Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0002886

Physical Location & Seq

Genomic Coordinates Forward (+)

13023323 .. 13023835

Gene Structure 513 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0162400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGGAGGTCAAGATCGCTGACTTTTGTTGCAGCGAGATCATGAGCCATAATAGTACTGACAAGTCTTGCAGGTTCGTACGTGGGGACTTGTGCTTATATGAGTCCAGGAGAGGTTTGACCCGGAAAGATCCATATGGCTATGCAAGTGATATTTGGAGCTTTGGGGTGACTATAATGGAACTCTACATGGGTTACTTTCCCTTGCTTCCCAAGTGTCAGAGACAGGACTGGGCATCCCTTATGTGCGCTATCTGTTTTGGAGAGGCGCCATGCTTGCCGGAGGGTGCGTCTGAAGACTTTTGGAGCTTTCTTGAGTGTTGCATGCACAAGGAGGCCTCCAAGAGGTGGACGGCGGCTCAACTTTTGACCCACCCGTTCGTCTGCAAGGCTCAATCCGATGAGTGCAAGCCAAACTCGTTGAACAAGAAAAGAAAACGTGATGATGATGATGATGAGCAAACTGATCGAGATCGAGGTCTCAAAAATCAATCAAGGTTGAACTATGTTAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Epimerase

Protein Analysis

170

Amino Acids

19.66

Weight (kDa)

5.95

Isoelectric Point (pI)

58.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	2 - 127	4.1e-14	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	2 - 122	1.6e-08	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002886)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33590 AT2G33600
fragaria_vesca	FvH4_5g26020 FvH4_5g26020
malus_domestica	MD06G1003200.v1.1 MD06G1003400.v1.1 MD06G1003500.v1.1
prunus_persica	Prupe.5G004800_v2.0.a1
pyrus_communis	pycom06g00330
rosa_chinensis	RchiOBHm_Chr7g0216761 RchiOBHm_Chr7g0216771
rosa_laevigata	RLG00000002535 RLG00000002539
rosa_multiflora	Rmu_sc0000125.1_g000024 Rmu_sc0004941.1_g000013 Rmu_sc0004941.1_g000018
rosa_roxburghii	Rroxscaffold_3G00242880 Rroxscaffold_3G00242920 Rroxscaffold_3G00242940
rosa_rugosa	Rorug07G0148400 Rorug07G0162200 Rorug07G0162200 Rorug07G0162300 Rorug07G0162400 Rorug07G0162800 Rorug07G0162900
rosa_samantha	Rh7AG302400 Rh7AG302600 Rh7AG302800 Rh7BG293900 Rh7BG294000 Rh7BG294200 Rh7CG321100 Rh7CG321400 Rh7DG303000
rosa_wichuraiana	Rw7G025680 Rw7G025700 Rw7G025720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	60
AccB1I	GGYRCC	1 cut(s)	265
AccB7I	CCANNNNNTGG	1 cut(s)	345
AciI	CCGC	1 cut(s)	353
AclWI	GGATC	1 cut(s)	122
AcuI	CTGAAG	1 cut(s)	312
AcyI	GRCGYC	1 cut(s)	266
AfaI	GTAC	2 cut(s)	55, 78
AfiI	CCNNNNNNNGG	2 cut(s)	342, 345
AgsI	TTSAA	2 cut(s)	421, 499
AjnI	CCWGG	1 cut(s)	104
AluBI	AGCT	2 cut(s)	159, 306
AluI	AGCT	2 cut(s)	159, 306
Alw26I	GTCTC	2 cut(s)	214, 482
AlwI	GGATC	1 cut(s)	122
AoxI	GGCC	1 cut(s)	333
ApeKI	GCWGC	1 cut(s)	30
AspLEI	GCGC	2 cut(s)	248, 268
AsuC2I	CCSGG	1 cut(s)	121
AsuHPI	GGTGA	1 cut(s)	178
BanI	GGYRCC	1 cut(s)	265
BbsI	GAAGAC	1 cut(s)	300
BbvI	GCAGC	1 cut(s)	42
BceAI	ACGGC	1 cut(s)	366
BcgI	CGANNNNNNTGC	2 cut(s)	446, 480
BciT130I	CCWGG	1 cut(s)	106
BcnI	CCSGG	1 cut(s)	121
BcoDI	GTCTC	2 cut(s)	214, 482
BfoI	RGCGCY	1 cut(s)	269
BfuAI	ACCTGC	1 cut(s)	60
BisI	GCNGC	2 cut(s)	31, 354
BlsI	GCNGC	2 cut(s)	32, 355
BmcAI	AGTACT	1 cut(s)	55
Bme1390I	CCNGG	2 cut(s)	106, 121
BmiI	GGNNCC	1 cut(s)	267
BmrFI	CCNGG	2 cut(s)	106, 121
BmrI	ACTGGG	1 cut(s)	238
BmsI	GCATC	1 cut(s)	242
BmuI	ACTGGG	1 cut(s)	238
BpiI	GAAGAC	1 cut(s)	300
BpuEI	CTTGAG	1 cut(s)	332
BpuMI	CCSGG	1 cut(s)	121
BsaAI	YACGTR	1 cut(s)	80
BsaBI	GATNNNNATC	1 cut(s)	468
BsaHI	GRCGYC	1 cut(s)	266
BsaI	GGTCTC	1 cut(s)	482
BsaXI	ACNNNNNCTCC	2 cut(s)	272, 302
Bsc4I	CCNNNNNNNGG	2 cut(s)	342, 345
Bse1I	ACTGG	1 cut(s)	233
Bse8I	GATNNNNATC	1 cut(s)	468
BseBI	CCWGG	1 cut(s)	106
BseGI	GGATG	1 cut(s)	233
BseJI	GATNNNNATC	1 cut(s)	468
BseLI	CCNNNNNNNGG	2 cut(s)	342, 345
BseNI	ACTGG	1 cut(s)	233
BseXI	GCAGC	1 cut(s)	42
BshFI	GGCC	1 cut(s)	335
BshNI	GGYRCC	1 cut(s)	265
BsiSI	CCGG	2 cut(s)	121, 278
BsiWI	CGTACG	1 cut(s)	76
BslFI	GGGAC	1 cut(s)	98
BslI	CCNNNNNNNGG	2 cut(s)	342, 345
BsmAI	GTCTC	2 cut(s)	214, 482
BsmFI	GGGAC	1 cut(s)	98
BsnI	GGCC	1 cut(s)	335
Bso31I	GGTCTC	1 cut(s)	482
Bsp143I	GATC	5 cut(s)	12, 36, 127, 463, 469
BspACI	CCGC	1 cut(s)	353
BspANI	GGCC	1 cut(s)	335
BspHI	TCATGA	1 cut(s)	39
BspLI	GGNNCC	1 cut(s)	267
BspMI	ACCTGC	1 cut(s)	60
BspPI	GGATC	1 cut(s)	122
BspT107I	GGYRCC	1 cut(s)	265
BspTNI	GGTCTC	1 cut(s)	482
BsrI	ACTGG	1 cut(s)	233
BssMI	GATC	5 cut(s)	12, 36, 127, 463, 469
BssNI	GRCGYC	1 cut(s)	266
Bst2UI	CCWGG	1 cut(s)	106
BstACI	GRCGYC	1 cut(s)	266
BstBAI	YACGTR	1 cut(s)	80
BstC8I	GCNNGC	3 cut(s)	275, 323, 407
BstENI	CCTNNNNNAGG	1 cut(s)	340
BstF5I	GGATG	1 cut(s)	233
BstH2I	RGCGCY	1 cut(s)	269
BstHHI	GCGC	2 cut(s)	248, 268
BstKTI	GATC	5 cut(s)	15, 39, 130, 466, 472
BstMAI	GTCTC	2 cut(s)	214, 482
BstMBI	GATC	5 cut(s)	12, 36, 127, 463, 469
BstMWI	GCNNNNNNNGC	1 cut(s)	274
BstNI	CCWGG	1 cut(s)	106
BstNSI	RCATGY	1 cut(s)	325
BstSCI	CCNGG	2 cut(s)	104, 119
BstV1I	GCAGC	1 cut(s)	42
BstV2I	GAAGAC	1 cut(s)	300
BstX2I	RGATCY	1 cut(s)	127
BstYI	RGATCY	1 cut(s)	127
BsuRI	GGCC	1 cut(s)	335
BtsCI	GGATG	1 cut(s)	233
BveI	ACCTGC	1 cut(s)	60
Cac8I	GCNNGC	3 cut(s)	275, 323, 407
CciI	TCATGA	1 cut(s)	39
CfoI	GCGC	2 cut(s)	248, 268
CseI	GACGC	1 cut(s)	276
Csp6I	GTAC	2 cut(s)	54, 77
CviAII	CATG	4 cut(s)	40, 187, 270, 322
CviJI	RGCY	8 cut(s)	45, 138, 159, 306, 335, 356, 389, 409
CviKI_1	RGCY	8 cut(s)	45, 138, 159, 306, 335, 356, 389, 409
CviQI	GTAC	2 cut(s)	54, 77
DinI	GGCGCC	1 cut(s)	267
DpnI	GATC	5 cut(s)	14, 38, 129, 465, 471
DpnII	GATC	5 cut(s)	12, 36, 127, 463, 469
Eco147I	AGGCCT	1 cut(s)	335
Eco31I	GGTCTC	1 cut(s)	482
Eco57I	CTGAAG	1 cut(s)	312
EcoNI	CCTNNNNNAGG	1 cut(s)	340
EcoRII	CCWGG	1 cut(s)	104
EgeI	GGCGCC	1 cut(s)	267
EheI	GGCGCC	1 cut(s)	267
FaeI	CATG	4 cut(s)	43, 190, 273, 325
FaqI	GGGAC	1 cut(s)	98
FatI	CATG	4 cut(s)	39, 186, 269, 321
FauNDI	CATATG	1 cut(s)	133
Fnu4HI	GCNGC	2 cut(s)	31, 354
FokI	GGATG	1 cut(s)	220
Fsp4HI	GCNGC	2 cut(s)	31, 354
GlaI	GCGC	2 cut(s)	247, 267
GluI	GCNGC	2 cut(s)	31, 354
HaeII	RGCGCY	1 cut(s)	269
HaeIII	GGCC	1 cut(s)	335
HapII	CCGG	2 cut(s)	121, 278
HgaI	GACGC	1 cut(s)	276
HhaI	GCGC	2 cut(s)	248, 268
Hin1I	GRCGYC	1 cut(s)	266
Hin1II	CATG	4 cut(s)	43, 190, 273, 325
Hin6I	GCGC	2 cut(s)	246, 266
HinP1I	GCGC	2 cut(s)	246, 266
HinfI	GANTC	1 cut(s)	101
HpaII	CCGG	2 cut(s)	121, 278
HphI	GGTGA	1 cut(s)	178
Hpy166II	GTNNAC	1 cut(s)	348
Hpy188I	TCNGA	3 cut(s)	219, 292, 397
Hpy188III	TCNNGA	4 cut(s)	10, 40, 311, 467
Hpy8I	GTNNAC	1 cut(s)	348
HpyCH4IV	ACGT	2 cut(s)	79, 436
HpyCH4V	TGCA	7 cut(s)	30, 69, 143, 321, 325, 384, 405
HpyF10VI	GCNNNNNNNGC	1 cut(s)	274
HpySE526I	ACGT	2 cut(s)	79, 436
Hsp92I	GRCGYC	1 cut(s)	266
Hsp92II	CATG	4 cut(s)	43, 190, 273, 325
HspAI	GCGC	2 cut(s)	246, 266
KasI	GGCGCC	1 cut(s)	265
Kzo9I	GATC	5 cut(s)	12, 36, 127, 463, 469
LmnI	GCTCC	2 cut(s)	156, 303
LpnPI	CCDG	7 cut(s)	55, 91, 118, 134, 209, 214, 291
Lsp1109I	GCAGC	1 cut(s)	42
LweI	GCATC	1 cut(s)	242
MaeII	ACGT	2 cut(s)	79, 436
MaeIII	GTNAC	2 cut(s)	166, 191
MalI	GATC	5 cut(s)	14, 38, 129, 465, 471
MboI	GATC	5 cut(s)	12, 36, 127, 463, 469
MboII	GAAGA	1 cut(s)	305
MflI	RGATCY	1 cut(s)	127
Mly113I	GGCGCC	1 cut(s)	266
MlyI	GAGTC	1 cut(s)	110
MnlI	CCTC	7 cut(s)	104, 256, 274, 325, 336, 346, 467
MseI	TTAA	1 cut(s)	511
MspI	CCGG	2 cut(s)	121, 278
MspR9I	CCNGG	2 cut(s)	106, 121
MvaI	CCWGG	1 cut(s)	106
MwoI	GCNNNNNNNGC	1 cut(s)	274
NarI	GGCGCC	1 cut(s)	266
NciI	CCSGG	1 cut(s)	121
NdeI	CATATG	1 cut(s)	133
NdeII	GATC	5 cut(s)	12, 36, 127, 463, 469
NlaIII	CATG	4 cut(s)	43, 190, 273, 325
NlaIV	GGNNCC	1 cut(s)	267
NmuCI	GTSAC	1 cut(s)	166
NspI	RCATGY	1 cut(s)	325
PaeI	GCATGC	1 cut(s)	325
PagI	TCATGA	1 cut(s)	39
PceI	AGGCCT	1 cut(s)	335
Pfl23II	CGTACG	1 cut(s)	76
PflMI	CCANNNNNTGG	1 cut(s)	345
PfoI	TCCNGGA	1 cut(s)	104
PkrI	GCNGC	2 cut(s)	32, 355
PleI	GAGTC	1 cut(s)	109
PluTI	GGCGCC	1 cut(s)	269
PpsI	GAGTC	1 cut(s)	109
Ppu21I	YACGTR	1 cut(s)	80
Psp6I	CCWGG	1 cut(s)	104
PspGI	CCWGG	1 cut(s)	104
PspLI	CGTACG	1 cut(s)	76
PspN4I	GGNNCC	1 cut(s)	267
PsuI	RGATCY	1 cut(s)	127
RsaI	GTAC	2 cut(s)	55, 78
RsaNI	GTAC	2 cut(s)	54, 77
SaqAI	TTAA	1 cut(s)	511
SatI	GCNGC	2 cut(s)	31, 354
Sau3AI	GATC	5 cut(s)	12, 36, 127, 463, 469
ScaI	AGTACT	1 cut(s)	55
SchI	GAGTC	1 cut(s)	110
ScrFI	CCNGG	2 cut(s)	106, 121
SfaNI	GCATC	1 cut(s)	242
SfoI	GGCGCC	1 cut(s)	267
SmlI	CTYRAG	1 cut(s)	311
SmoI	CTYRAG	1 cut(s)	311
SphI	GCATGC	1 cut(s)	325
SseBI	AGGCCT	1 cut(s)	335
SsiI	CCGC	1 cut(s)	353
SspDI	GGCGCC	1 cut(s)	265
StuI	AGGCCT	1 cut(s)	335
StyD4I	CCNGG	2 cut(s)	104, 119
TaiI	ACGT	2 cut(s)	82, 439
TaqI	TCGA	2 cut(s)	466, 472
TatI	WGTACW	1 cut(s)	53
TauI	GCSGC	1 cut(s)	356
Tru1I	TTAA	1 cut(s)	511
Tru9I	TTAA	1 cut(s)	511
TseFI	GTSAC	1 cut(s)	166
TseI	GCWGC	1 cut(s)	30
Tsp45I	GTSAC	1 cut(s)	166
Van91I	CCANNNNNTGG	1 cut(s)	345
XagI	CCTNNNNNAGG	1 cut(s)	340
XceI	RCATGY	1 cut(s)	325
ZrmI	AGTACT	1 cut(s)	55

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.