HpyCH4III	ACNGT	7 cut(s)	26, 94, 106, 274, 556, 598, 925
HpyCH4V	TGCA	7 cut(s)	215, 462, 527, 589, 605, 750, 874
HpyF10VI	GCNNNNNNNGC	1 cut(s)	586
HpyF3I	CTNAG	4 cut(s)	162, 285, 471, 791
Hsp92II	CATG	3 cut(s)	248, 342, 400
Ksp22I	TGATCA	1 cut(s)	393
Kzo9I	GATC	2 cut(s)	393, 775
LmnI	GCTCC	2 cut(s)	787, 795
Lsp1109I	GCAGC	1 cut(s)	373
LweI	GCATC	3 cut(s)	167, 218, 711
MaeI	CTAG	3 cut(s)	224, 252, 405
MaeIII	GTNAC	2 cut(s)	28, 550
MalI	GATC	2 cut(s)	395, 777
MboI	GATC	2 cut(s)	393, 775
MboII	GAAGA	3 cut(s)	543, 750, 854
MfeI	CAATTG	1 cut(s)	422
MflI	RGATCY	1 cut(s)	775
MhlI	GDGCHC	1 cut(s)	895
MluCI	AATT	4 cut(s)	422, 475, 582, 814
MlyI	GAGTC	2 cut(s)	212, 656
MmeI	TCCRAC	3 cut(s)	408, 426, 866
MnlI	CCTC	9 cut(s)	274, 280, 388, 505, 629, 721, 778, 786, 934
MseI	TTAA	3 cut(s)	66, 324, 333
MspA1I	CMGCKG	1 cut(s)	853
MspI	CCGG	2 cut(s)	753, 945
MunI	CAATTG	1 cut(s)	422
MwoI	GCNNNNNNNGC	1 cut(s)	586
NdeI	CATATG	1 cut(s)	746
NdeII	GATC	2 cut(s)	393, 775
NlaIII	CATG	3 cut(s)	248, 342, 400
NlaIV	GGNNCC	2 cut(s)	103, 579
NspI	RCATGY	1 cut(s)	342
PaeI	GCATGC	1 cut(s)	342
PagI	TCATGA	1 cut(s)	396
PfeI	GAWTC	2 cut(s)	220, 400
PkrI	GCNGC	1 cut(s)	388
PleI	GAGTC	2 cut(s)	211, 655
PpsI	GAGTC	2 cut(s)	211, 655
PspFI	CCCAGC	1 cut(s)	116
PspN4I	GGNNCC	2 cut(s)	103, 579
PspPI	GGNCC	3 cut(s)	578, 616, 664
PstI	CTGCAG	2 cut(s)	464, 591
PstNI	CAGNNNCTG	1 cut(s)	38
PsuI	RGATCY	1 cut(s)	775
RsaI	GTAC	5 cut(s)	23, 91, 131, 330, 610
RsaNI	GTAC	5 cut(s)	22, 90, 130, 329, 609
SaqAI	TTAA	3 cut(s)	66, 324, 333
SatI	GCNGC	1 cut(s)	387
Sau3AI	GATC	2 cut(s)	393, 775
Sau96I	GGNCC	3 cut(s)	578, 616, 664
SchI	GAGTC	2 cut(s)	212, 656
SduI	GDGCHC	1 cut(s)	895
SfaNI	GCATC	3 cut(s)	167, 218, 711
SfcI	CTRYAG	2 cut(s)	460, 587
SinI	GGWCC	2 cut(s)	616, 664
SmlI	CTYRAG	1 cut(s)	696
SmoI	CTYRAG	1 cut(s)	696
SphI	GCATGC	1 cut(s)	342
Sse9I	AATT	4 cut(s)	422, 475, 582, 814
SsiI	CCGC	4 cut(s)	5, 42, 685, 853
SspMI	CTAG	3 cut(s)	224, 252, 405
StyI	CCWWGG	3 cut(s)	81, 404, 612
TaaI	ACNGT	7 cut(s)	26, 94, 106, 274, 556, 598, 925
TaqI	TCGA	1 cut(s)	783
TasI	AATT	4 cut(s)	422, 475, 582, 814
TatI	WGTACW	2 cut(s)	89, 328
TfiI	GAWTC	2 cut(s)	220, 400
Tru1I	TTAA	3 cut(s)	66, 324, 333
Tru9I	TTAA	3 cut(s)	66, 324, 333
TscAI	CASTG	3 cut(s)	277, 601, 928
TseI	GCWGC	1 cut(s)	386
TspDTI	ATGAA	3 cut(s)	233, 413, 447
TspGWI	ACGGA	1 cut(s)	249
TspRI	CASTG	3 cut(s)	277, 601, 928
VpaK11BI	GGWCC	2 cut(s)	616, 664
XceI	RCATGY	1 cut(s)	342
XmaJI	CCTAGG	1 cut(s)	404
XspI	CTAG	3 cut(s)	224, 252, 405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.