RLG00000002535

Cinnamoyl-CoA reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0002886
Physical Location & Seq
Forward (+)
35927518 .. 35932537
5020 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002535

Sequence Viewer

Length: 657 bp
ATGCAGTACTGTGTGTCCAGTGCTATTCACTCTCACGTTGTGAGGGTGAGGTCTCGCACCAACAGGAGGAACCGTGAGCCACCACAGAGATTCATCAGACGCAGGGATGATGCCCCAAGGCCTGGAGCACCTGGGCACGGAACCCGACCTGCTGGAGCTGGTGTTCCTGCTCCGGATGACAAGAACTCTCACTTGAGAAAGCTTGACAAGGCATCTGAGAACCTGAAACTATTCAAAGCGGACTTATTGGATTATGACTCCCTTCGCTCGGCAATTGAAGGATGTGATGGAGTATTTCATGTTGCCAGTCCCGCTCCCTCCGGCAGTGTTGCAAATCCTGAGGAGTCACTGGAAAACAAGCCTCAGATGATAGTTGATGTACGGGATTTAGCTGAAGCACTTCTTATGGCATATGAGAAGCCGGAGGCTGAAGGAAGATACATATGCATGTCCCACAATATTAAGAATGGGGATCTAGTTGAGAAGCTGAGGCGCCTTTATCCTAATTACAATTATCCAAAGAACTTTGTTGTAGTAGGCAAAGACAGACAGGTGAGCTCAGAGAAATTGCAAAGGCTAGGTTGGAGTTACCGGTCATTGGACGATACTCTCATTGACTCTGTTGAAAGCTACCGGGAGGCTGGACTATTGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Epimerase

Protein Analysis

219

Amino Acids

24.56

Weight (kDa)

8.7

Isoelectric Point (pI)

56.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S26e PF01283 2 - 36 1.8e-10 Ribosomal protein S26e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 157
AccB1I GGYRCC 1 cut(s) 492
AccB7I CCANNNNNTGG 1 cut(s) 122
AccBSI CCGCTC 1 cut(s) 314
AccIII TCCGGA 1 cut(s) 172
AciI CCGC 2 cut(s) 239, 312
AclWI GGATC 1 cut(s) 480
AcuI CTGAAG 2 cut(s) 414, 450
AcyI GRCGYC 1 cut(s) 493
AdeI CACNNNGTG 1 cut(s) 40
AfaI GTAC 2 cut(s) 8, 381
AfiI CCNNNNNNNGG 5 cut(s) 66, 122, 137, 268, 598
AgeI ACCGGT 1 cut(s) 591
AgsI TTSAA 3 cut(s) 235, 278, 626
AjnI CCWGG 2 cut(s) 121, 130
AloI GAACNNNNNNTCC 2 cut(s) 147, 179
AluBI AGCT 6 cut(s) 158, 202, 392, 487, 558, 630
AluI AGCT 6 cut(s) 158, 202, 392, 487, 558, 630
Alw21I GWGCWC 2 cut(s) 130, 560
Alw26I GTCTC 1 cut(s) 57
AlwI GGATC 1 cut(s) 480
Aor13HI TCCGGA 1 cut(s) 172
AoxI GGCC 1 cut(s) 119
AsiGI ACCGGT 1 cut(s) 591
Asp700I GAANNNNTTC 2 cut(s) 230, 399
AspLEI GCGC 1 cut(s) 495
AsuC2I CCSGG 1 cut(s) 635
AsuHPI GGTGA 2 cut(s) 58, 565
AxyI CCTNAGG 1 cut(s) 339
BaeGI GKGCMC 1 cut(s) 138
BanI GGYRCC 1 cut(s) 492
BanII GRGCYC 1 cut(s) 560
Bbv12I GWGCWC 2 cut(s) 130, 560
BbvCI CCTCAGC 1 cut(s) 488
BccI CCATC 1 cut(s) 281
BciT130I CCWGG 2 cut(s) 123, 132
BcnI CCSGG 1 cut(s) 635
BcoDI GTCTC 1 cut(s) 57
BfaI CTAG 2 cut(s) 476, 578
BfoI RGCGCY 1 cut(s) 496
BfuAI ACCTGC 1 cut(s) 157
BmcAI AGTACT 1 cut(s) 8
Bme1390I CCNGG 3 cut(s) 123, 132, 635
BmiI GGNNCC 3 cut(s) 71, 142, 494
BmrFI CCNGG 3 cut(s) 123, 132, 635
BmsI GCATC 2 cut(s) 100, 221
BpmI CTGGAG 2 cut(s) 144, 174
Bpu10I CCTNAGC 1 cut(s) 488
BpuEI CTTGAG 1 cut(s) 214
BpuMI CCSGG 1 cut(s) 635
BsaHI GRCGYC 1 cut(s) 493
BsaI GGTCTC 1 cut(s) 57
BsaJI CCNNGG 2 cut(s) 116, 131
BsaWI WCCGGW 2 cut(s) 172, 591
BsaXI ACNNNNNCTCC 4 cut(s) 58, 88, 147, 177
Bsc4I CCNNNNNNNGG 5 cut(s) 66, 122, 137, 268, 598
Bse118I RCCGGY 1 cut(s) 591
Bse1I ACTGG 3 cut(s) 18, 306, 354
Bse21I CCTNAGG 1 cut(s) 339
BseAI TCCGGA 1 cut(s) 172
BseBI CCWGG 2 cut(s) 123, 132
BseDI CCNNGG 2 cut(s) 116, 131
BseGI GGATG 3 cut(s) 112, 181, 287
BseLI CCNNNNNNNGG 5 cut(s) 66, 122, 137, 268, 598
BseMII CTCAG 5 cut(s) 207, 330, 377, 479, 573
BseNI ACTGG 3 cut(s) 18, 306, 354
BseRI GAGGAG 1 cut(s) 356
BseSI GKGCMC 1 cut(s) 138
BshFI GGCC 1 cut(s) 121
BshNI GGYRCC 1 cut(s) 492
BshTI ACCGGT 1 cut(s) 591
BsiHKAI GWGCWC 2 cut(s) 130, 560
BsiSI CCGG 5 cut(s) 173, 321, 422, 592, 634
BslFI GGGAC 2 cut(s) 294, 436
BslI CCNNNNNNNGG 5 cut(s) 66, 122, 137, 268, 598
BsmAI GTCTC 1 cut(s) 57
BsmFI GGGAC 2 cut(s) 294, 436
BsnI GGCC 1 cut(s) 121
Bso31I GGTCTC 1 cut(s) 57
Bsp1286I GDGCHC 3 cut(s) 130, 138, 560
Bsp13I TCCGGA 1 cut(s) 172
Bsp143I GATC 1 cut(s) 472
BspACI CCGC 2 cut(s) 239, 312
BspANI GGCC 1 cut(s) 121
BspCNI CTCAG 5 cut(s) 208, 331, 376, 480, 572
BspEI TCCGGA 1 cut(s) 172
BspLI GGNNCC 3 cut(s) 71, 142, 494
BspMI ACCTGC 1 cut(s) 157
BspPI GGATC 1 cut(s) 480
BspT107I GGYRCC 1 cut(s) 492
BspTNI GGTCTC 1 cut(s) 57
BsrBI CCGCTC 1 cut(s) 314
BsrFI RCCGGY 1 cut(s) 591
BsrI ACTGG 3 cut(s) 18, 306, 354
BssAI RCCGGY 1 cut(s) 591
BssECI CCNNGG 2 cut(s) 116, 131
BssMI GATC 1 cut(s) 472
BssNI GRCGYC 1 cut(s) 493
BssT1I CCWWGG 1 cut(s) 116
Bst2UI CCWGG 2 cut(s) 123, 132
Bst4CI ACNGT 2 cut(s) 11, 74
BstACI GRCGYC 1 cut(s) 493
BstDEI CTNAG 5 cut(s) 216, 339, 363, 488, 559
BstF5I GGATG 3 cut(s) 112, 181, 287
BstH2I RGCGCY 1 cut(s) 496
BstHHI GCGC 1 cut(s) 495
BstKTI GATC 1 cut(s) 475
BstMAI GTCTC 1 cut(s) 57
BstMBI GATC 1 cut(s) 472
BstMWI GCNNNNNNNGC 1 cut(s) 311
BstNI CCWGG 2 cut(s) 123, 132
BstNSI RCATGY 1 cut(s) 451
BstSCI CCNGG 3 cut(s) 121, 130, 633
BstSLI GKGCMC 1 cut(s) 138
BstX2I RGATCY 1 cut(s) 472
BstYI RGATCY 1 cut(s) 472
Bsu36I CCTNAGG 1 cut(s) 339
BsuRI GGCC 1 cut(s) 121
BtsCI GGATG 3 cut(s) 112, 181, 287
BtsI GCAGTG 1 cut(s) 331
BtsIMutI CAGTG 3 cut(s) 25, 331, 347
BveI ACCTGC 1 cut(s) 157
CfoI GCGC 1 cut(s) 495
Cfr10I RCCGGY 1 cut(s) 591
CseI GACGC 1 cut(s) 108
Csp6I GTAC 2 cut(s) 7, 380
CspAI ACCGGT 1 cut(s) 591
CviAII CATG 2 cut(s) 299, 448
CviQI GTAC 2 cut(s) 7, 380
DdeI CTNAG 5 cut(s) 216, 339, 363, 488, 559
DinI GGCGCC 1 cut(s) 494
DpnI GATC 1 cut(s) 474
DpnII GATC 1 cut(s) 472
DraIII CACNNNGTG 1 cut(s) 40
Ecl136II GAGCTC 1 cut(s) 558
Eco130I CCWWGG 1 cut(s) 116
Eco147I AGGCCT 1 cut(s) 121
Eco24I GRGCYC 1 cut(s) 560
Eco31I GGTCTC 1 cut(s) 57
Eco53kI GAGCTC 1 cut(s) 558
Eco57I CTGAAG 2 cut(s) 414, 450
Eco81I CCTNAGG 1 cut(s) 339
EcoICRI GAGCTC 1 cut(s) 558
EcoRII CCWGG 2 cut(s) 121, 130
EcoT14I CCWWGG 1 cut(s) 116
EcoT22I ATGCAT 1 cut(s) 449
EcoT38I GRGCYC 1 cut(s) 560
EgeI GGCGCC 1 cut(s) 494
EheI GGCGCC 1 cut(s) 494
ErhI CCWWGG 1 cut(s) 116
FaeI CATG 2 cut(s) 302, 451
FaiI YATR 8 cut(s) 255, 300, 407, 412, 414, 443, 445, 449
FalI AAGNNNNNCTT 2 cut(s) 387, 419
FaqI GGGAC 2 cut(s) 294, 436
FatI CATG 2 cut(s) 298, 447
FauI CCCGC 1 cut(s) 319
FauNDI CATATG 2 cut(s) 412, 443
FokI GGATG 3 cut(s) 119, 188, 294
FriOI GRGCYC 1 cut(s) 560
FspBI CTAG 2 cut(s) 476, 578
GlaI GCGC 1 cut(s) 494
GsuI CTGGAG 2 cut(s) 144, 174
HaeII RGCGCY 1 cut(s) 496
HaeIII GGCC 1 cut(s) 121
HapII CCGG 5 cut(s) 173, 321, 422, 592, 634
HgaI GACGC 1 cut(s) 108
HhaI GCGC 1 cut(s) 495
Hin1I GRCGYC 1 cut(s) 493
Hin1II CATG 2 cut(s) 302, 451
Hin6I GCGC 1 cut(s) 493
HinP1I GCGC 1 cut(s) 493
HindIII AAGCTT 1 cut(s) 200
HinfI GANTC 4 cut(s) 90, 257, 344, 617
HpaII CCGG 5 cut(s) 173, 321, 422, 592, 634
HphI GGTGA 2 cut(s) 58, 565
Hpy188I TCNGA 4 cut(s) 98, 217, 366, 562
Hpy188III TCNNGA 2 cut(s) 173, 338
HpyAV CCTTC 3 cut(s) 272, 272, 425
HpyCH4III ACNGT 2 cut(s) 11, 74
HpyCH4IV ACGT 1 cut(s) 36
HpyCH4V TGCA 4 cut(s) 4, 332, 447, 571
HpyF10VI GCNNNNNNNGC 1 cut(s) 311
HpyF3I CTNAG 5 cut(s) 216, 339, 363, 488, 559
HpySE526I ACGT 1 cut(s) 36
Hsp92I GRCGYC 1 cut(s) 493
Hsp92II CATG 2 cut(s) 302, 451
HspAI GCGC 1 cut(s) 493
KasI GGCGCC 1 cut(s) 492
Kpn2I TCCGGA 1 cut(s) 172
Kzo9I GATC 1 cut(s) 472
LmnI GCTCC 4 cut(s) 125, 155, 175, 319
LweI GCATC 2 cut(s) 100, 221
MaeI CTAG 2 cut(s) 476, 578
MaeII ACGT 1 cut(s) 36
MaeIII GTNAC 2 cut(s) 345, 587
MalI GATC 1 cut(s) 474
MbiI CCGCTC 1 cut(s) 314
MboI GATC 1 cut(s) 472
MboII GAAGA 1 cut(s) 447
MfeI CAATTG 1 cut(s) 273
MflI RGATCY 1 cut(s) 472
MhlI GDGCHC 3 cut(s) 130, 138, 560
MluCI AATT 4 cut(s) 273, 505, 511, 566
Mly113I GGCGCC 1 cut(s) 493
MlyI GAGTC 3 cut(s) 251, 353, 611
MmeI TCCRAC 1 cut(s) 563
MnlI CCTC 9 cut(s) 36, 42, 60, 328, 334, 372, 418, 483, 631
Mph1103I ATGCAT 1 cut(s) 449
MroI TCCGGA 1 cut(s) 172
MroXI GAANNNNTTC 2 cut(s) 230, 399
MseI TTAA 1 cut(s) 462
MslI CAYNNNNRTG 1 cut(s) 446
MspI CCGG 5 cut(s) 173, 321, 422, 592, 634
MspR9I CCNGG 3 cut(s) 123, 132, 635
MunI CAATTG 1 cut(s) 273
MvaI CCWGG 2 cut(s) 123, 132
MwoI GCNNNNNNNGC 1 cut(s) 311
NarI GGCGCC 1 cut(s) 493
NciI CCSGG 1 cut(s) 635
NdeI CATATG 2 cut(s) 412, 443
NdeII GATC 1 cut(s) 472
NlaIII CATG 2 cut(s) 302, 451
NlaIV GGNNCC 3 cut(s) 71, 142, 494
NmeAIII GCCGAG 1 cut(s) 248
NmuCI GTSAC 1 cut(s) 345
NsiI ATGCAT 1 cut(s) 449
NspI RCATGY 1 cut(s) 451
PceI AGGCCT 1 cut(s) 121
PdmI GAANNNNTTC 2 cut(s) 230, 399
PfeI GAWTC 1 cut(s) 90
PflMI CCANNNNNTGG 1 cut(s) 122
PinAI ACCGGT 1 cut(s) 591
PleI GAGTC 3 cut(s) 251, 352, 611
PluTI GGCGCC 1 cut(s) 496
PpsI GAGTC 3 cut(s) 251, 352, 611
Psp124BI GAGCTC 1 cut(s) 560
Psp6I CCWGG 2 cut(s) 121, 130
PspGI CCWGG 2 cut(s) 121, 130
PspN4I GGNNCC 3 cut(s) 71, 142, 494
PsuI RGATCY 1 cut(s) 472
RsaI GTAC 2 cut(s) 8, 381
RsaNI GTAC 2 cut(s) 7, 380
RseI CAYNNNNRTG 1 cut(s) 446
SacI GAGCTC 1 cut(s) 560
SaqAI TTAA 1 cut(s) 462
Sau3AI GATC 1 cut(s) 472
ScaI AGTACT 1 cut(s) 8
SchI GAGTC 3 cut(s) 251, 353, 611
ScrFI CCNGG 3 cut(s) 123, 132, 635
SduI GDGCHC 3 cut(s) 130, 138, 560
SfaNI GCATC 2 cut(s) 100, 221
SfoI GGCGCC 1 cut(s) 494
SmiMI CAYNNNNRTG 1 cut(s) 446
SmlI CTYRAG 1 cut(s) 193
SmoI CTYRAG 1 cut(s) 193
Sse9I AATT 4 cut(s) 273, 505, 511, 566
SseBI AGGCCT 1 cut(s) 121
SsiI CCGC 2 cut(s) 239, 312
SspDI GGCGCC 1 cut(s) 492
SspI AATATT 1 cut(s) 460
SspMI CTAG 2 cut(s) 476, 578
SstI GAGCTC 1 cut(s) 560
StuI AGGCCT 1 cut(s) 121
StyD4I CCNGG 3 cut(s) 121, 130, 633
StyI CCWWGG 1 cut(s) 116
TaaI ACNGT 2 cut(s) 11, 74
TaiI ACGT 1 cut(s) 39
TasI AATT 4 cut(s) 273, 505, 511, 566
TatI WGTACW 1 cut(s) 6
TfiI GAWTC 1 cut(s) 90
Tru1I TTAA 1 cut(s) 462
Tru9I TTAA 1 cut(s) 462
TscAI CASTG 3 cut(s) 25, 331, 354
TseFI GTSAC 1 cut(s) 345
Tsp45I GTSAC 1 cut(s) 345
TspDTI ATGAA 2 cut(s) 82, 287
TspGWI ACGGA 1 cut(s) 153
TspRI CASTG 3 cut(s) 25, 331, 354
Van91I CCANNNNNTGG 1 cut(s) 122
XceI RCATGY 1 cut(s) 451
XmnI GAANNNNTTC 2 cut(s) 230, 399
XspI CTAG 2 cut(s) 476, 578
ZrmI AGTACT 1 cut(s) 8
Zsp2I ATGCAT 1 cut(s) 449
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.