Rh7AG302400

Cinnamoyl-CoA reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0002886
Physical Location & Seq
Forward (+)
33248061 .. 33250863
2803 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG302400.1

Sequence Viewer

Length: 750 bp
ATGGCAGTTCAGAATGGAAGGTTCTGTGTTACAGGGGCTGGAGGCTTCGTTGGCTCCTGGGTCGTTAAGATTCTTCTTTCCAAGAACTGCATAGTCCACGGAACCGTCAGAGAACCCACGGATGACAAGAACTCTCACTTGAGAAAGCTTGACAAGGCATCTGAGAACCTGAAACTATTCAAGGCAGACTTATTGGATTATGACTCCCTTCGCTCGGCAATTGAAGGATGTGATGGAGTATTTCATGTTGCCAGTCCCGCTCCCTCTGGCAGTGTGCCAAATCCTGAGGCAACAGAATCTGAGGCTCTGCAGTTTGCAAAAACAACTGGGATTGATCTTGTGACTGTTTGTCCTACACTTATACTTGGCCCAATTCTGCAGTCGACTGTAAATGCAAGTACCTTCATCTTCATCAAGCTTTTGAAGGAAGGGAAGGAGTCACTGGAAAACAGGCCTCAGAAGATAGTTGACGTACGGGATTTAGCTGAAGCACTTCTTATGGCATATGAGAAGCCGGAGGCTGAAGGAAGATACATATGCATGTCCCACAATGTTAAGAATGAGGATCTAGTTGAGAAGCTGAGGCGCCTTTATCCTAATTACAATTATCCGAAGAACTTTGTTGAAGTAGGCAAAGACAGACAGGTGAGCTCAGAGAAATTGCAAAGGCTAGGTTGGAGTTACCGGTCATTGGACGATACTCTCATTGACTCTGTTGAAAGCTACCGGGAGGCTGGACTATTGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Epimerase

Protein Analysis

249

Amino Acids

27.68

Weight (kDa)

5.7

Isoelectric Point (pI)

39.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NmrA PF05368 7 - 85 1.2e-07 NmrA-like family
Epimerase PF01370 9 - 87 7.6e-11 NAD dependent epimerase/dehydratase family
GDP_Man_Dehyd PF16363 10 - 97 8e-12 GDP-mannose 4,6 dehydratase
3Beta_HSD PF01073 10 - 92 6.8e-08 3-beta hydroxysteroid dehydrogenase/isomerase family
NAD_binding_10 PF13460 12 - 112 3.9e-09 NAD(P)H-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 585
AccBSI CCGCTC 1 cut(s) 260
AccI GTMKAC 1 cut(s) 383
AciI CCGC 1 cut(s) 258
AclWI GGATC 1 cut(s) 573
AcuI CTGAAG 2 cut(s) 507, 543
AcyI GRCGYC 1 cut(s) 586
AfaI GTAC 2 cut(s) 400, 474
AfiI CCNNNNNNNGG 2 cut(s) 214, 691
AgeI ACCGGT 1 cut(s) 684
AgsI TTSAA 5 cut(s) 181, 224, 424, 626, 719
AhdI GACNNNNNGTC 1 cut(s) 348
AjnI CCWGG 1 cut(s) 56
AluBI AGCT 6 cut(s) 148, 418, 485, 580, 651, 723
AluI AGCT 6 cut(s) 148, 418, 485, 580, 651, 723
Alw21I GWGCWC 1 cut(s) 653
AlwI GGATC 1 cut(s) 573
AlwNI CAGNNNCTG 2 cut(s) 38, 299
AoxI GGCC 2 cut(s) 367, 452
AsiGI ACCGGT 1 cut(s) 684
Asp700I GAANNNNTTC 2 cut(s) 176, 492
AspLEI GCGC 1 cut(s) 588
AspS9I GGNCC 1 cut(s) 368
AsuC2I CCSGG 1 cut(s) 728
AsuHPI GGTGA 1 cut(s) 658
AxyI CCTNAGG 1 cut(s) 285
BanI GGYRCC 1 cut(s) 585
BanII GRGCYC 1 cut(s) 653
Bbv12I GWGCWC 1 cut(s) 653
BbvCI CCTCAGC 1 cut(s) 581
BccI CCATC 1 cut(s) 227
BciT130I CCWGG 1 cut(s) 58
BcnI CCSGG 1 cut(s) 728
BfaI CTAG 2 cut(s) 569, 671
BfmI CTRYAG 2 cut(s) 308, 377
BfoI RGCGCY 1 cut(s) 589
Bme1390I CCNGG 2 cut(s) 58, 728
BmeRI GACNNNNNGTC 1 cut(s) 348
BmgT120I GGNCC 1 cut(s) 368
BmiI GGNNCC 3 cut(s) 55, 103, 587
BmrFI CCNGG 2 cut(s) 58, 728
BmrI ACTGGG 1 cut(s) 336
BmsI GCATC 1 cut(s) 167
BmuI ACTGGG 1 cut(s) 336
BpmI CTGGAG 1 cut(s) 60
Bpu10I CCTNAGC 1 cut(s) 581
BpuEI CTTGAG 1 cut(s) 160
BpuMI CCSGG 1 cut(s) 728
BsaHI GRCGYC 1 cut(s) 586
BsaJI CCNNGG 3 cut(s) 57, 97, 117
BsaWI WCCGGW 1 cut(s) 684
BsaXI ACNNNNNCTCC 2 cut(s) 33, 63
Bsc4I CCNNNNNNNGG 2 cut(s) 214, 691
Bse118I RCCGGY 1 cut(s) 684
Bse1I ACTGG 3 cut(s) 252, 331, 447
Bse21I CCTNAGG 1 cut(s) 285
BseBI CCWGG 1 cut(s) 58
BseDI CCNNGG 3 cut(s) 57, 97, 117
BseGI GGATG 2 cut(s) 127, 233
BseLI CCNNNNNNNGG 2 cut(s) 214, 691
BseMII CTCAG 6 cut(s) 153, 276, 291, 470, 572, 666
BseNI ACTGG 3 cut(s) 252, 331, 447
BshFI GGCC 2 cut(s) 369, 454
BshNI GGYRCC 1 cut(s) 585
BshTI ACCGGT 1 cut(s) 684
BsiHKAI GWGCWC 1 cut(s) 653
BsiSI CCGG 3 cut(s) 515, 685, 727
BsiWI CGTACG 1 cut(s) 472
BslFI GGGAC 2 cut(s) 240, 529
BslI CCNNNNNNNGG 2 cut(s) 214, 691
BsmFI GGGAC 2 cut(s) 240, 529
BsnI GGCC 2 cut(s) 369, 454
Bsp1286I GDGCHC 1 cut(s) 653
Bsp143I GATC 2 cut(s) 334, 565
BspACI CCGC 1 cut(s) 258
BspANI GGCC 2 cut(s) 369, 454
BspCNI CTCAG 6 cut(s) 154, 277, 292, 469, 573, 665
BspLI GGNNCC 3 cut(s) 55, 103, 587
BspMAI CTGCAG 2 cut(s) 312, 381
BspPI GGATC 1 cut(s) 573
BspT107I GGYRCC 1 cut(s) 585
BsrBI CCGCTC 1 cut(s) 260
BsrFI RCCGGY 1 cut(s) 684
BsrI ACTGG 3 cut(s) 252, 331, 447
BssAI RCCGGY 1 cut(s) 684
BssECI CCNNGG 3 cut(s) 57, 97, 117
BssMI GATC 2 cut(s) 334, 565
BssNI GRCGYC 1 cut(s) 586
Bst2UI CCWGG 1 cut(s) 58
Bst4CI ACNGT 3 cut(s) 106, 346, 388
BstACI GRCGYC 1 cut(s) 586
BstDEI CTNAG 6 cut(s) 162, 285, 300, 456, 581, 652
BstDSI CCRYGG 2 cut(s) 97, 117
BstF5I GGATG 2 cut(s) 127, 233
BstH2I RGCGCY 1 cut(s) 589
BstHHI GCGC 1 cut(s) 588
BstKTI GATC 2 cut(s) 337, 568
BstMBI GATC 2 cut(s) 334, 565
BstMWI GCNNNNNNNGC 2 cut(s) 51, 257
BstNI CCWGG 1 cut(s) 58
BstNSI RCATGY 1 cut(s) 544
BstSCI CCNGG 2 cut(s) 56, 726
BstSFI CTRYAG 2 cut(s) 308, 377
BstX2I RGATCY 1 cut(s) 565
BstYI RGATCY 1 cut(s) 565
Bsu36I CCTNAGG 1 cut(s) 285
BsuRI GGCC 2 cut(s) 369, 454
BtgI CCRYGG 2 cut(s) 97, 117
BtsCI GGATG 2 cut(s) 127, 233
BtsI GCAGTG 1 cut(s) 277
BtsIMutI CAGTG 2 cut(s) 277, 440
CaiI CAGNNNCTG 2 cut(s) 38, 299
CfoI GCGC 1 cut(s) 588
Cfr10I RCCGGY 1 cut(s) 684
Cfr13I GGNCC 1 cut(s) 368
Csp6I GTAC 2 cut(s) 399, 473
CspAI ACCGGT 1 cut(s) 684
CviAII CATG 2 cut(s) 245, 541
CviQI GTAC 2 cut(s) 399, 473
DdeI CTNAG 6 cut(s) 162, 285, 300, 456, 581, 652
DinI GGCGCC 1 cut(s) 587
DpnI GATC 2 cut(s) 336, 567
DpnII GATC 2 cut(s) 334, 565
DriI GACNNNNNGTC 1 cut(s) 348
Eam1105I GACNNNNNGTC 1 cut(s) 348
Ecl136II GAGCTC 1 cut(s) 651
Eco147I AGGCCT 1 cut(s) 454
Eco24I GRGCYC 1 cut(s) 653
Eco53kI GAGCTC 1 cut(s) 651
Eco57I CTGAAG 2 cut(s) 507, 543
Eco81I CCTNAGG 1 cut(s) 285
EcoICRI GAGCTC 1 cut(s) 651
EcoRII CCWGG 1 cut(s) 56
EcoT22I ATGCAT 1 cut(s) 542
EcoT38I GRGCYC 1 cut(s) 653
EgeI GGCGCC 1 cut(s) 587
EheI GGCGCC 1 cut(s) 587
FaeI CATG 2 cut(s) 248, 544
FalI AAGNNNNNCTT 4 cut(s) 173, 205, 480, 512
FaqI GGGAC 2 cut(s) 240, 529
FatI CATG 2 cut(s) 244, 540
FauI CCCGC 1 cut(s) 265
FauNDI CATATG 2 cut(s) 505, 536
FblI GTMKAC 1 cut(s) 383
FokI GGATG 2 cut(s) 134, 240
FriOI GRGCYC 1 cut(s) 653
FspBI CTAG 2 cut(s) 569, 671
GlaI GCGC 1 cut(s) 587
GsuI CTGGAG 1 cut(s) 60
HaeII RGCGCY 1 cut(s) 589
HaeIII GGCC 2 cut(s) 369, 454
HapII CCGG 3 cut(s) 515, 685, 727
HhaI GCGC 1 cut(s) 588
Hin1I GRCGYC 1 cut(s) 586
Hin1II CATG 2 cut(s) 248, 544
Hin6I GCGC 1 cut(s) 586
HinP1I GCGC 1 cut(s) 586
HincII GTYRAC 2 cut(s) 384, 469
HindII GTYRAC 2 cut(s) 384, 469
HindIII AAGCTT 2 cut(s) 146, 416
HinfI GANTC 5 cut(s) 70, 203, 296, 437, 710
HpaII CCGG 3 cut(s) 515, 685, 727
HphI GGTGA 1 cut(s) 658
Hpy166II GTNNAC 3 cut(s) 97, 384, 469
Hpy188I TCNGA 7 cut(s) 12, 110, 163, 301, 459, 612, 655
Hpy188III TCNNGA 1 cut(s) 284
Hpy8I GTNNAC 3 cut(s) 97, 384, 469
HpyAV CCTTC 8 cut(s) 12, 218, 218, 412, 418, 422, 427, 518
HpyCH4III ACNGT 3 cut(s) 106, 346, 388
HpyCH4IV ACGT 1 cut(s) 471
HpyCH4V TGCA 7 cut(s) 90, 310, 317, 379, 395, 540, 664
HpyF10VI GCNNNNNNNGC 2 cut(s) 51, 257
HpyF3I CTNAG 6 cut(s) 162, 285, 300, 456, 581, 652
HpySE526I ACGT 1 cut(s) 471
Hsp92I GRCGYC 1 cut(s) 586
Hsp92II CATG 2 cut(s) 248, 544
HspAI GCGC 1 cut(s) 586
KasI GGCGCC 1 cut(s) 585
Kzo9I GATC 2 cut(s) 334, 565
LmnI GCTCC 2 cut(s) 59, 265
LweI GCATC 1 cut(s) 167
MaeI CTAG 2 cut(s) 569, 671
MaeII ACGT 1 cut(s) 471
MaeIII GTNAC 4 cut(s) 28, 340, 438, 680
MalI GATC 2 cut(s) 336, 567
MbiI CCGCTC 1 cut(s) 260
MboI GATC 2 cut(s) 334, 565
MboII GAAGA 5 cut(s) 65, 400, 472, 540, 625
MfeI CAATTG 1 cut(s) 219
MflI RGATCY 1 cut(s) 565
MhlI GDGCHC 1 cut(s) 653
MluCI AATT 5 cut(s) 219, 372, 598, 604, 659
Mly113I GGCGCC 1 cut(s) 586
MlyI GAGTC 3 cut(s) 197, 446, 704
MmeI TCCRAC 1 cut(s) 656
MnlI CCTC 9 cut(s) 35, 274, 280, 295, 465, 511, 556, 576, 724
Mph1103I ATGCAT 1 cut(s) 542
MroXI GAANNNNTTC 2 cut(s) 176, 492
MseI TTAA 2 cut(s) 66, 555
MslI CAYNNNNRTG 1 cut(s) 539
MspI CCGG 3 cut(s) 515, 685, 727
MspR9I CCNGG 2 cut(s) 58, 728
MunI CAATTG 1 cut(s) 219
MvaI CCWGG 1 cut(s) 58
MwoI GCNNNNNNNGC 2 cut(s) 51, 257
NarI GGCGCC 1 cut(s) 586
NciI CCSGG 1 cut(s) 728
NdeI CATATG 2 cut(s) 505, 536
NdeII GATC 2 cut(s) 334, 565
NlaIII CATG 2 cut(s) 248, 544
NlaIV GGNNCC 3 cut(s) 55, 103, 587
NmeAIII GCCGAG 1 cut(s) 194
NmuCI GTSAC 2 cut(s) 340, 438
NsiI ATGCAT 1 cut(s) 542
NspI RCATGY 1 cut(s) 544
PceI AGGCCT 1 cut(s) 454
PdmI GAANNNNTTC 2 cut(s) 176, 492
PfeI GAWTC 2 cut(s) 70, 296
Pfl23II CGTACG 1 cut(s) 472
PinAI ACCGGT 1 cut(s) 684
PleI GAGTC 3 cut(s) 197, 445, 704
PluTI GGCGCC 1 cut(s) 589
PpsI GAGTC 3 cut(s) 197, 445, 704
Psp124BI GAGCTC 1 cut(s) 653
Psp6I CCWGG 1 cut(s) 56
PspGI CCWGG 1 cut(s) 56
PspLI CGTACG 1 cut(s) 472
PspN4I GGNNCC 3 cut(s) 55, 103, 587
PspPI GGNCC 1 cut(s) 368
PstI CTGCAG 2 cut(s) 312, 381
PstNI CAGNNNCTG 2 cut(s) 38, 299
PsuI RGATCY 1 cut(s) 565
RsaI GTAC 2 cut(s) 400, 474
RsaNI GTAC 2 cut(s) 399, 473
RseI CAYNNNNRTG 1 cut(s) 539
SacI GAGCTC 1 cut(s) 653
SalI GTCGAC 1 cut(s) 382
SaqAI TTAA 2 cut(s) 66, 555
Sau3AI GATC 2 cut(s) 334, 565
Sau96I GGNCC 1 cut(s) 368
SchI GAGTC 3 cut(s) 197, 446, 704
ScrFI CCNGG 2 cut(s) 58, 728
SduI GDGCHC 1 cut(s) 653
SfaNI GCATC 1 cut(s) 167
SfcI CTRYAG 2 cut(s) 308, 377
SfoI GGCGCC 1 cut(s) 587
SmiMI CAYNNNNRTG 1 cut(s) 539
SmlI CTYRAG 1 cut(s) 139
SmoI CTYRAG 1 cut(s) 139
Sse9I AATT 5 cut(s) 219, 372, 598, 604, 659
SseBI AGGCCT 1 cut(s) 454
SsiI CCGC 1 cut(s) 258
SspDI GGCGCC 1 cut(s) 585
SspMI CTAG 2 cut(s) 569, 671
SstI GAGCTC 1 cut(s) 653
StuI AGGCCT 1 cut(s) 454
StyD4I CCNGG 2 cut(s) 56, 726
TaaI ACNGT 3 cut(s) 106, 346, 388
TaiI ACGT 1 cut(s) 474
TaqI TCGA 1 cut(s) 383
TasI AATT 5 cut(s) 219, 372, 598, 604, 659
TfiI GAWTC 2 cut(s) 70, 296
Tru1I TTAA 2 cut(s) 66, 555
Tru9I TTAA 2 cut(s) 66, 555
TscAI CASTG 2 cut(s) 277, 447
TseFI GTSAC 2 cut(s) 340, 438
Tsp45I GTSAC 2 cut(s) 340, 438
TspDTI ATGAA 3 cut(s) 233, 394, 400
TspGWI ACGGA 2 cut(s) 114, 134
TspRI CASTG 2 cut(s) 277, 447
XceI RCATGY 1 cut(s) 544
XmiI GTMKAC 1 cut(s) 383
XmnI GAANNNNTTC 2 cut(s) 176, 492
XspI CTAG 2 cut(s) 569, 671
Zsp2I ATGCAT 1 cut(s) 542
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.