Rh7AG302800

Polysaccharide biosynthesis protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0002886
Physical Location & Seq
Forward (+)
33331926 .. 33341980
10055 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG302800.1

Sequence Viewer

Length: 684 bp
ATGGCAGTTCAGAATGGAAGGTTCTGTGTAACAGGGGCTGGAGGCTTCGTTGGCTCCTGGGTCGTTAAGCTTCTTCTTTCCAAGAACTGCATAGTCCACGGAACCGTCAGAGAACCCAAAGGAAAGGAGTCACTGGAAAACAGGCCCCGGCAGATAGTTGACGTACGGGATTTAGCCGAAGCACTTCTTATGGCATATGAGAAGCCGGAGGCTGAAGGAAGATACATATGCAAGTCCCACAATGTTAAGAATGGGGATCTAGTTGAGAAGCTGAGGCGCCTTTATCCTAATTACAATTACCCGAAGAACTTTGTTGAAGTAGGCGAATACAGAAAGACTGTGAAGGAGAGAGAAACACTCTGTGTTACAGGTGCTGGAGGCTTTGTGGCATCTTGGCTCGTCAACTTGCTGCTTTCTCACGGATTCCAAGTTCATGGCACTGTGAGAGACCCATACTTGATGGATTATGGCTCCCTCCGCACGACTATTGAAGGGTGCTGCGGAGTCTTTCATGTTGCCAGTCCAGCTCCCTCCAACACTGTGCAAAACCCGAAGGTAGAGGTGATTGAACCTGCTATAAAGAAGACACTTAATGTACTTAAAGTCAAGGCTAGCGAGTTGTTTTTGTGTCTTCTATTGCCGCTGTGTCCTTCAATCCTAGGTGGGCAGATGGTCAAGTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
Epimerase

Protein Analysis

227

Amino Acids

25.12

Weight (kDa)

9.07

Isoelectric Point (pI)

21.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 580
AccB1I GGYRCC 1 cut(s) 276
AciI CCGC 3 cut(s) 478, 501, 641
AclWI GGATC 1 cut(s) 264
AcuI CTGAAG 1 cut(s) 234
AcyI GRCGYC 1 cut(s) 277
AdeI CACNNNGTG 1 cut(s) 362
AfaI GTAC 2 cut(s) 165, 597
AgsI TTSAA 4 cut(s) 317, 491, 569, 654
AjnI CCWGG 1 cut(s) 56
AloI GAACNNNNNNTCC 2 cut(s) 414, 446
AluBI AGCT 3 cut(s) 70, 271, 527
AluI AGCT 3 cut(s) 70, 271, 527
Alw26I GTCTC 1 cut(s) 441
AlwI GGATC 1 cut(s) 264
AlwNI CAGNNNCTG 2 cut(s) 38, 374
AoxI GGCC 1 cut(s) 143
ApeKI GCWGC 2 cut(s) 409, 498
Asp700I GAANNNNTTC 1 cut(s) 183
AspA2I CCTAGG 1 cut(s) 658
AspLEI GCGC 1 cut(s) 279
AspS9I GGNCC 1 cut(s) 144
AsuC2I CCSGG 1 cut(s) 148
AsuHPI GGTGA 1 cut(s) 574
AsuNHI GCTAGC 1 cut(s) 611
AvrII CCTAGG 1 cut(s) 658
BanI GGYRCC 1 cut(s) 276
BbsI GAAGAC 2 cut(s) 590, 623
BbvCI CCTCAGC 1 cut(s) 272
BbvI GCAGC 2 cut(s) 396, 485
BccI CCATC 2 cut(s) 454, 664
BciT130I CCWGG 1 cut(s) 58
BcnI CCSGG 1 cut(s) 148
BcoDI GTCTC 1 cut(s) 441
BfaI CTAG 3 cut(s) 260, 612, 659
BfoI RGCGCY 1 cut(s) 280
BfuAI ACCTGC 1 cut(s) 580
BisI GCNGC 3 cut(s) 410, 499, 641
BlnI CCTAGG 1 cut(s) 658
BlsI GCNGC 3 cut(s) 411, 500, 642
Bme1390I CCNGG 2 cut(s) 58, 148
BmgT120I GGNCC 1 cut(s) 144
BmiI GGNNCC 5 cut(s) 55, 103, 146, 278, 472
BmrFI CCNGG 2 cut(s) 58, 148
BmsI GCATC 1 cut(s) 398
BmtI GCTAGC 1 cut(s) 615
BpiI GAAGAC 2 cut(s) 590, 623
BplI GAGNNNNNCTC 2 cut(s) 342, 374
BpmI CTGGAG 2 cut(s) 60, 396
Bpu10I CCTNAGC 1 cut(s) 272
BpuMI CCSGG 1 cut(s) 148
BsaHI GRCGYC 1 cut(s) 277
BsaI GGTCTC 1 cut(s) 441
BsaJI CCNNGG 4 cut(s) 57, 97, 146, 658
BsaXI ACNNNNNCTCC 4 cut(s) 33, 63, 369, 399
Bse1I ACTGG 2 cut(s) 138, 519
BseBI CCWGG 1 cut(s) 58
BseDI CCNNGG 4 cut(s) 57, 97, 146, 658
BseMII CTCAG 1 cut(s) 263
BseNI ACTGG 2 cut(s) 138, 519
BseXI GCAGC 2 cut(s) 396, 485
BshFI GGCC 1 cut(s) 145
BshNI GGYRCC 1 cut(s) 276
BsiSI CCGG 2 cut(s) 148, 206
BsiWI CGTACG 1 cut(s) 163
BslFI GGGAC 1 cut(s) 220
BsmAI GTCTC 1 cut(s) 441
BsmFI GGGAC 1 cut(s) 220
BsnI GGCC 1 cut(s) 145
Bso31I GGTCTC 1 cut(s) 441
Bsp143I GATC 1 cut(s) 256
BspACI CCGC 3 cut(s) 478, 501, 641
BspANI GGCC 1 cut(s) 145
BspCNI CTCAG 1 cut(s) 264
BspLI GGNNCC 5 cut(s) 55, 103, 146, 278, 472
BspMI ACCTGC 1 cut(s) 580
BspOI GCTAGC 1 cut(s) 615
BspPI GGATC 1 cut(s) 264
BspT107I GGYRCC 1 cut(s) 276
BspTNI GGTCTC 1 cut(s) 441
BsrI ACTGG 2 cut(s) 138, 519
BssECI CCNNGG 4 cut(s) 57, 97, 146, 658
BssMI GATC 1 cut(s) 256
BssNI GRCGYC 1 cut(s) 277
BssT1I CCWWGG 1 cut(s) 658
Bst2UI CCWGG 1 cut(s) 58
Bst4CI ACNGT 4 cut(s) 106, 340, 442, 541
BstACI GRCGYC 1 cut(s) 277
BstC8I GCNNGC 1 cut(s) 613
BstDEI CTNAG 1 cut(s) 272
BstDSI CCRYGG 1 cut(s) 97
BstH2I RGCGCY 1 cut(s) 280
BstHHI GCGC 1 cut(s) 279
BstKTI GATC 1 cut(s) 259
BstMAI GTCTC 1 cut(s) 441
BstMBI GATC 1 cut(s) 256
BstMWI GCNNNNNNNGC 3 cut(s) 51, 477, 524
BstNI CCWGG 1 cut(s) 58
BstSCI CCNGG 2 cut(s) 56, 146
BstV1I GCAGC 2 cut(s) 396, 485
BstV2I GAAGAC 2 cut(s) 590, 623
BstX2I RGATCY 1 cut(s) 256
BstXI CCANNNNNNTGG 1 cut(s) 434
BstYI RGATCY 1 cut(s) 256
BsuRI GGCC 1 cut(s) 145
BtgI CCRYGG 1 cut(s) 97
BtsIMutI CAGTG 3 cut(s) 131, 438, 537
BveI ACCTGC 1 cut(s) 580
Cac8I GCNNGC 1 cut(s) 613
CaiI CAGNNNCTG 2 cut(s) 38, 374
CfoI GCGC 1 cut(s) 279
Cfr13I GGNCC 1 cut(s) 144
Csp6I GTAC 2 cut(s) 164, 596
CviAII CATG 2 cut(s) 434, 512
CviQI GTAC 2 cut(s) 164, 596
DdeI CTNAG 1 cut(s) 272
DinI GGCGCC 1 cut(s) 278
DpnI GATC 1 cut(s) 258
DpnII GATC 1 cut(s) 256
DraIII CACNNNGTG 1 cut(s) 362
Eco130I CCWWGG 1 cut(s) 658
Eco31I GGTCTC 1 cut(s) 441
Eco57I CTGAAG 1 cut(s) 234
EcoO109I RGGNCCY 1 cut(s) 144
EcoRII CCWGG 1 cut(s) 56
EcoT14I CCWWGG 1 cut(s) 658
EgeI GGCGCC 1 cut(s) 278
EheI GGCGCC 1 cut(s) 278
ErhI CCWWGG 1 cut(s) 658
FaeI CATG 2 cut(s) 437, 515
FalI AAGNNNNNCTT 2 cut(s) 171, 203
FaqI GGGAC 1 cut(s) 220
FatI CATG 2 cut(s) 433, 511
FauNDI CATATG 2 cut(s) 196, 227
Fnu4HI GCNGC 3 cut(s) 410, 499, 641
Fsp4HI GCNGC 3 cut(s) 410, 499, 641
FspBI CTAG 3 cut(s) 260, 612, 659
GlaI GCGC 1 cut(s) 278
GluI GCNGC 3 cut(s) 410, 499, 641
GsuI CTGGAG 2 cut(s) 60, 396
HaeII RGCGCY 1 cut(s) 280
HaeIII GGCC 1 cut(s) 145
HapII CCGG 2 cut(s) 148, 206
HhaI GCGC 1 cut(s) 279
Hin1I GRCGYC 1 cut(s) 277
Hin1II CATG 2 cut(s) 437, 515
Hin6I GCGC 1 cut(s) 277
HinP1I GCGC 1 cut(s) 277
HincII GTYRAC 2 cut(s) 160, 403
HindII GTYRAC 2 cut(s) 160, 403
HindIII AAGCTT 1 cut(s) 68
HinfI GANTC 3 cut(s) 128, 423, 504
HpaII CCGG 2 cut(s) 148, 206
HphI GGTGA 1 cut(s) 574
Hpy166II GTNNAC 3 cut(s) 97, 160, 403
Hpy188I TCNGA 2 cut(s) 12, 110
Hpy8I GTNNAC 3 cut(s) 97, 160, 403
HpyAV CCTTC 6 cut(s) 12, 209, 337, 485, 547, 660
HpyCH4III ACNGT 4 cut(s) 106, 340, 442, 541
HpyCH4IV ACGT 1 cut(s) 162
HpyCH4V TGCA 3 cut(s) 90, 231, 544
HpyF10VI GCNNNNNNNGC 3 cut(s) 51, 477, 524
HpyF3I CTNAG 1 cut(s) 272
HpySE526I ACGT 1 cut(s) 162
Hsp92I GRCGYC 1 cut(s) 277
Hsp92II CATG 2 cut(s) 437, 515
HspAI GCGC 1 cut(s) 277
KasI GGCGCC 1 cut(s) 276
Kzo9I GATC 1 cut(s) 256
LmnI GCTCC 3 cut(s) 59, 476, 532
Lsp1109I GCAGC 2 cut(s) 396, 485
LweI GCATC 1 cut(s) 398
MaeI CTAG 3 cut(s) 260, 612, 659
MaeII ACGT 1 cut(s) 162
MaeIII GTNAC 3 cut(s) 28, 129, 364
MalI GATC 1 cut(s) 258
MboI GATC 1 cut(s) 256
MboII GAAGA 5 cut(s) 65, 231, 316, 595, 623
MflI RGATCY 1 cut(s) 256
MluCI AATT 2 cut(s) 289, 295
Mly113I GGCGCC 1 cut(s) 277
MlyI GAGTC 2 cut(s) 137, 513
MmeI TCCRAC 1 cut(s) 558
MnlI CCTC 7 cut(s) 35, 202, 267, 371, 485, 541, 553
MroXI GAANNNNTTC 1 cut(s) 183
MseI TTAA 4 cut(s) 66, 246, 591, 600
MspA1I CMGCKG 1 cut(s) 643
MspI CCGG 2 cut(s) 148, 206
MspR9I CCNGG 2 cut(s) 58, 148
MvaI CCWGG 1 cut(s) 58
MwoI GCNNNNNNNGC 3 cut(s) 51, 477, 524
NarI GGCGCC 1 cut(s) 277
NciI CCSGG 1 cut(s) 148
NdeI CATATG 2 cut(s) 196, 227
NdeII GATC 1 cut(s) 256
NheI GCTAGC 1 cut(s) 611
NlaIII CATG 2 cut(s) 437, 515
NlaIV GGNNCC 5 cut(s) 55, 103, 146, 278, 472
NmuCI GTSAC 1 cut(s) 129
PdmI GAANNNNTTC 1 cut(s) 183
PfeI GAWTC 1 cut(s) 423
Pfl23II CGTACG 1 cut(s) 163
PkrI GCNGC 3 cut(s) 411, 500, 642
PleI GAGTC 2 cut(s) 136, 512
PluTI GGCGCC 1 cut(s) 280
PpsI GAGTC 2 cut(s) 136, 512
Psp6I CCWGG 1 cut(s) 56
PspGI CCWGG 1 cut(s) 56
PspLI CGTACG 1 cut(s) 163
PspN4I GGNNCC 5 cut(s) 55, 103, 146, 278, 472
PspPI GGNCC 1 cut(s) 144
PstNI CAGNNNCTG 2 cut(s) 38, 374
PsuI RGATCY 1 cut(s) 256
RsaI GTAC 2 cut(s) 165, 597
RsaNI GTAC 2 cut(s) 164, 596
SaqAI TTAA 4 cut(s) 66, 246, 591, 600
SatI GCNGC 3 cut(s) 410, 499, 641
Sau3AI GATC 1 cut(s) 256
Sau96I GGNCC 1 cut(s) 144
SchI GAGTC 2 cut(s) 137, 513
ScrFI CCNGG 2 cut(s) 58, 148
SfaNI GCATC 1 cut(s) 398
SfoI GGCGCC 1 cut(s) 278
Sse9I AATT 2 cut(s) 289, 295
SsiI CCGC 3 cut(s) 478, 501, 641
SspDI GGCGCC 1 cut(s) 276
SspMI CTAG 3 cut(s) 260, 612, 659
StyD4I CCNGG 2 cut(s) 56, 146
StyI CCWWGG 1 cut(s) 658
TaaI ACNGT 4 cut(s) 106, 340, 442, 541
TaiI ACGT 1 cut(s) 165
TasI AATT 2 cut(s) 289, 295
TatI WGTACW 1 cut(s) 595
TauI GCSGC 1 cut(s) 643
TfiI GAWTC 1 cut(s) 423
Tru1I TTAA 4 cut(s) 66, 246, 591, 600
Tru9I TTAA 4 cut(s) 66, 246, 591, 600
TscAI CASTG 3 cut(s) 138, 445, 544
TseFI GTSAC 1 cut(s) 129
TseI GCWGC 2 cut(s) 409, 498
Tsp45I GTSAC 1 cut(s) 129
TspDTI ATGAA 2 cut(s) 422, 500
TspGWI ACGGA 2 cut(s) 114, 435
TspRI CASTG 3 cut(s) 138, 445, 544
XmaJI CCTAGG 1 cut(s) 658
XmnI GAANNNNTTC 1 cut(s) 183
XspI CTAG 3 cut(s) 260, 612, 659
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.