Rh7BG293900

Cinnamoyl-CoA reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0002886
Physical Location & Seq
Reverse (-)
27594987 .. 27595372
386 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG293900.1

Sequence Viewer

Length: 252 bp
ATGGTATATGAGAAGCAGGAGGCTGAAGGAAGATACATATGCAAGTCCCACAATGTTAAGAATGGGGATCTAGTTGAGAAGCTGAGGCGCCTTTATCCTAATTACAATTATCCGAAGAATTTTGTTGAAGTAGACGAAGACATAAAGGTGAGCTCAGCGAAACTGCAAAGGCTAGGTTGGAGTTACCGGGCATTGGATGAGACTCTCATCGACTCTGTTGAAAGCTACCGGGAAGCTGGACTATTGCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Epimerase

Protein Analysis

83

Amino Acids

9.78

Weight (kDa)

6.1

Isoelectric Point (pI)

28.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 87
AccI GTMKAC 1 cut(s) 132
AclWI GGATC 1 cut(s) 75
AcsI RAATTY 1 cut(s) 118
AcuI CTGAAG 1 cut(s) 45
AcyI GRCGYC 1 cut(s) 88
AfiI CCNNNNNNNGG 1 cut(s) 193
AgsI TTSAA 2 cut(s) 128, 221
AluBI AGCT 4 cut(s) 82, 153, 225, 236
AluI AGCT 4 cut(s) 82, 153, 225, 236
Alw21I GWGCWC 1 cut(s) 155
Alw26I GTCTC 1 cut(s) 194
AlwI GGATC 1 cut(s) 75
ApoI RAATTY 1 cut(s) 118
AspLEI GCGC 1 cut(s) 90
AsuC2I CCSGG 2 cut(s) 188, 230
AsuHPI GGTGA 1 cut(s) 160
BanI GGYRCC 1 cut(s) 87
BanII GRGCYC 1 cut(s) 155
BbsI GAAGAC 1 cut(s) 144
Bbv12I GWGCWC 1 cut(s) 155
BbvCI CCTCAGC 1 cut(s) 83
BcnI CCSGG 2 cut(s) 188, 230
BcoDI GTCTC 1 cut(s) 194
BfaI CTAG 2 cut(s) 71, 173
BfoI RGCGCY 1 cut(s) 91
BlpI GCTNAGC 1 cut(s) 154
Bme1390I CCNGG 2 cut(s) 188, 230
BmiI GGNNCC 1 cut(s) 89
BmrFI CCNGG 2 cut(s) 188, 230
BpiI GAAGAC 1 cut(s) 144
Bpu10I CCTNAGC 1 cut(s) 83
Bpu1102I GCTNAGC 1 cut(s) 154
BpuMI CCSGG 2 cut(s) 188, 230
BsaHI GRCGYC 1 cut(s) 88
Bsc4I CCNNNNNNNGG 1 cut(s) 193
BseGI GGATG 1 cut(s) 202
BseLI CCNNNNNNNGG 1 cut(s) 193
BseMII CTCAG 2 cut(s) 74, 168
BshNI GGYRCC 1 cut(s) 87
BsiHKAI GWGCWC 1 cut(s) 155
BsiSI CCGG 2 cut(s) 187, 229
BslFI GGGAC 1 cut(s) 31
BslI CCNNNNNNNGG 1 cut(s) 193
BsmAI GTCTC 1 cut(s) 194
BsmFI GGGAC 1 cut(s) 31
Bsp1286I GDGCHC 1 cut(s) 155
Bsp143I GATC 1 cut(s) 67
Bsp1720I GCTNAGC 1 cut(s) 154
BspCNI CTCAG 2 cut(s) 75, 167
BspLI GGNNCC 1 cut(s) 89
BspPI GGATC 1 cut(s) 75
BspT107I GGYRCC 1 cut(s) 87
BssMI GATC 1 cut(s) 67
BssNI GRCGYC 1 cut(s) 88
BstACI GRCGYC 1 cut(s) 88
BstDEI CTNAG 2 cut(s) 83, 154
BstF5I GGATG 1 cut(s) 202
BstH2I RGCGCY 1 cut(s) 91
BstHHI GCGC 1 cut(s) 90
BstKTI GATC 1 cut(s) 70
BstMAI GTCTC 1 cut(s) 194
BstMBI GATC 1 cut(s) 67
BstSCI CCNGG 2 cut(s) 186, 228
BstV2I GAAGAC 1 cut(s) 144
BstX2I RGATCY 1 cut(s) 67
BstYI RGATCY 1 cut(s) 67
BtsCI GGATG 1 cut(s) 202
CfoI GCGC 1 cut(s) 90
CviJI RGCY 6 cut(s) 23, 82, 153, 172, 225, 236
CviKI_1 RGCY 6 cut(s) 23, 82, 153, 172, 225, 236
DdeI CTNAG 2 cut(s) 83, 154
DinI GGCGCC 1 cut(s) 89
DpnI GATC 1 cut(s) 69
DpnII GATC 1 cut(s) 67
Ecl136II GAGCTC 1 cut(s) 153
Eco24I GRGCYC 1 cut(s) 155
Eco53kI GAGCTC 1 cut(s) 153
Eco57I CTGAAG 1 cut(s) 45
EcoICRI GAGCTC 1 cut(s) 153
EcoT38I GRGCYC 1 cut(s) 155
EgeI GGCGCC 1 cut(s) 89
EheI GGCGCC 1 cut(s) 89
FaiI YATR 5 cut(s) 7, 9, 38, 40, 143
FaqI GGGAC 1 cut(s) 31
FauNDI CATATG 1 cut(s) 38
FblI GTMKAC 1 cut(s) 132
FokI GGATG 1 cut(s) 209
FriOI GRGCYC 1 cut(s) 155
FspBI CTAG 2 cut(s) 71, 173
GlaI GCGC 1 cut(s) 89
HaeII RGCGCY 1 cut(s) 91
HapII CCGG 2 cut(s) 187, 229
HhaI GCGC 1 cut(s) 90
Hin1I GRCGYC 1 cut(s) 88
Hin6I GCGC 1 cut(s) 88
HinP1I GCGC 1 cut(s) 88
HinfI GANTC 2 cut(s) 202, 212
HpaII CCGG 2 cut(s) 187, 229
HphI GGTGA 1 cut(s) 160
Hpy166II GTNNAC 1 cut(s) 133
Hpy188I TCNGA 1 cut(s) 114
Hpy8I GTNNAC 1 cut(s) 133
HpyAV CCTTC 1 cut(s) 20
HpyCH4V TGCA 3 cut(s) 42, 166, 247
HpyF3I CTNAG 2 cut(s) 83, 154
Hsp92I GRCGYC 1 cut(s) 88
HspAI GCGC 1 cut(s) 88
KasI GGCGCC 1 cut(s) 87
Kzo9I GATC 1 cut(s) 67
LpnPI CCDG 4 cut(s) 2, 200, 222, 242
MaeI CTAG 2 cut(s) 71, 173
MaeIII GTNAC 1 cut(s) 182
MalI GATC 1 cut(s) 69
MboI GATC 1 cut(s) 67
MboII GAAGA 3 cut(s) 42, 127, 149
MflI RGATCY 1 cut(s) 67
MhlI GDGCHC 1 cut(s) 155
MluCI AATT 3 cut(s) 100, 106, 118
Mly113I GGCGCC 1 cut(s) 88
MlyI GAGTC 2 cut(s) 196, 206
MmeI TCCRAC 1 cut(s) 158
MnlI CCTC 2 cut(s) 13, 78
MseI TTAA 1 cut(s) 57
MslI CAYNNNNRTG 1 cut(s) 146
MspI CCGG 2 cut(s) 187, 229
MspR9I CCNGG 2 cut(s) 188, 230
NarI GGCGCC 1 cut(s) 88
NciI CCSGG 2 cut(s) 188, 230
NdeI CATATG 1 cut(s) 38
NdeII GATC 1 cut(s) 67
NlaIV GGNNCC 1 cut(s) 89
PleI GAGTC 2 cut(s) 196, 206
PluTI GGCGCC 1 cut(s) 91
PpsI GAGTC 2 cut(s) 196, 206
Psp124BI GAGCTC 1 cut(s) 155
PspN4I GGNNCC 1 cut(s) 89
PsuI RGATCY 1 cut(s) 67
RseI CAYNNNNRTG 1 cut(s) 146
SacI GAGCTC 1 cut(s) 155
SaqAI TTAA 1 cut(s) 57
Sau3AI GATC 1 cut(s) 67
SchI GAGTC 2 cut(s) 196, 206
ScrFI CCNGG 2 cut(s) 188, 230
SduI GDGCHC 1 cut(s) 155
SetI ASST 6 cut(s) 84, 150, 155, 178, 227, 238
SfoI GGCGCC 1 cut(s) 89
SgeI CNNG 8 cut(s) 29, 55, 83, 185, 199, 200, 241, 242
SmiMI CAYNNNNRTG 1 cut(s) 146
Sse9I AATT 3 cut(s) 100, 106, 118
SspDI GGCGCC 1 cut(s) 87
SspMI CTAG 2 cut(s) 71, 173
SstI GAGCTC 1 cut(s) 155
StyD4I CCNGG 2 cut(s) 186, 228
TaqI TCGA 1 cut(s) 210
TasI AATT 3 cut(s) 100, 106, 118
Tru1I TTAA 1 cut(s) 57
Tru9I TTAA 1 cut(s) 57
XapI RAATTY 1 cut(s) 118
XmiI GTMKAC 1 cut(s) 132
XspI CTAG 2 cut(s) 71, 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.