Rh7DG303000

Cinnamoyl-CoA reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0002886
Physical Location & Seq
Reverse (-)
34895321 .. 34935399
40079 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG303000.1

Sequence Viewer

Length: 783 bp
ATGGCAGTTCAGAATGGAAGGTTCTGTGTTACAGGGGCTGGAGGCTTCGTTGGCTCCTGGGTCGTTAAGATTCTTCTTTCCAAGAACTGCATAGTCCACGGAACCGTCAGAGAACCCACGGATGACAAGAACTCTCACTTGAGAAAGCTTGACAAGGCATCTGAGAACCTGAAACTATTCAAGGCAGACTTATTGGATTATGACTCCCTTCGCTCGGCAATTGAAGGATGTGATGGAGTATTTCATGTCGCCAGTCCCGCTCCCTCCGGCAGTGTGCCAAATCCTGAGATTGAGTTAATTGAACCTGCTGTTAAGGGGACACTTAATGTACTTAAAGCATCACTTGAAACAAAAGTCAAGCGAGTTGTTTCTGTGTCCTCTATTGCTGCTGTGGCCGCGAATCCTACGTTGGCTGAAGGCCAAGTTTTGGATGAGTCTTGTTGGTCAGATAAGGAATACTGCAGAAATACTGAGAACTGGTATTGCCTTTCAAAAACTGAAGCAGAATCTGAGGCTCTGCAGTTTGCAAAAACAACCGGGATTGATCTTGTGACTGTTTGTCCTACACTTATACTTGGCCCAATTCTGCAGTCGACTGTAAATGCAAGTACCTTCATCTTCATCAAGCTTTTGAAGGGTACGTACTACTTTTGCCATAATGATACCGCATTCAATACTGCTAAACTTTTCATACTTGTAGACAAACATCTAGTTGGTAGAAAGGTTAATAACCATTATATTTTGTGCTTGTTTACATGTGTTTGTCTATATTTTGGTAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Epimerase

Protein Analysis

260

Amino Acids

28.4

Weight (kDa)

6.97

Isoelectric Point (pI)

38.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NmrA PF05368 7 - 123 3e-08 NmrA-like family
KR PF08659 7 - 136 2.6e-07 KR domain
Epimerase PF01370 9 - 195 2.6e-23 NAD dependent epimerase/dehydratase family
Polysacc_synt_2 PF02719 9 - 134 5.4e-10 Polysaccharide biosynthesis protein
3Beta_HSD PF01073 10 - 200 6.3e-19 3-beta hydroxysteroid dehydrogenase/isomerase family
GDP_Man_Dehyd PF16363 10 - 127 1.1e-14 GDP-mannose 4,6 dehydratase
NAD_binding_4 PF07993 10 - 204 4.3e-09 Male sterility protein
NAD_binding_10 PF13460 12 - 134 3.3e-14 NAD(P)H-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 313
AccB7I CCANNNNNTGG 1 cut(s) 427
AccBSI CCGCTC 1 cut(s) 260
AccI GTMKAC 2 cut(s) 593, 699
AccII CGCG 1 cut(s) 398
AciI CCGC 3 cut(s) 258, 396, 666
AcoI YGGCCR 1 cut(s) 393
AcuI CTGAAG 2 cut(s) 435, 519
AfaI GTAC 4 cut(s) 330, 610, 640, 644
AfiI CCNNNNNNNGG 2 cut(s) 214, 427
AflIII ACRYGT 1 cut(s) 755
AgsI TTSAA 7 cut(s) 181, 224, 302, 347, 492, 634, 673
AhdI GACNNNNNGTC 1 cut(s) 558
AjnI CCWGG 1 cut(s) 56
AjuI GAANNNNNNNTTGG 2 cut(s) 392, 424
AluBI AGCT 3 cut(s) 148, 628, 780
AluI AGCT 3 cut(s) 148, 628, 780
AlwNI CAGNNNCTG 2 cut(s) 38, 509
AoxI GGCC 3 cut(s) 393, 418, 577
ApeKI GCWGC 1 cut(s) 386
Asp700I GAANNNNTTC 1 cut(s) 176
AspS9I GGNCC 1 cut(s) 578
AsuC2I CCSGG 1 cut(s) 538
BarI GAAGNNNNNNTAC 2 cut(s) 626, 658
BbvI GCAGC 1 cut(s) 373
BccI CCATC 1 cut(s) 227
BciT130I CCWGG 1 cut(s) 58
BcnI CCSGG 1 cut(s) 538
BfaI CTAG 1 cut(s) 710
BfmI CTRYAG 3 cut(s) 460, 518, 587
BfuAI ACCTGC 1 cut(s) 313
BisI GCNGC 2 cut(s) 387, 396
BlsI GCNGC 2 cut(s) 388, 397
Bme1390I CCNGG 2 cut(s) 58, 538
BmeRI GACNNNNNGTC 1 cut(s) 558
BmgT120I GGNCC 1 cut(s) 578
BmiI GGNNCC 2 cut(s) 55, 103
BmrFI CCNGG 2 cut(s) 58, 538
BmsI GCATC 2 cut(s) 167, 347
BpmI CTGGAG 1 cut(s) 60
BpuEI CTTGAG 1 cut(s) 160
BpuMI CCSGG 1 cut(s) 538
BsaAI YACGTR 1 cut(s) 642
BsaJI CCNNGG 3 cut(s) 57, 97, 117
BsaXI ACNNNNNCTCC 2 cut(s) 33, 63
Bsc4I CCNNNNNNNGG 2 cut(s) 214, 427
Bse1I ACTGG 2 cut(s) 252, 482
BseBI CCWGG 1 cut(s) 58
BseDI CCNNGG 3 cut(s) 57, 97, 117
BseGI GGATG 3 cut(s) 127, 233, 436
BseLI CCNNNNNNNGG 2 cut(s) 214, 427
BseMII CTCAG 4 cut(s) 153, 276, 462, 501
BseNI ACTGG 2 cut(s) 252, 482
BseXI GCAGC 1 cut(s) 373
Bsh1236I CGCG 1 cut(s) 398
BshFI GGCC 3 cut(s) 395, 420, 579
BsiSI CCGG 2 cut(s) 267, 537
BslFI GGGAC 2 cut(s) 240, 331
BslI CCNNNNNNNGG 2 cut(s) 214, 427
BsmFI GGGAC 2 cut(s) 240, 331
BsmI GAATGC 1 cut(s) 668
BsnI GGCC 3 cut(s) 395, 420, 579
Bsp143I GATC 1 cut(s) 544
BspACI CCGC 3 cut(s) 258, 396, 666
BspANI GGCC 3 cut(s) 395, 420, 579
BspCNI CTCAG 4 cut(s) 154, 277, 463, 502
BspFNI CGCG 1 cut(s) 398
BspLI GGNNCC 2 cut(s) 55, 103
BspMAI CTGCAG 3 cut(s) 464, 522, 591
BspMI ACCTGC 1 cut(s) 313
BsrBI CCGCTC 1 cut(s) 260
BsrI ACTGG 2 cut(s) 252, 482
BssECI CCNNGG 3 cut(s) 57, 97, 117
BssMI GATC 1 cut(s) 544
Bst2UI CCWGG 1 cut(s) 58
Bst4CI ACNGT 3 cut(s) 106, 556, 598
BstBAI YACGTR 1 cut(s) 642
BstDEI CTNAG 4 cut(s) 162, 285, 471, 510
BstDSI CCRYGG 2 cut(s) 97, 117
BstF5I GGATG 3 cut(s) 127, 233, 436
BstFNI CGCG 1 cut(s) 398
BstKTI GATC 1 cut(s) 547
BstMBI GATC 1 cut(s) 544
BstMWI GCNNNNNNNGC 4 cut(s) 51, 257, 392, 395
BstNI CCWGG 1 cut(s) 58
BstNSI RCATGY 1 cut(s) 759
BstSCI CCNGG 2 cut(s) 56, 536
BstSFI CTRYAG 3 cut(s) 460, 518, 587
BstSNI TACGTA 1 cut(s) 642
BstUI CGCG 1 cut(s) 398
BstV1I GCAGC 1 cut(s) 373
BsuRI GGCC 3 cut(s) 395, 420, 579
BtgI CCRYGG 2 cut(s) 97, 117
BtsCI GGATG 3 cut(s) 127, 233, 436
BtsI GCAGTG 1 cut(s) 277
BtsIMutI CAGTG 1 cut(s) 277
BveI ACCTGC 1 cut(s) 313
CaiI CAGNNNCTG 2 cut(s) 38, 509
Cfr13I GGNCC 1 cut(s) 578
Csp6I GTAC 4 cut(s) 329, 609, 639, 643
CviAII CATG 2 cut(s) 245, 756
CviQI GTAC 4 cut(s) 329, 609, 639, 643
DdeI CTNAG 4 cut(s) 162, 285, 471, 510
DpnI GATC 1 cut(s) 546
DpnII GATC 1 cut(s) 544
DriI GACNNNNNGTC 1 cut(s) 558
EaeI YGGCCR 1 cut(s) 393
Eam1105I GACNNNNNGTC 1 cut(s) 558
Eco105I TACGTA 1 cut(s) 642
Eco57I CTGAAG 2 cut(s) 435, 519
EcoRII CCWGG 1 cut(s) 56
FaeI CATG 2 cut(s) 248, 759
FaiI YATR 9 cut(s) 92, 201, 246, 572, 657, 692, 738, 757, 769
FalI AAGNNNNNCTT 4 cut(s) 173, 205, 327, 359
FaqI GGGAC 2 cut(s) 240, 331
FatI CATG 2 cut(s) 244, 755
FauI CCCGC 1 cut(s) 265
FblI GTMKAC 2 cut(s) 593, 699
Fnu4HI GCNGC 2 cut(s) 387, 396
FokI GGATG 3 cut(s) 134, 240, 443
Fsp4HI GCNGC 2 cut(s) 387, 396
FspBI CTAG 1 cut(s) 710
GluI GCNGC 2 cut(s) 387, 396
GsuI CTGGAG 1 cut(s) 60
HaeIII GGCC 3 cut(s) 395, 420, 579
HapII CCGG 2 cut(s) 267, 537
Hin1II CATG 2 cut(s) 248, 759
HincII GTYRAC 1 cut(s) 594
HindII GTYRAC 1 cut(s) 594
HindIII AAGCTT 2 cut(s) 146, 626
HinfI GANTC 5 cut(s) 70, 203, 400, 434, 506
HpaII CCGG 2 cut(s) 267, 537
Hpy166II GTNNAC 4 cut(s) 97, 594, 700, 753
Hpy188I TCNGA 5 cut(s) 12, 110, 163, 448, 511
Hpy188III TCNNGA 1 cut(s) 284
Hpy8I GTNNAC 4 cut(s) 97, 594, 700, 753
HpyAV CCTTC 6 cut(s) 12, 218, 218, 410, 622, 628
HpyCH4III ACNGT 3 cut(s) 106, 556, 598
HpyCH4IV ACGT 2 cut(s) 407, 641
HpyCH4V TGCA 6 cut(s) 90, 462, 520, 527, 589, 605
HpyF10VI GCNNNNNNNGC 4 cut(s) 51, 257, 392, 395
HpyF3I CTNAG 4 cut(s) 162, 285, 471, 510
HpySE526I ACGT 2 cut(s) 407, 641
Hsp92II CATG 2 cut(s) 248, 759
Kzo9I GATC 1 cut(s) 544
LmnI GCTCC 2 cut(s) 59, 265
Lsp1109I GCAGC 1 cut(s) 373
LweI GCATC 2 cut(s) 167, 347
MaeI CTAG 1 cut(s) 710
MaeII ACGT 2 cut(s) 407, 641
MaeIII GTNAC 2 cut(s) 28, 550
MalI GATC 1 cut(s) 546
MbiI CCGCTC 1 cut(s) 260
MboI GATC 1 cut(s) 544
MboII GAAGA 2 cut(s) 65, 610
MfeI CAATTG 1 cut(s) 219
MluCI AATT 3 cut(s) 219, 297, 582
MlyI GAGTC 2 cut(s) 197, 443
MnlI CCTC 4 cut(s) 35, 274, 388, 505
MroXI GAANNNNTTC 1 cut(s) 176
MseI TTAA 6 cut(s) 66, 296, 312, 324, 333, 726
MspI CCGG 2 cut(s) 267, 537
MspR9I CCNGG 2 cut(s) 58, 538
MunI CAATTG 1 cut(s) 219
Mva1269I GAATGC 1 cut(s) 668
MvaI CCWGG 1 cut(s) 58
MvnI CGCG 1 cut(s) 398
MwoI GCNNNNNNNGC 4 cut(s) 51, 257, 392, 395
NciI CCSGG 1 cut(s) 538
NdeII GATC 1 cut(s) 544
NlaIII CATG 2 cut(s) 248, 759
NlaIV GGNNCC 2 cut(s) 55, 103
NmeAIII GCCGAG 1 cut(s) 194
NmuCI GTSAC 1 cut(s) 550
NspI RCATGY 1 cut(s) 759
PciI ACATGT 1 cut(s) 755
PctI GAATGC 1 cut(s) 668
PdmI GAANNNNTTC 1 cut(s) 176
PfeI GAWTC 3 cut(s) 70, 400, 506
PflMI CCANNNNNTGG 1 cut(s) 427
PkrI GCNGC 2 cut(s) 388, 397
PleI GAGTC 2 cut(s) 197, 442
PpsI GAGTC 2 cut(s) 197, 442
Ppu21I YACGTR 1 cut(s) 642
PscI ACATGT 1 cut(s) 755
Psp6I CCWGG 1 cut(s) 56
PspGI CCWGG 1 cut(s) 56
PspN4I GGNNCC 2 cut(s) 55, 103
PspPI GGNCC 1 cut(s) 578
PstI CTGCAG 3 cut(s) 464, 522, 591
PstNI CAGNNNCTG 2 cut(s) 38, 509
RsaI GTAC 4 cut(s) 330, 610, 640, 644
RsaNI GTAC 4 cut(s) 329, 609, 639, 643
SalI GTCGAC 1 cut(s) 592
SaqAI TTAA 6 cut(s) 66, 296, 312, 324, 333, 726
SatI GCNGC 2 cut(s) 387, 396
Sau3AI GATC 1 cut(s) 544
Sau96I GGNCC 1 cut(s) 578
SchI GAGTC 2 cut(s) 197, 443
ScrFI CCNGG 2 cut(s) 58, 538
SfaNI GCATC 2 cut(s) 167, 347
SfcI CTRYAG 3 cut(s) 460, 518, 587
SmlI CTYRAG 1 cut(s) 139
SmoI CTYRAG 1 cut(s) 139
SnaBI TACGTA 1 cut(s) 642
Sse9I AATT 3 cut(s) 219, 297, 582
SsiI CCGC 3 cut(s) 258, 396, 666
SspMI CTAG 1 cut(s) 710
StyD4I CCNGG 2 cut(s) 56, 536
TaaI ACNGT 3 cut(s) 106, 556, 598
TaiI ACGT 2 cut(s) 410, 644
TaqI TCGA 1 cut(s) 593
TasI AATT 3 cut(s) 219, 297, 582
TatI WGTACW 1 cut(s) 328
TauI GCSGC 1 cut(s) 398
TfiI GAWTC 3 cut(s) 70, 400, 506
Tru1I TTAA 6 cut(s) 66, 296, 312, 324, 333, 726
Tru9I TTAA 6 cut(s) 66, 296, 312, 324, 333, 726
TscAI CASTG 1 cut(s) 277
TseFI GTSAC 1 cut(s) 550
TseI GCWGC 1 cut(s) 386
Tsp45I GTSAC 1 cut(s) 550
TspDTI ATGAA 4 cut(s) 233, 604, 610, 679
TspGWI ACGGA 2 cut(s) 114, 134
TspRI CASTG 1 cut(s) 277
Van91I CCANNNNNTGG 1 cut(s) 427
XceI RCATGY 1 cut(s) 759
XmiI GTMKAC 2 cut(s) 593, 699
XmnI GAANNNNTTC 1 cut(s) 176
XspI CTAG 1 cut(s) 710
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.