Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000125.1

Orthogroup ID

OG0002886

Physical Location & Seq

Genomic Coordinates Forward (+)

119077 .. 121910

Gene Structure 2834 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000125.1_g000024.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

atggtagttttgaatggaaggttctgtgttacaggggctggaggcttcgttggctcctgggtcgttaagcttcttctttccaagaactgcatagtccacggaaccgtcagagaacccacggatgacaagaactctcacttgagaaagcttgacaaggcatctgagaacctgaaacttccagttccctccggcagtgtgccaaatcctgaggcaagtgtgtctctcattatcctccaatattggtacttgcactggttaacatgctcaatcgtagagttaattgaacctgctgttaaggggacacttaatgtacttaaagcatctcttgaagcaaaagtcaagcgagttgtttatgtgtcctctgttgctgctgtggccatgaatcctacgtgggctgaaggtcaagtattggatgagtcttgctggtcagataaggaatactgcagaaatactgagaactggtattgcctttcaaaaactgaagcagaatctgaggctctgcagtttgcaaaaacaaccgggtttgatcttgtgactgtttgtcctacacttatacttggcccaattctgcagttgactgtaaatgcaagtaccttggtcctcatcaagcttttgaaggaaggaaaggagtcactggaaaacaggccccggaagatagttgatgtacgggattttgctgaagcacttcttatggcatatgagaagccggaggctgaaggaagatacatatgcatgtcccacaatgttaagaatagggatctagttgagaagctgaggcgcctttatccgaattacaattatccgaagaactttgttgaagtaggcgaagacagacaggtgagctcagagaaactgcaaaggctaggttggagttaccggtcattggatgatactctcattgactctgttgaaagctaccgggaggctggactattggattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Epimerase

Protein Analysis

313

Amino Acids

35.2

Weight (kDa)

6.18

Isoelectric Point (pI)

30.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002886)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33590 AT2G33600
fragaria_vesca	FvH4_5g26020 FvH4_5g26020
malus_domestica	MD06G1003200.v1.1 MD06G1003400.v1.1 MD06G1003500.v1.1
prunus_persica	Prupe.5G004800_v2.0.a1
pyrus_communis	pycom06g00330
rosa_chinensis	RchiOBHm_Chr7g0216761 RchiOBHm_Chr7g0216771
rosa_laevigata	RLG00000002535 RLG00000002539
rosa_multiflora	Rmu_sc0000125.1_g000024 Rmu_sc0004941.1_g000013 Rmu_sc0004941.1_g000018
rosa_roxburghii	Rroxscaffold_3G00242880 Rroxscaffold_3G00242920 Rroxscaffold_3G00242940
rosa_rugosa	Rorug07G0148400 Rorug07G0162200 Rorug07G0162200 Rorug07G0162300 Rorug07G0162400 Rorug07G0162800 Rorug07G0162900
rosa_samantha	Rh7AG302400 Rh7AG302600 Rh7AG302800 Rh7BG293900 Rh7BG294000 Rh7BG294200 Rh7CG321100 Rh7CG321400 Rh7DG303000
rosa_wichuraiana	Rw7G025680 Rw7G025700 Rw7G025720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	295
AccB1I	GGYRCC	1 cut(s)	777
AclWI	GGATC	1 cut(s)	765
AcoI	YGGCCR	1 cut(s)	375
AcuI	CTGAAG	4 cut(s)	417, 501, 699, 735
AcyI	GRCGYC	1 cut(s)	778
AfaI	GTAC	4 cut(s)	245, 312, 592, 666
AfiI	CCNNNNNNNGG	1 cut(s)	883
AgeI	ACCGGT	1 cut(s)	876
AgsI	TTSAA	7 cut(s)	13, 284, 329, 474, 616, 818, 911
AhdI	GACNNNNNGTC	1 cut(s)	540
AjnI	CCWGG	1 cut(s)	56
AluBI	AGCT	6 cut(s)	70, 148, 610, 772, 843, 915
AluI	AGCT	6 cut(s)	70, 148, 610, 772, 843, 915
Alw21I	GWGCWC	1 cut(s)	845
Alw26I	GTCTC	1 cut(s)	225
AlwI	GGATC	1 cut(s)	765
AlwNI	CAGNNNCTG	2 cut(s)	38, 491
AoxI	GGCC	3 cut(s)	375, 559, 644
ApeKI	GCWGC	1 cut(s)	368
AsiGI	ACCGGT	1 cut(s)	876
Asp700I	GAANNNNTTC	1 cut(s)	684
AspLEI	GCGC	1 cut(s)	780
AspS9I	GGNCC	3 cut(s)	560, 598, 645
AsuC2I	CCSGG	3 cut(s)	520, 649, 920
AsuHPI	GGTGA	1 cut(s)	850
AvaII	GGWCC	1 cut(s)	598
AxyI	CCTNAGG	1 cut(s)	207
BalI	TGGCCA	1 cut(s)	377
BanI	GGYRCC	1 cut(s)	777
BanII	GRGCYC	1 cut(s)	845
BbsI	GAAGAC	1 cut(s)	834
Bbv12I	GWGCWC	1 cut(s)	845
BbvCI	CCTCAGC	1 cut(s)	773
BbvI	GCAGC	1 cut(s)	355
BciT130I	CCWGG	1 cut(s)	58
BcnI	CCSGG	3 cut(s)	520, 649, 920
BcoDI	GTCTC	1 cut(s)	225
BfaI	CTAG	2 cut(s)	761, 863
BfmI	CTRYAG	3 cut(s)	442, 500, 569
BfoI	RGCGCY	1 cut(s)	781
BfuAI	ACCTGC	1 cut(s)	295
BisI	GCNGC	1 cut(s)	369
BlsI	GCNGC	1 cut(s)	370
Bme1390I	CCNGG	4 cut(s)	58, 520, 649, 920
Bme18I	GGWCC	1 cut(s)	598
BmeRI	GACNNNNNGTC	1 cut(s)	540
BmgT120I	GGNCC	3 cut(s)	560, 598, 645
BmiI	GGNNCC	4 cut(s)	55, 103, 647, 779
BmrFI	CCNGG	4 cut(s)	58, 520, 649, 920
BmsI	GCATC	2 cut(s)	167, 329
BpiI	GAAGAC	1 cut(s)	834
BpmI	CTGGAG	1 cut(s)	60
Bpu10I	CCTNAGC	1 cut(s)	773
BpuEI	CTTGAG	1 cut(s)	160
BpuMI	CCSGG	3 cut(s)	520, 649, 920
BsaAI	YACGTR	1 cut(s)	390
BsaHI	GRCGYC	1 cut(s)	778
BsaJI	CCNNGG	5 cut(s)	57, 97, 117, 594, 647
BsaWI	WCCGGW	1 cut(s)	876
BsaXI	ACNNNNNCTCC	2 cut(s)	33, 63
Bsc4I	CCNNNNNNNGG	1 cut(s)	883
Bse118I	RCCGGY	1 cut(s)	876
Bse1I	ACTGG	4 cut(s)	179, 257, 464, 639
Bse21I	CCTNAGG	1 cut(s)	207
BseBI	CCWGG	1 cut(s)	58
BseDI	CCNNGG	5 cut(s)	57, 97, 117, 594, 647
BseGI	GGATG	3 cut(s)	127, 418, 892
BseLI	CCNNNNNNNGG	1 cut(s)	883
BseMII	CTCAG	6 cut(s)	153, 198, 444, 483, 764, 858
BseNI	ACTGG	4 cut(s)	179, 257, 464, 639
BseXI	GCAGC	1 cut(s)	355
BshFI	GGCC	3 cut(s)	377, 561, 646
BshNI	GGYRCC	1 cut(s)	777
BshTI	ACCGGT	1 cut(s)	876
BsiHKAI	GWGCWC	1 cut(s)	845
BsiSI	CCGG	6 cut(s)	189, 519, 649, 707, 877, 919
BslFI	GGGAC	2 cut(s)	313, 721
BslI	CCNNNNNNNGG	1 cut(s)	883
BsmAI	GTCTC	1 cut(s)	225
BsmFI	GGGAC	2 cut(s)	313, 721
BsnI	GGCC	3 cut(s)	377, 561, 646
Bsp1286I	GDGCHC	1 cut(s)	845
Bsp143I	GATC	2 cut(s)	526, 757
BspANI	GGCC	3 cut(s)	377, 561, 646
BspCNI	CTCAG	6 cut(s)	154, 199, 445, 484, 765, 857
BspLI	GGNNCC	4 cut(s)	55, 103, 647, 779
BspMAI	CTGCAG	3 cut(s)	446, 504, 573
BspMI	ACCTGC	1 cut(s)	295
BspPI	GGATC	1 cut(s)	765
BspT107I	GGYRCC	1 cut(s)	777
BsrFI	RCCGGY	1 cut(s)	876
BsrI	ACTGG	4 cut(s)	179, 257, 464, 639
BssAI	RCCGGY	1 cut(s)	876
BssECI	CCNNGG	5 cut(s)	57, 97, 117, 594, 647
BssMI	GATC	2 cut(s)	526, 757
BssNI	GRCGYC	1 cut(s)	778
BssT1I	CCWWGG	1 cut(s)	594
Bst2UI	CCWGG	1 cut(s)	58
Bst4CI	ACNGT	3 cut(s)	106, 538, 580
BstACI	GRCGYC	1 cut(s)	778
BstBAI	YACGTR	1 cut(s)	390
BstDEI	CTNAG	6 cut(s)	162, 207, 453, 492, 773, 844
BstDSI	CCRYGG	2 cut(s)	97, 117
BstF5I	GGATG	3 cut(s)	127, 418, 892
BstH2I	RGCGCY	1 cut(s)	781
BstHHI	GCGC	1 cut(s)	780
BstKTI	GATC	2 cut(s)	529, 760
BstMAI	GTCTC	1 cut(s)	225
BstMBI	GATC	2 cut(s)	526, 757
BstMWI	GCNNNNNNNGC	2 cut(s)	51, 374
BstNI	CCWGG	1 cut(s)	58
BstNSI	RCATGY	2 cut(s)	264, 736
BstSCI	CCNGG	4 cut(s)	56, 518, 647, 918
BstSFI	CTRYAG	3 cut(s)	442, 500, 569
BstV1I	GCAGC	1 cut(s)	355
BstV2I	GAAGAC	1 cut(s)	834
BstX2I	RGATCY	1 cut(s)	757
BstYI	RGATCY	1 cut(s)	757
Bsu36I	CCTNAGG	1 cut(s)	207
BsuRI	GGCC	3 cut(s)	377, 561, 646
BtgI	CCRYGG	2 cut(s)	97, 117
BtsCI	GGATG	3 cut(s)	127, 418, 892
BtsI	GCAGTG	1 cut(s)	199
BtsIMutI	CAGTG	3 cut(s)	199, 250, 632
BveI	ACCTGC	1 cut(s)	295
CaiI	CAGNNNCTG	2 cut(s)	38, 491
CfoI	GCGC	1 cut(s)	780
Cfr10I	RCCGGY	1 cut(s)	876
Cfr13I	GGNCC	3 cut(s)	560, 598, 645
Csp6I	GTAC	4 cut(s)	244, 311, 591, 665
CspAI	ACCGGT	1 cut(s)	876
CviAII	CATG	3 cut(s)	261, 379, 733
CviQI	GTAC	4 cut(s)	244, 311, 591, 665
DdeI	CTNAG	6 cut(s)	162, 207, 453, 492, 773, 844
DinI	GGCGCC	1 cut(s)	779
DpnI	GATC	2 cut(s)	528, 759
DpnII	GATC	2 cut(s)	526, 757
DriI	GACNNNNNGTC	1 cut(s)	540
EaeI	YGGCCR	1 cut(s)	375
Eam1105I	GACNNNNNGTC	1 cut(s)	540
Ecl136II	GAGCTC	1 cut(s)	843
Eco130I	CCWWGG	1 cut(s)	594
Eco24I	GRGCYC	1 cut(s)	845
Eco47I	GGWCC	1 cut(s)	598
Eco53kI	GAGCTC	1 cut(s)	843
Eco57I	CTGAAG	4 cut(s)	417, 501, 699, 735
Eco81I	CCTNAGG	1 cut(s)	207
EcoICRI	GAGCTC	1 cut(s)	843
EcoO109I	RGGNCCY	1 cut(s)	645
EcoRII	CCWGG	1 cut(s)	56
EcoT14I	CCWWGG	1 cut(s)	594
EcoT22I	ATGCAT	1 cut(s)	734
EcoT38I	GRGCYC	1 cut(s)	845
EgeI	GGCGCC	1 cut(s)	779
EheI	GGCGCC	1 cut(s)	779
ErhI	CCWWGG	1 cut(s)	594
FaeI	CATG	3 cut(s)	264, 382, 736
FalI	AAGNNNNNCTT	4 cut(s)	309, 341, 672, 704
FaqI	GGGAC	2 cut(s)	313, 721
FatI	CATG	3 cut(s)	260, 378, 732
FauNDI	CATATG	2 cut(s)	697, 728
Fnu4HI	GCNGC	1 cut(s)	369
FokI	GGATG	3 cut(s)	134, 425, 899
FriOI	GRGCYC	1 cut(s)	845
Fsp4HI	GCNGC	1 cut(s)	369
FspBI	CTAG	2 cut(s)	761, 863
GlaI	GCGC	1 cut(s)	779
GluI	GCNGC	1 cut(s)	369
GsuI	CTGGAG	1 cut(s)	60
HaeII	RGCGCY	1 cut(s)	781
HaeIII	GGCC	3 cut(s)	377, 561, 646
HapII	CCGG	6 cut(s)	189, 519, 649, 707, 877, 919
HhaI	GCGC	1 cut(s)	780
Hin1I	GRCGYC	1 cut(s)	778
Hin1II	CATG	3 cut(s)	264, 382, 736
Hin6I	GCGC	1 cut(s)	778
HinP1I	GCGC	1 cut(s)	778
HincII	GTYRAC	2 cut(s)	258, 576
HindII	GTYRAC	2 cut(s)	258, 576
HindIII	AAGCTT	3 cut(s)	68, 146, 608
HinfI	GANTC	5 cut(s)	382, 416, 488, 629, 902
HpaI	GTTAAC	1 cut(s)	258
HpaII	CCGG	6 cut(s)	189, 519, 649, 707, 877, 919
HphI	GGTGA	1 cut(s)	850
Hpy166II	GTNNAC	3 cut(s)	97, 258, 576
Hpy188I	TCNGA	7 cut(s)	110, 163, 430, 493, 789, 804, 847
Hpy188III	TCNNGA	2 cut(s)	206, 326
Hpy8I	GTNNAC	3 cut(s)	97, 258, 576
HpyAV	CCTTC	5 cut(s)	12, 392, 610, 614, 710
HpyCH4III	ACNGT	3 cut(s)	106, 538, 580
HpyCH4IV	ACGT	1 cut(s)	389
HpyCH4V	TGCA	9 cut(s)	90, 250, 444, 502, 509, 571, 587, 732, 856
HpyF10VI	GCNNNNNNNGC	2 cut(s)	51, 374
HpyF3I	CTNAG	6 cut(s)	162, 207, 453, 492, 773, 844
HpySE526I	ACGT	1 cut(s)	389
Hsp92I	GRCGYC	1 cut(s)	778
Hsp92II	CATG	3 cut(s)	264, 382, 736
HspAI	GCGC	1 cut(s)	778
KasI	GGCGCC	1 cut(s)	777
KspAI	GTTAAC	1 cut(s)	258
Kzo9I	GATC	2 cut(s)	526, 757
LmnI	GCTCC	1 cut(s)	59
Lsp1109I	GCAGC	1 cut(s)	355
LweI	GCATC	2 cut(s)	167, 329
MaeI	CTAG	2 cut(s)	761, 863
MaeII	ACGT	1 cut(s)	389
MaeIII	GTNAC	4 cut(s)	28, 532, 630, 872
MalI	GATC	2 cut(s)	528, 759
MboI	GATC	2 cut(s)	526, 757
MboII	GAAGA	5 cut(s)	65, 664, 732, 817, 839
MflI	RGATCY	1 cut(s)	757
MhlI	GDGCHC	1 cut(s)	845
MlsI	TGGCCA	1 cut(s)	377
MluCI	AATT	4 cut(s)	279, 564, 790, 796
MluNI	TGGCCA	1 cut(s)	377
Mly113I	GGCGCC	1 cut(s)	778
MlyI	GAGTC	3 cut(s)	425, 638, 896
MmeI	TCCRAC	1 cut(s)	848
Mox20I	TGGCCA	1 cut(s)	377
Mph1103I	ATGCAT	1 cut(s)	734
MroXI	GAANNNNTTC	1 cut(s)	684
MscI	TGGCCA	1 cut(s)	377
MseI	TTAA	7 cut(s)	66, 257, 278, 294, 306, 315, 747
MslI	CAYNNNNRTG	1 cut(s)	731
Msp20I	TGGCCA	1 cut(s)	377
MspI	CCGG	6 cut(s)	189, 519, 649, 707, 877, 919
MspR9I	CCNGG	4 cut(s)	58, 520, 649, 920
MvaI	CCWGG	1 cut(s)	58
MwoI	GCNNNNNNNGC	2 cut(s)	51, 374
NarI	GGCGCC	1 cut(s)	778
NciI	CCSGG	3 cut(s)	520, 649, 920
NdeI	CATATG	2 cut(s)	697, 728
NdeII	GATC	2 cut(s)	526, 757
NlaIII	CATG	3 cut(s)	264, 382, 736
NlaIV	GGNNCC	4 cut(s)	55, 103, 647, 779
NmuCI	GTSAC	2 cut(s)	532, 630
NsiI	ATGCAT	1 cut(s)	734
NspI	RCATGY	2 cut(s)	264, 736
PdmI	GAANNNNTTC	1 cut(s)	684
PfeI	GAWTC	2 cut(s)	382, 488
PinAI	ACCGGT	1 cut(s)	876
PkrI	GCNGC	1 cut(s)	370
PleI	GAGTC	3 cut(s)	424, 637, 896
PluTI	GGCGCC	1 cut(s)	781
PpsI	GAGTC	3 cut(s)	424, 637, 896
Ppu21I	YACGTR	1 cut(s)	390
Psp124BI	GAGCTC	1 cut(s)	845
Psp6I	CCWGG	1 cut(s)	56
PspGI	CCWGG	1 cut(s)	56
PspN4I	GGNNCC	4 cut(s)	55, 103, 647, 779
PspPI	GGNCC	3 cut(s)	560, 598, 645
PstI	CTGCAG	3 cut(s)	446, 504, 573
PstNI	CAGNNNCTG	2 cut(s)	38, 491
PsuI	RGATCY	1 cut(s)	757
RsaI	GTAC	4 cut(s)	245, 312, 592, 666
RsaNI	GTAC	4 cut(s)	244, 311, 591, 665
RseI	CAYNNNNRTG	1 cut(s)	731
SacI	GAGCTC	1 cut(s)	845
SaqAI	TTAA	7 cut(s)	66, 257, 278, 294, 306, 315, 747
SatI	GCNGC	1 cut(s)	369
Sau3AI	GATC	2 cut(s)	526, 757
Sau96I	GGNCC	3 cut(s)	560, 598, 645
SchI	GAGTC	3 cut(s)	425, 638, 896
ScrFI	CCNGG	4 cut(s)	58, 520, 649, 920
SduI	GDGCHC	1 cut(s)	845
SfaNI	GCATC	2 cut(s)	167, 329
SfcI	CTRYAG	3 cut(s)	442, 500, 569
SfoI	GGCGCC	1 cut(s)	779
SinI	GGWCC	1 cut(s)	598
SmiMI	CAYNNNNRTG	1 cut(s)	731
SmlI	CTYRAG	1 cut(s)	139
SmoI	CTYRAG	1 cut(s)	139
Sse9I	AATT	4 cut(s)	279, 564, 790, 796
SspDI	GGCGCC	1 cut(s)	777
SspI	AATATT	1 cut(s)	239
SspMI	CTAG	2 cut(s)	761, 863
SstI	GAGCTC	1 cut(s)	845
StyD4I	CCNGG	4 cut(s)	56, 518, 647, 918
StyI	CCWWGG	1 cut(s)	594
TaaI	ACNGT	3 cut(s)	106, 538, 580
TaiI	ACGT	1 cut(s)	392
TasI	AATT	4 cut(s)	279, 564, 790, 796
TatI	WGTACW	1 cut(s)	310
TfiI	GAWTC	2 cut(s)	382, 488
Tru1I	TTAA	7 cut(s)	66, 257, 278, 294, 306, 315, 747
Tru9I	TTAA	7 cut(s)	66, 257, 278, 294, 306, 315, 747
TscAI	CASTG	3 cut(s)	199, 257, 639
TseFI	GTSAC	2 cut(s)	532, 630
TseI	GCWGC	1 cut(s)	368
Tsp45I	GTSAC	2 cut(s)	532, 630
TspDTI	ATGAA	1 cut(s)	395
TspGWI	ACGGA	2 cut(s)	114, 134
TspRI	CASTG	3 cut(s)	199, 257, 639
VpaK11BI	GGWCC	1 cut(s)	598
XceI	RCATGY	2 cut(s)	264, 736
XmnI	GAANNNNTTC	1 cut(s)	684
XspI	CTAG	2 cut(s)	761, 863
Zsp2I	ATGCAT	1 cut(s)	734

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.