Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004941.1

Orthogroup ID

OG0002886

Physical Location & Seq

Genomic Coordinates Forward (+)

35364 .. 38008

Gene Structure 2645 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004941.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

atggcagttcagaatggaaggttctgtgttacaggggctggaggcttcgttggctcctgggtcgttaagattcttctttccaagaactgcatagtccacggaaccgtcagagaacccacggatgacaagaactctcacttgagaaagcttgacaaggcatctgagaacctgaaactattcaaggcagacttattggattatgactctcttcgttcggcaattgaaggatgtgatggagtatttcatgttgccagtcccgctccctccggcagtgtgccaaatcctgagattgagttaattgaacctgctgttaaggggacacttaatgtacttaaagcatcacttgaaacaaaagtcaagcgagttgtttctgtgtcctctattgctgctgtggccgcgaatcctacgttggctgaaggtcaagttttggatgagtcttgttggtcagataaggaatactgcagaaatactgagaactggtattgcctttcaaaaactgaagcagaatctgaggctctgcagtttgcaaaaacaaccgggattgatcttgtgactgtttgtcctacacttatacttggcccaattctgcagtcgactgtaaatgcaagtaccttcatcttcatcaagcttttgaaggaagggaaggagtcactggaaaacaggcctcagaagatagttgacgtacgggatttagctgaagcacttcttatggcatatgagaagccggaggctgaaggaagatacatatgcatgtcccacaatgttaagaatggggatctagttgagaagctgaggcgcctttatcctgattacaattatccgaagaactttattgaagtaggcaaagacagacaggtgagctcagagaaattgcaaaggctaggttggagttacaggtcattggacgatactctcattgactctgttgaaagctaccgggaggctggactattggattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Epimerase

Protein Analysis

319

Amino Acids

35.31

Weight (kDa)

5.48

Isoelectric Point (pI)

40.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002886)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33590 AT2G33600
fragaria_vesca	FvH4_5g26020 FvH4_5g26020
malus_domestica	MD06G1003200.v1.1 MD06G1003400.v1.1 MD06G1003500.v1.1
prunus_persica	Prupe.5G004800_v2.0.a1
pyrus_communis	pycom06g00330
rosa_chinensis	RchiOBHm_Chr7g0216761 RchiOBHm_Chr7g0216771
rosa_laevigata	RLG00000002535 RLG00000002539
rosa_multiflora	Rmu_sc0000125.1_g000024 Rmu_sc0004941.1_g000013 Rmu_sc0004941.1_g000018
rosa_roxburghii	Rroxscaffold_3G00242880 Rroxscaffold_3G00242920 Rroxscaffold_3G00242940
rosa_rugosa	Rorug07G0148400 Rorug07G0162200 Rorug07G0162200 Rorug07G0162300 Rorug07G0162400 Rorug07G0162800 Rorug07G0162900
rosa_samantha	Rh7AG302400 Rh7AG302600 Rh7AG302800 Rh7BG293900 Rh7BG294000 Rh7BG294200 Rh7CG321100 Rh7CG321400 Rh7DG303000
rosa_wichuraiana	Rw7G025680 Rw7G025700 Rw7G025720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	313
AccB1I	GGYRCC	1 cut(s)	795
AccBSI	CCGCTC	1 cut(s)	260
AccI	GTMKAC	1 cut(s)	593
AccII	CGCG	1 cut(s)	398
AciI	CCGC	2 cut(s)	258, 396
AclWI	GGATC	1 cut(s)	783
AcoI	YGGCCR	1 cut(s)	393
AcuI	CTGAAG	4 cut(s)	435, 519, 717, 753
AcyI	GRCGYC	1 cut(s)	796
AfaI	GTAC	3 cut(s)	330, 610, 684
AgsI	TTSAA	8 cut(s)	181, 224, 302, 347, 492, 634, 836, 929
AhdI	GACNNNNNGTC	1 cut(s)	558
AjnI	CCWGG	1 cut(s)	56
AjuI	GAANNNNNNNTTGG	2 cut(s)	392, 424
AluBI	AGCT	6 cut(s)	148, 628, 695, 790, 861, 933
AluI	AGCT	6 cut(s)	148, 628, 695, 790, 861, 933
Alw21I	GWGCWC	1 cut(s)	863
AlwI	GGATC	1 cut(s)	783
AlwNI	CAGNNNCTG	2 cut(s)	38, 509
AoxI	GGCC	3 cut(s)	393, 577, 662
ApeKI	GCWGC	1 cut(s)	386
Asp700I	GAANNNNTTC	2 cut(s)	176, 702
AspLEI	GCGC	1 cut(s)	798
AspS9I	GGNCC	1 cut(s)	578
AsuC2I	CCSGG	2 cut(s)	538, 938
AsuHPI	GGTGA	1 cut(s)	868
BanI	GGYRCC	1 cut(s)	795
BanII	GRGCYC	1 cut(s)	863
Bbv12I	GWGCWC	1 cut(s)	863
BbvCI	CCTCAGC	1 cut(s)	791
BbvI	GCAGC	1 cut(s)	373
BccI	CCATC	1 cut(s)	227
BciT130I	CCWGG	1 cut(s)	58
BcnI	CCSGG	2 cut(s)	538, 938
BfaI	CTAG	2 cut(s)	779, 881
BfmI	CTRYAG	3 cut(s)	460, 518, 587
BfoI	RGCGCY	1 cut(s)	799
BfuAI	ACCTGC	1 cut(s)	313
BisI	GCNGC	2 cut(s)	387, 396
BlsI	GCNGC	2 cut(s)	388, 397
Bme1390I	CCNGG	3 cut(s)	58, 538, 938
BmeRI	GACNNNNNGTC	1 cut(s)	558
BmgT120I	GGNCC	1 cut(s)	578
BmiI	GGNNCC	3 cut(s)	55, 103, 797
BmrFI	CCNGG	3 cut(s)	58, 538, 938
BmsI	GCATC	2 cut(s)	167, 347
BpmI	CTGGAG	1 cut(s)	60
Bpu10I	CCTNAGC	1 cut(s)	791
BpuEI	CTTGAG	1 cut(s)	160
BpuMI	CCSGG	2 cut(s)	538, 938
BsaHI	GRCGYC	1 cut(s)	796
BsaJI	CCNNGG	3 cut(s)	57, 97, 117
BsaXI	ACNNNNNCTCC	2 cut(s)	33, 63
Bse1I	ACTGG	3 cut(s)	252, 482, 657
BseBI	CCWGG	1 cut(s)	58
BseDI	CCNNGG	3 cut(s)	57, 97, 117
BseGI	GGATG	3 cut(s)	127, 233, 436
BseMII	CTCAG	7 cut(s)	153, 276, 462, 501, 680, 782, 876
BseNI	ACTGG	3 cut(s)	252, 482, 657
BseXI	GCAGC	1 cut(s)	373
Bsh1236I	CGCG	1 cut(s)	398
BshFI	GGCC	3 cut(s)	395, 579, 664
BshNI	GGYRCC	1 cut(s)	795
BsiHKAI	GWGCWC	1 cut(s)	863
BsiSI	CCGG	4 cut(s)	267, 537, 725, 937
BsiWI	CGTACG	1 cut(s)	682
BslFI	GGGAC	3 cut(s)	240, 331, 739
BsmFI	GGGAC	3 cut(s)	240, 331, 739
BsnI	GGCC	3 cut(s)	395, 579, 664
Bsp1286I	GDGCHC	1 cut(s)	863
Bsp143I	GATC	2 cut(s)	544, 775
BspACI	CCGC	2 cut(s)	258, 396
BspANI	GGCC	3 cut(s)	395, 579, 664
BspCNI	CTCAG	7 cut(s)	154, 277, 463, 502, 679, 783, 875
BspFNI	CGCG	1 cut(s)	398
BspLI	GGNNCC	3 cut(s)	55, 103, 797
BspMAI	CTGCAG	3 cut(s)	464, 522, 591
BspMI	ACCTGC	1 cut(s)	313
BspPI	GGATC	1 cut(s)	783
BspT107I	GGYRCC	1 cut(s)	795
BsrBI	CCGCTC	1 cut(s)	260
BsrI	ACTGG	3 cut(s)	252, 482, 657
BssECI	CCNNGG	3 cut(s)	57, 97, 117
BssMI	GATC	2 cut(s)	544, 775
BssNI	GRCGYC	1 cut(s)	796
Bst2UI	CCWGG	1 cut(s)	58
Bst4CI	ACNGT	3 cut(s)	106, 556, 598
Bst6I	CTCTTC	1 cut(s)	213
BstACI	GRCGYC	1 cut(s)	796
BstDEI	CTNAG	7 cut(s)	162, 285, 471, 510, 666, 791, 862
BstDSI	CCRYGG	2 cut(s)	97, 117
BstF5I	GGATG	3 cut(s)	127, 233, 436
BstFNI	CGCG	1 cut(s)	398
BstH2I	RGCGCY	1 cut(s)	799
BstHHI	GCGC	1 cut(s)	798
BstKTI	GATC	2 cut(s)	547, 778
BstMBI	GATC	2 cut(s)	544, 775
BstMWI	GCNNNNNNNGC	4 cut(s)	51, 257, 392, 395
BstNI	CCWGG	1 cut(s)	58
BstNSI	RCATGY	1 cut(s)	754
BstSCI	CCNGG	3 cut(s)	56, 536, 936
BstSFI	CTRYAG	3 cut(s)	460, 518, 587
BstUI	CGCG	1 cut(s)	398
BstV1I	GCAGC	1 cut(s)	373
BstX2I	RGATCY	1 cut(s)	775
BstYI	RGATCY	1 cut(s)	775
BsuRI	GGCC	3 cut(s)	395, 579, 664
BtgI	CCRYGG	2 cut(s)	97, 117
BtsCI	GGATG	3 cut(s)	127, 233, 436
BtsI	GCAGTG	1 cut(s)	277
BtsIMutI	CAGTG	2 cut(s)	277, 650
BveI	ACCTGC	1 cut(s)	313
CaiI	CAGNNNCTG	2 cut(s)	38, 509
CfoI	GCGC	1 cut(s)	798
Cfr13I	GGNCC	1 cut(s)	578
Csp6I	GTAC	3 cut(s)	329, 609, 683
CviAII	CATG	2 cut(s)	245, 751
CviQI	GTAC	3 cut(s)	329, 609, 683
DdeI	CTNAG	7 cut(s)	162, 285, 471, 510, 666, 791, 862
DinI	GGCGCC	1 cut(s)	797
DpnI	GATC	2 cut(s)	546, 777
DpnII	GATC	2 cut(s)	544, 775
DriI	GACNNNNNGTC	1 cut(s)	558
EaeI	YGGCCR	1 cut(s)	393
Eam1104I	CTCTTC	1 cut(s)	213
Eam1105I	GACNNNNNGTC	1 cut(s)	558
EarI	CTCTTC	1 cut(s)	213
Ecl136II	GAGCTC	1 cut(s)	861
Eco147I	AGGCCT	1 cut(s)	664
Eco24I	GRGCYC	1 cut(s)	863
Eco53kI	GAGCTC	1 cut(s)	861
Eco57I	CTGAAG	4 cut(s)	435, 519, 717, 753
EcoICRI	GAGCTC	1 cut(s)	861
EcoRII	CCWGG	1 cut(s)	56
EcoT22I	ATGCAT	1 cut(s)	752
EcoT38I	GRGCYC	1 cut(s)	863
EgeI	GGCGCC	1 cut(s)	797
EheI	GGCGCC	1 cut(s)	797
FaeI	CATG	2 cut(s)	248, 754
FalI	AAGNNNNNCTT	6 cut(s)	173, 205, 327, 359, 690, 722
FaqI	GGGAC	3 cut(s)	240, 331, 739
FatI	CATG	2 cut(s)	244, 750
FauI	CCCGC	1 cut(s)	265
FauNDI	CATATG	2 cut(s)	715, 746
FblI	GTMKAC	1 cut(s)	593
Fnu4HI	GCNGC	2 cut(s)	387, 396
FokI	GGATG	3 cut(s)	134, 240, 443
FriOI	GRGCYC	1 cut(s)	863
Fsp4HI	GCNGC	2 cut(s)	387, 396
FspBI	CTAG	2 cut(s)	779, 881
GlaI	GCGC	1 cut(s)	797
GluI	GCNGC	2 cut(s)	387, 396
GsuI	CTGGAG	1 cut(s)	60
HaeII	RGCGCY	1 cut(s)	799
HaeIII	GGCC	3 cut(s)	395, 579, 664
HapII	CCGG	4 cut(s)	267, 537, 725, 937
HhaI	GCGC	1 cut(s)	798
Hin1I	GRCGYC	1 cut(s)	796
Hin1II	CATG	2 cut(s)	248, 754
Hin6I	GCGC	1 cut(s)	796
HinP1I	GCGC	1 cut(s)	796
HincII	GTYRAC	2 cut(s)	594, 679
HindII	GTYRAC	2 cut(s)	594, 679
HindIII	AAGCTT	2 cut(s)	146, 626
HinfI	GANTC	7 cut(s)	70, 203, 400, 434, 506, 647, 920
HpaII	CCGG	4 cut(s)	267, 537, 725, 937
HphI	GGTGA	1 cut(s)	868
Hpy166II	GTNNAC	3 cut(s)	97, 594, 679
Hpy188I	TCNGA	8 cut(s)	12, 110, 163, 448, 511, 669, 822, 865
Hpy188III	TCNNGA	2 cut(s)	284, 806
Hpy8I	GTNNAC	3 cut(s)	97, 594, 679
HpyAV	CCTTC	8 cut(s)	12, 218, 410, 622, 628, 632, 637, 728
HpyCH4III	ACNGT	3 cut(s)	106, 556, 598
HpyCH4IV	ACGT	2 cut(s)	407, 681
HpyCH4V	TGCA	8 cut(s)	90, 462, 520, 527, 589, 605, 750, 874
HpyF10VI	GCNNNNNNNGC	4 cut(s)	51, 257, 392, 395
HpyF3I	CTNAG	7 cut(s)	162, 285, 471, 510, 666, 791, 862
HpySE526I	ACGT	2 cut(s)	407, 681
Hsp92I	GRCGYC	1 cut(s)	796
Hsp92II	CATG	2 cut(s)	248, 754
HspAI	GCGC	1 cut(s)	796
KasI	GGCGCC	1 cut(s)	795
Kzo9I	GATC	2 cut(s)	544, 775
LmnI	GCTCC	2 cut(s)	59, 265
Lsp1109I	GCAGC	1 cut(s)	373
LweI	GCATC	2 cut(s)	167, 347
MaeI	CTAG	2 cut(s)	779, 881
MaeII	ACGT	2 cut(s)	407, 681
MaeIII	GTNAC	4 cut(s)	28, 550, 648, 890
MalI	GATC	2 cut(s)	546, 777
MbiI	CCGCTC	1 cut(s)	260
MboI	GATC	2 cut(s)	544, 775
MboII	GAAGA	6 cut(s)	65, 200, 610, 682, 750, 835
MfeI	CAATTG	1 cut(s)	219
MflI	RGATCY	1 cut(s)	775
MhlI	GDGCHC	1 cut(s)	863
MluCI	AATT	5 cut(s)	219, 297, 582, 814, 869
Mly113I	GGCGCC	1 cut(s)	796
MlyI	GAGTC	4 cut(s)	197, 443, 656, 914
MmeI	TCCRAC	1 cut(s)	866
MnlI	CCTC	8 cut(s)	35, 274, 388, 505, 675, 721, 786, 934
Mph1103I	ATGCAT	1 cut(s)	752
MroXI	GAANNNNTTC	2 cut(s)	176, 702
MseI	TTAA	6 cut(s)	66, 296, 312, 324, 333, 765
MslI	CAYNNNNRTG	1 cut(s)	749
MspI	CCGG	4 cut(s)	267, 537, 725, 937
MspR9I	CCNGG	3 cut(s)	58, 538, 938
MunI	CAATTG	1 cut(s)	219
MvaI	CCWGG	1 cut(s)	58
MvnI	CGCG	1 cut(s)	398
MwoI	GCNNNNNNNGC	4 cut(s)	51, 257, 392, 395
NarI	GGCGCC	1 cut(s)	796
NciI	CCSGG	2 cut(s)	538, 938
NdeI	CATATG	2 cut(s)	715, 746
NdeII	GATC	2 cut(s)	544, 775
NlaIII	CATG	2 cut(s)	248, 754
NlaIV	GGNNCC	3 cut(s)	55, 103, 797
NmuCI	GTSAC	2 cut(s)	550, 648
NsiI	ATGCAT	1 cut(s)	752
NspI	RCATGY	1 cut(s)	754
PceI	AGGCCT	1 cut(s)	664
PdmI	GAANNNNTTC	2 cut(s)	176, 702
PfeI	GAWTC	3 cut(s)	70, 400, 506
Pfl23II	CGTACG	1 cut(s)	682
PkrI	GCNGC	2 cut(s)	388, 397
PleI	GAGTC	4 cut(s)	197, 442, 655, 914
PluTI	GGCGCC	1 cut(s)	799
PpsI	GAGTC	4 cut(s)	197, 442, 655, 914
Psp124BI	GAGCTC	1 cut(s)	863
Psp6I	CCWGG	1 cut(s)	56
PspGI	CCWGG	1 cut(s)	56
PspLI	CGTACG	1 cut(s)	682
PspN4I	GGNNCC	3 cut(s)	55, 103, 797
PspPI	GGNCC	1 cut(s)	578
PstI	CTGCAG	3 cut(s)	464, 522, 591
PstNI	CAGNNNCTG	2 cut(s)	38, 509
PsuI	RGATCY	1 cut(s)	775
RsaI	GTAC	3 cut(s)	330, 610, 684
RsaNI	GTAC	3 cut(s)	329, 609, 683
RseI	CAYNNNNRTG	1 cut(s)	749
SacI	GAGCTC	1 cut(s)	863
SalI	GTCGAC	1 cut(s)	592
SaqAI	TTAA	6 cut(s)	66, 296, 312, 324, 333, 765
SatI	GCNGC	2 cut(s)	387, 396
Sau3AI	GATC	2 cut(s)	544, 775
Sau96I	GGNCC	1 cut(s)	578
SchI	GAGTC	4 cut(s)	197, 443, 656, 914
ScrFI	CCNGG	3 cut(s)	58, 538, 938
SduI	GDGCHC	1 cut(s)	863
SfaNI	GCATC	2 cut(s)	167, 347
SfcI	CTRYAG	3 cut(s)	460, 518, 587
SfoI	GGCGCC	1 cut(s)	797
SmiMI	CAYNNNNRTG	1 cut(s)	749
SmlI	CTYRAG	1 cut(s)	139
SmoI	CTYRAG	1 cut(s)	139
Sse9I	AATT	5 cut(s)	219, 297, 582, 814, 869
SseBI	AGGCCT	1 cut(s)	664
SsiI	CCGC	2 cut(s)	258, 396
SspDI	GGCGCC	1 cut(s)	795
SspMI	CTAG	2 cut(s)	779, 881
SstI	GAGCTC	1 cut(s)	863
StuI	AGGCCT	1 cut(s)	664
StyD4I	CCNGG	3 cut(s)	56, 536, 936
TaaI	ACNGT	3 cut(s)	106, 556, 598
TaiI	ACGT	2 cut(s)	410, 684
TaqI	TCGA	1 cut(s)	593
TasI	AATT	5 cut(s)	219, 297, 582, 814, 869
TatI	WGTACW	1 cut(s)	328
TauI	GCSGC	1 cut(s)	398
TfiI	GAWTC	3 cut(s)	70, 400, 506
Tru1I	TTAA	6 cut(s)	66, 296, 312, 324, 333, 765
Tru9I	TTAA	6 cut(s)	66, 296, 312, 324, 333, 765
TscAI	CASTG	2 cut(s)	277, 657
TseFI	GTSAC	2 cut(s)	550, 648
TseI	GCWGC	1 cut(s)	386
Tsp45I	GTSAC	2 cut(s)	550, 648
TspDTI	ATGAA	3 cut(s)	233, 604, 610
TspGWI	ACGGA	2 cut(s)	114, 134
TspRI	CASTG	2 cut(s)	277, 657
XceI	RCATGY	1 cut(s)	754
XmiI	GTMKAC	1 cut(s)	593
XmnI	GAANNNNTTC	2 cut(s)	176, 702
XspI	CTAG	2 cut(s)	779, 881
Zsp2I	ATGCAT	1 cut(s)	752

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.