Rorug07G0162300

Cinnamoyl-CoA reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0002886
Physical Location & Seq
Forward (+)
13022745 .. 13023113
369 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0162300.1

Sequence Viewer

Length: 369 bp
ATGGCTCTTGTCCAAGAACGCCGCAAGATCAATAATCTCCGTCTCCCCTTGTCTTTACCCTTCATCTCCGTCCACCACCGCCCACTTCTCTCTCTTCAAACCATTCCTCGCCCCGCTGGCACCACCACCACCTTCATCTCCTCCTCTACCGCACCCGCTTCGGCCTCAGACCTCGAGCGACTCCAAATCATGGGCCACGGAAGCGGCGGCACCGTCTACAAAGTTTTTCACAAGCCCATTTCCACCACTTACGCTCTCAAACTACTCAAGCCAGCTGCGGACTCCTCCTCCCATAACAACAGACTTCACAGTGAACTCGACATCCACGGCCGGCTCTCCCTACGTCGTCCACTGCCACGCCATCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Epimerase

Protein Analysis

122

Amino Acids

13.51

Weight (kDa)

11.41

Isoelectric Point (pI)

57.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 59 - 113 4.3e-06 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 119, 209
AccB7I CCANNNNNTGG 1 cut(s) 190
AccI GTMKAC 1 cut(s) 216
AciI CCGC 8 cut(s) 22, 79, 114, 150, 156, 204, 207, 278
AcoI YGGCCR 1 cut(s) 328
AfiI CCNNNNNNNGG 1 cut(s) 190
AgsI TTSAA 1 cut(s) 98
AloI GAACNNNNNNTCC 2 cut(s) 306, 338
AluBI AGCT 1 cut(s) 275
AluI AGCT 1 cut(s) 275
Alw26I GTCTC 1 cut(s) 47
Ama87I CYCGRG 1 cut(s) 173
AoxI GGCC 3 cut(s) 162, 193, 328
ApeKI GCWGC 1 cut(s) 275
AspS9I GGNCC 1 cut(s) 193
AvaI CYCGRG 1 cut(s) 173
BanI GGYRCC 2 cut(s) 119, 209
BbvI GCAGC 1 cut(s) 262
BceAI ACGGC 1 cut(s) 343
BcgI CGANNNNNNTGC 2 cut(s) 141, 175
BcoDI GTCTC 1 cut(s) 47
BglI GCCNNNNNGGC 1 cut(s) 117
BisI GCNGC 4 cut(s) 22, 205, 208, 276
BlsI GCNGC 4 cut(s) 23, 206, 209, 277
BmeT110I CYCGRG 1 cut(s) 173
BmgT120I GGNCC 1 cut(s) 193
BmiI GGNNCC 2 cut(s) 121, 211
BpuEI CTTGAG 1 cut(s) 251
BsaJI CCNNGG 2 cut(s) 196, 325
BsaXI ACNNNNNCTCC 2 cut(s) 272, 302
Bsc4I CCNNNNNNNGG 1 cut(s) 190
Bse118I RCCGGY 1 cut(s) 330
BseDI CCNNGG 2 cut(s) 196, 325
BseGI GGATG 1 cut(s) 321
BseLI CCNNNNNNNGG 1 cut(s) 190
BseMII CTCAG 1 cut(s) 180
BseRI GAGGAG 4 cut(s) 130, 133, 274, 277
BseX3I CGGCCG 1 cut(s) 328
BseXI GCAGC 1 cut(s) 262
Bsh1285I CGRYCG 1 cut(s) 331
BshFI GGCC 3 cut(s) 164, 195, 330
BshNI GGYRCC 2 cut(s) 119, 209
BsiEI CGRYCG 1 cut(s) 331
BsiHKCI CYCGRG 1 cut(s) 173
BsiSI CCGG 1 cut(s) 331
BslI CCNNNNNNNGG 1 cut(s) 190
BsmAI GTCTC 1 cut(s) 47
BsmBI CGTCTC 1 cut(s) 47
BsnI GGCC 3 cut(s) 164, 195, 330
BsoBI CYCGRG 1 cut(s) 173
Bsp143I GATC 1 cut(s) 27
BspACI CCGC 8 cut(s) 22, 79, 114, 150, 156, 204, 207, 278
BspANI GGCC 3 cut(s) 164, 195, 330
BspCNI CTCAG 1 cut(s) 179
BspLI GGNNCC 2 cut(s) 121, 211
BspT107I GGYRCC 2 cut(s) 119, 209
BsrFI RCCGGY 1 cut(s) 330
BssAI RCCGGY 1 cut(s) 330
BssECI CCNNGG 2 cut(s) 196, 325
BssMI GATC 1 cut(s) 27
Bst4CI ACNGT 2 cut(s) 214, 311
Bst6I CTCTTC 1 cut(s) 99
BstC8I GCNNGC 3 cut(s) 118, 273, 332
BstDEI CTNAG 1 cut(s) 166
BstDSI CCRYGG 2 cut(s) 196, 325
BstF5I GGATG 1 cut(s) 321
BstKTI GATC 1 cut(s) 30
BstMAI GTCTC 1 cut(s) 47
BstMBI GATC 1 cut(s) 27
BstMCI CGRYCG 1 cut(s) 331
BstMWI GCNNNNNNNGC 2 cut(s) 117, 201
BstV1I GCAGC 1 cut(s) 262
BstZI CGGCCG 1 cut(s) 328
BsuRI GGCC 3 cut(s) 164, 195, 330
BtgI CCRYGG 2 cut(s) 196, 325
BtsCI GGATG 1 cut(s) 321
BtsI GCAGTG 1 cut(s) 350
BtsIMutI CAGTG 2 cut(s) 316, 350
Cac8I GCNNGC 3 cut(s) 118, 273, 332
Cfr10I RCCGGY 1 cut(s) 330
Cfr13I GGNCC 1 cut(s) 193
CviAII CATG 1 cut(s) 190
CviJI RGCY 8 cut(s) 5, 164, 195, 235, 271, 275, 330, 334
CviKI_1 RGCY 8 cut(s) 5, 164, 195, 235, 271, 275, 330, 334
DdeI CTNAG 1 cut(s) 166
DpnI GATC 1 cut(s) 29
DpnII GATC 1 cut(s) 27
EaeI YGGCCR 1 cut(s) 328
EagI CGGCCG 1 cut(s) 328
Eam1104I CTCTTC 1 cut(s) 99
EarI CTCTTC 1 cut(s) 99
EclXI CGGCCG 1 cut(s) 328
Eco52I CGGCCG 1 cut(s) 328
Eco88I CYCGRG 1 cut(s) 173
Esp3I CGTCTC 1 cut(s) 47
FaeI CATG 1 cut(s) 193
FaiI YATR 2 cut(s) 191, 294
FatI CATG 1 cut(s) 189
FauI CCCGC 2 cut(s) 121, 163
FblI GTMKAC 1 cut(s) 216
Fnu4HI GCNGC 4 cut(s) 22, 205, 208, 276
FokI GGATG 1 cut(s) 308
Fsp4HI GCNGC 4 cut(s) 22, 205, 208, 276
GluI GCNGC 4 cut(s) 22, 205, 208, 276
HaeIII GGCC 3 cut(s) 164, 195, 330
HapII CCGG 1 cut(s) 331
Hin1II CATG 1 cut(s) 193
HinfI GANTC 2 cut(s) 180, 281
HpaII CCGG 1 cut(s) 331
Hpy166II GTNNAC 4 cut(s) 73, 217, 314, 350
Hpy188I TCNGA 1 cut(s) 169
Hpy8I GTNNAC 4 cut(s) 73, 217, 314, 350
Hpy99I CGWCG 1 cut(s) 348
HpyAV CCTTC 2 cut(s) 70, 142
HpyCH4III ACNGT 2 cut(s) 214, 311
HpyCH4IV ACGT 1 cut(s) 343
HpyF10VI GCNNNNNNNGC 2 cut(s) 117, 201
HpyF3I CTNAG 1 cut(s) 166
HpySE526I ACGT 1 cut(s) 343
Hsp92II CATG 1 cut(s) 193
KroI GCCGGC 1 cut(s) 330
KroNI GCCGGC 1 cut(s) 332
Kzo9I GATC 1 cut(s) 27
LpnPI CCDG 3 cut(s) 102, 285, 344
Lsp1109I GCAGC 1 cut(s) 262
MaeII ACGT 1 cut(s) 343
MalI GATC 1 cut(s) 29
MboI GATC 1 cut(s) 27
MboII GAAGA 1 cut(s) 86
MlyI GAGTC 2 cut(s) 174, 275
MnlI CCTC 7 cut(s) 117, 151, 154, 175, 182, 295, 298
MroNI GCCGGC 1 cut(s) 330
MspA1I CMGCKG 2 cut(s) 116, 275
MspI CCGG 1 cut(s) 331
MwoI GCNNNNNNNGC 2 cut(s) 117, 201
NaeI GCCGGC 1 cut(s) 332
NdeII GATC 1 cut(s) 27
NgoMIV GCCGGC 1 cut(s) 330
NlaIII CATG 1 cut(s) 193
NlaIV GGNNCC 2 cut(s) 121, 211
PaeR7I CTCGAG 1 cut(s) 173
PdiI GCCGGC 1 cut(s) 332
PflMI CCANNNNNTGG 1 cut(s) 190
PkrI GCNGC 4 cut(s) 23, 206, 209, 277
PleI GAGTC 2 cut(s) 174, 275
PpsI GAGTC 2 cut(s) 174, 275
PspN4I GGNNCC 2 cut(s) 121, 211
PspPI GGNCC 1 cut(s) 193
PspXI VCTCGAGB 1 cut(s) 173
PvuII CAGCTG 1 cut(s) 275
SatI GCNGC 4 cut(s) 22, 205, 208, 276
Sau3AI GATC 1 cut(s) 27
Sau96I GGNCC 1 cut(s) 193
SchI GAGTC 2 cut(s) 174, 275
SetI ASST 4 cut(s) 134, 174, 277, 346
Sfr274I CTCGAG 1 cut(s) 173
SlaI CTCGAG 1 cut(s) 173
SmlI CTYRAG 2 cut(s) 173, 266
SmoI CTYRAG 2 cut(s) 173, 266
SsiI CCGC 8 cut(s) 22, 79, 114, 150, 156, 204, 207, 278
TaaI ACNGT 2 cut(s) 214, 311
TaiI ACGT 1 cut(s) 346
TaqI TCGA 2 cut(s) 174, 318
TauI GCSGC 3 cut(s) 24, 207, 210
TscAI CASTG 2 cut(s) 316, 357
TseI GCWGC 1 cut(s) 275
TspDTI ATGAA 2 cut(s) 52, 124
TspGWI ACGGA 3 cut(s) 29, 58, 213
TspRI CASTG 2 cut(s) 316, 357
Van91I CCANNNNNTGG 1 cut(s) 190
XhoI CTCGAG 1 cut(s) 173
XmiI GTMKAC 1 cut(s) 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.