Rh7CG321400

Cinnamoyl-CoA reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0002886
Physical Location & Seq
Forward (+)
34701183 .. 34722950
21768 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG321400.1

Sequence Viewer

Length: 1149 bp
ATGGCAGTTCAGAATGGAAGGTTCTGTGTAACAGGGGCTGGAGGCTTCGTTGGCTCCTGGGTCGTTAAGCTTCTTCTTTCCAAGAACTGCATAGTCCACGGAACCGTCAGAGAACCCACGGATGACAAGAACTCTCACTTGAGAAAGCTTGACAAGGCATCTGAGAACCTGAAACTGTTCAAGGCGGACTTATTGGATTATGACTCCCTTCGCTCGGCAATTGAAGGATGTGATGGAGTATTTCATGTTGCCAGTCCCGTTCCCTCCGGCAGTGTGCCAAATCCTGAGGCAAAGTTAATTGAACCTGCTGTTAAGGGGACACTTAATGTACTTAAAGCATCACTTGAAGCAAAGGTCAAGCGAGTTGTTTATGTGTCCTCTGTTGCTGCTGTGGCCATGAATCCTACGTGGGCTGAAGGTCAAGTATTGGATGAGTCTTGCTGGTCAGATAAGGAATACTGCAGAAATACTGAGAACTGGTATTGCCTTTCAAAAACTGAAGCAGAATCTGAGGCTCTGCAGTTTGCAAAAACAATCGGGATTGATCTTGTGGCTGTTTGTCCCTATCTTATACTCGGCCCAATTTTGCAGTCGACTATAAATGCAAGTACCATGATCCTCATCAAGCTTTTGAAGGAAGGAAAGGAGTCACTGGAAAACAGGCCCCGGCAGATAGTTGACGTACGGGATTTAGCCGAAGCACTTCTTATGGCATATGAGAAGCCGGAGGCTGAAGGAAGATACATATGCAAGTCCCACAATGTTAAGAATGGGGATCTAGTTGAGAAGCTGAGGCGCCTTTATCCTAATTACAATTACCCGAAGAACTTTGTTGAAGTAGGCGAATACAGAAAGACTGTGAAGGAGAGAGAAACACTCTGTGTTACAGGTGCTGGAGGCTTTGTGGCATCTTGGCTCGTCAACTTGCTGCTTTCTCACGGATTCCAAGTTCATGGCACTGTGAGAGACCCATGCAATGCTTTAATGGAATACAAGCCCCGGAGGGTAGTTGATGTGCGAGATTTAACTCAAGCACTTTTTATGGCCTACGAGAAGCCTGTGGCTAAAGGAAGATACATATGTGCGTCTCACCATTTTAAGACCAGCTCCCCTGTTGAGGAGCTTTTATCCAAAATACAATTATCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Epimerase

Protein Analysis

382

Amino Acids

42.47

Weight (kDa)

8.37

Isoelectric Point (pI)

27.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NmrA PF05368 7 - 131 7.8e-10 NmrA-like family
KR PF08659 7 - 135 6e-07 KR domain
Epimerase PF01370 9 - 245 1.5e-28 NAD dependent epimerase/dehydratase family
Polysacc_synt_2 PF02719 9 - 132 2.7e-09 Polysaccharide biosynthesis protein
GDP_Man_Dehyd PF16363 10 - 263 1.2e-16 GDP-mannose 4,6 dehydratase
3Beta_HSD PF01073 10 - 199 2.4e-20 3-beta hydroxysteroid dehydrogenase/isomerase family
NAD_binding_4 PF07993 10 - 202 3e-09 Male sterility protein
NAD_binding_10 PF13460 12 - 132 1e-13 NAD(P)H-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 313
AccB1I GGYRCC 1 cut(s) 795
AccI GTMKAC 1 cut(s) 593
AciI CCGC 1 cut(s) 185
AclWI GGATC 2 cut(s) 610, 783
AcoI YGGCCR 1 cut(s) 393
AcuI CTGAAG 3 cut(s) 435, 519, 753
AcyI GRCGYC 1 cut(s) 796
AdeI CACNNNGTG 1 cut(s) 881
AfaI GTAC 3 cut(s) 330, 610, 684
AfiI CCNNNNNNNGG 2 cut(s) 214, 1117
AgsI TTSAA 7 cut(s) 181, 224, 302, 347, 492, 634, 836
AjnI CCWGG 1 cut(s) 56
AloI GAACNNNNNNTCC 2 cut(s) 933, 965
AluBI AGCT 6 cut(s) 70, 148, 628, 790, 1107, 1123
AluI AGCT 6 cut(s) 70, 148, 628, 790, 1107, 1123
Alw26I GTCTC 2 cut(s) 960, 1092
AlwI GGATC 2 cut(s) 610, 783
AlwNI CAGNNNCTG 3 cut(s) 38, 509, 893
AoxI GGCC 4 cut(s) 393, 577, 662, 1044
ApeKI GCWGC 2 cut(s) 386, 928
Asp700I GAANNNNTTC 2 cut(s) 176, 702
AspLEI GCGC 1 cut(s) 798
AspS9I GGNCC 2 cut(s) 578, 663
AsuC2I CCSGG 2 cut(s) 667, 1000
AsuHPI GGTGA 1 cut(s) 1082
AxyI CCTNAGG 1 cut(s) 285
BaeI ACNNNNGTAYC 2 cut(s) 1066, 1099
BalI TGGCCA 1 cut(s) 395
BanI GGYRCC 1 cut(s) 795
BbvCI CCTCAGC 1 cut(s) 791
BbvI GCAGC 2 cut(s) 373, 915
BccI CCATC 1 cut(s) 227
BciT130I CCWGG 1 cut(s) 58
BcnI CCSGG 2 cut(s) 667, 1000
BcoDI GTCTC 2 cut(s) 960, 1092
BfaI CTAG 1 cut(s) 779
BfmI CTRYAG 2 cut(s) 460, 518
BfoI RGCGCY 1 cut(s) 799
BfuAI ACCTGC 1 cut(s) 313
BisI GCNGC 2 cut(s) 387, 929
BlsI GCNGC 2 cut(s) 388, 930
Bme1390I CCNGG 3 cut(s) 58, 667, 1000
BmgT120I GGNCC 2 cut(s) 578, 663
BmiI GGNNCC 4 cut(s) 55, 103, 665, 797
BmrFI CCNGG 3 cut(s) 58, 667, 1000
BmsI GCATC 3 cut(s) 167, 347, 917
BplI GAGNNNNNCTC 2 cut(s) 861, 893
BpmI CTGGAG 2 cut(s) 60, 915
Bpu10I CCTNAGC 1 cut(s) 791
BpuEI CTTGAG 2 cut(s) 160, 1014
BpuMI CCSGG 2 cut(s) 667, 1000
BsaAI YACGTR 1 cut(s) 408
BsaBI GATNNNNATC 1 cut(s) 620
BsaHI GRCGYC 1 cut(s) 796
BsaI GGTCTC 1 cut(s) 960
BsaJI CCNNGG 5 cut(s) 57, 97, 117, 665, 998
BsaXI ACNNNNNCTCC 4 cut(s) 33, 63, 888, 918
Bsc4I CCNNNNNNNGG 2 cut(s) 214, 1117
Bse1I ACTGG 3 cut(s) 252, 482, 657
Bse21I CCTNAGG 1 cut(s) 285
Bse3DI GCAATG 1 cut(s) 982
Bse8I GATNNNNATC 1 cut(s) 620
BseBI CCWGG 1 cut(s) 58
BseDI CCNNGG 5 cut(s) 57, 97, 117, 665, 998
BseGI GGATG 3 cut(s) 127, 233, 436
BseJI GATNNNNATC 1 cut(s) 620
BseLI CCNNNNNNNGG 2 cut(s) 214, 1117
BseMI GCAATG 1 cut(s) 982
BseMII CTCAG 5 cut(s) 153, 276, 462, 501, 782
BseNI ACTGG 3 cut(s) 252, 482, 657
BseRI GAGGAG 1 cut(s) 1133
BseXI GCAGC 2 cut(s) 373, 915
BshFI GGCC 4 cut(s) 395, 579, 664, 1046
BshNI GGYRCC 1 cut(s) 795
BsiSI CCGG 4 cut(s) 267, 667, 725, 1000
BsiWI CGTACG 1 cut(s) 682
BslFI GGGAC 4 cut(s) 240, 331, 546, 739
BslI CCNNNNNNNGG 2 cut(s) 214, 1117
BsmAI GTCTC 2 cut(s) 960, 1092
BsmBI CGTCTC 1 cut(s) 1092
BsmFI GGGAC 4 cut(s) 240, 331, 546, 739
BsnI GGCC 4 cut(s) 395, 579, 664, 1046
Bso31I GGTCTC 1 cut(s) 960
Bsp143I GATC 3 cut(s) 544, 615, 775
BspACI CCGC 1 cut(s) 185
BspANI GGCC 4 cut(s) 395, 579, 664, 1046
BspCNI CTCAG 5 cut(s) 154, 277, 463, 502, 783
BspLI GGNNCC 4 cut(s) 55, 103, 665, 797
BspMAI CTGCAG 2 cut(s) 464, 522
BspMI ACCTGC 1 cut(s) 313
BspPI GGATC 2 cut(s) 610, 783
BspT107I GGYRCC 1 cut(s) 795
BspTNI GGTCTC 1 cut(s) 960
BsrDI GCAATG 1 cut(s) 982
BsrI ACTGG 3 cut(s) 252, 482, 657
BssECI CCNNGG 5 cut(s) 57, 97, 117, 665, 998
BssMI GATC 3 cut(s) 544, 615, 775
BssNI GRCGYC 1 cut(s) 796
Bst2UI CCWGG 1 cut(s) 58
Bst4CI ACNGT 4 cut(s) 106, 177, 859, 961
BstACI GRCGYC 1 cut(s) 796
BstBAI YACGTR 1 cut(s) 408
BstDEI CTNAG 5 cut(s) 162, 285, 471, 510, 791
BstDSI CCRYGG 2 cut(s) 97, 117
BstF5I GGATG 3 cut(s) 127, 233, 436
BstH2I RGCGCY 1 cut(s) 799
BstHHI GCGC 1 cut(s) 798
BstKTI GATC 3 cut(s) 547, 618, 778
BstMAI GTCTC 2 cut(s) 960, 1092
BstMBI GATC 3 cut(s) 544, 615, 775
BstMWI GCNNNNNNNGC 2 cut(s) 51, 392
BstNI CCWGG 1 cut(s) 58
BstSCI CCNGG 3 cut(s) 56, 665, 998
BstSFI CTRYAG 2 cut(s) 460, 518
BstV1I GCAGC 2 cut(s) 373, 915
BstX2I RGATCY 1 cut(s) 775
BstXI CCANNNNNNTGG 1 cut(s) 953
BstYI RGATCY 1 cut(s) 775
Bsu36I CCTNAGG 1 cut(s) 285
BsuRI GGCC 4 cut(s) 395, 579, 664, 1046
BtgI CCRYGG 2 cut(s) 97, 117
BtsCI GGATG 3 cut(s) 127, 233, 436
BtsI GCAGTG 1 cut(s) 277
BtsIMutI CAGTG 3 cut(s) 277, 650, 957
BveI ACCTGC 1 cut(s) 313
CaiI CAGNNNCTG 3 cut(s) 38, 509, 893
CfoI GCGC 1 cut(s) 798
Cfr13I GGNCC 2 cut(s) 578, 663
CseI GACGC 1 cut(s) 1074
Csp6I GTAC 3 cut(s) 329, 609, 683
CviAII CATG 5 cut(s) 245, 397, 613, 953, 972
CviQI GTAC 3 cut(s) 329, 609, 683
DdeI CTNAG 5 cut(s) 162, 285, 471, 510, 791
DinI GGCGCC 1 cut(s) 797
DpnI GATC 3 cut(s) 546, 617, 777
DpnII GATC 3 cut(s) 544, 615, 775
DraIII CACNNNGTG 1 cut(s) 881
EaeI YGGCCR 1 cut(s) 393
EciI GGCGGA 1 cut(s) 200
Eco31I GGTCTC 1 cut(s) 960
Eco57I CTGAAG 3 cut(s) 435, 519, 753
Eco81I CCTNAGG 1 cut(s) 285
EcoO109I RGGNCCY 1 cut(s) 663
EcoRII CCWGG 1 cut(s) 56
EgeI GGCGCC 1 cut(s) 797
EheI GGCGCC 1 cut(s) 797
Esp3I CGTCTC 1 cut(s) 1092
FaeI CATG 5 cut(s) 248, 400, 616, 956, 975
FalI AAGNNNNNCTT 6 cut(s) 173, 205, 327, 359, 690, 722
FaqI GGGAC 4 cut(s) 240, 331, 546, 739
FatI CATG 5 cut(s) 244, 396, 612, 952, 971
FauNDI CATATG 3 cut(s) 715, 746, 1079
FblI GTMKAC 1 cut(s) 593
Fnu4HI GCNGC 2 cut(s) 387, 929
FokI GGATG 3 cut(s) 134, 240, 443
Fsp4HI GCNGC 2 cut(s) 387, 929
FspBI CTAG 1 cut(s) 779
GlaI GCGC 1 cut(s) 797
GluI GCNGC 2 cut(s) 387, 929
GsuI CTGGAG 2 cut(s) 60, 915
HaeII RGCGCY 1 cut(s) 799
HaeIII GGCC 4 cut(s) 395, 579, 664, 1046
HapII CCGG 4 cut(s) 267, 667, 725, 1000
HgaI GACGC 1 cut(s) 1074
HhaI GCGC 1 cut(s) 798
Hin1I GRCGYC 1 cut(s) 796
Hin1II CATG 5 cut(s) 248, 400, 616, 956, 975
Hin6I GCGC 1 cut(s) 796
HinP1I GCGC 1 cut(s) 796
HincII GTYRAC 3 cut(s) 594, 679, 922
HindII GTYRAC 3 cut(s) 594, 679, 922
HindIII AAGCTT 3 cut(s) 68, 146, 626
HinfI GANTC 6 cut(s) 203, 400, 434, 506, 647, 942
HpaII CCGG 4 cut(s) 267, 667, 725, 1000
HphI GGTGA 1 cut(s) 1082
Hpy166II GTNNAC 4 cut(s) 97, 594, 679, 922
Hpy188I TCNGA 5 cut(s) 12, 110, 163, 448, 511
Hpy188III TCNNGA 2 cut(s) 284, 538
Hpy8I GTNNAC 4 cut(s) 97, 594, 679, 922
HpyAV CCTTC 8 cut(s) 12, 218, 218, 410, 628, 632, 728, 856
HpyCH4III ACNGT 4 cut(s) 106, 177, 859, 961
HpyCH4IV ACGT 2 cut(s) 407, 681
HpyCH4V TGCA 8 cut(s) 90, 462, 520, 527, 589, 605, 750, 975
HpyF10VI GCNNNNNNNGC 2 cut(s) 51, 392
HpyF3I CTNAG 5 cut(s) 162, 285, 471, 510, 791
HpySE526I ACGT 2 cut(s) 407, 681
Hsp92I GRCGYC 1 cut(s) 796
Hsp92II CATG 5 cut(s) 248, 400, 616, 956, 975
HspAI GCGC 1 cut(s) 796
KasI GGCGCC 1 cut(s) 795
Kzo9I GATC 3 cut(s) 544, 615, 775
LmnI GCTCC 3 cut(s) 59, 1112, 1120
Lsp1109I GCAGC 2 cut(s) 373, 915
LweI GCATC 3 cut(s) 167, 347, 917
MaeI CTAG 1 cut(s) 779
MaeII ACGT 2 cut(s) 407, 681
MaeIII GTNAC 3 cut(s) 28, 648, 883
MalI GATC 3 cut(s) 546, 617, 777
MboI GATC 3 cut(s) 544, 615, 775
MboII GAAGA 4 cut(s) 65, 750, 835, 1083
MfeI CAATTG 1 cut(s) 219
MflI RGATCY 1 cut(s) 775
MlsI TGGCCA 1 cut(s) 395
MluCI AATT 6 cut(s) 219, 297, 582, 808, 814, 1139
MluNI TGGCCA 1 cut(s) 395
Mly113I GGCGCC 1 cut(s) 796
MlyI GAGTC 3 cut(s) 197, 443, 656
Mox20I TGGCCA 1 cut(s) 395
MroXI GAANNNNTTC 2 cut(s) 176, 702
MscI TGGCCA 1 cut(s) 395
MseI TTAA 9 cut(s) 66, 296, 312, 324, 333, 765, 983, 1025, 1098
Msp20I TGGCCA 1 cut(s) 395
MspI CCGG 4 cut(s) 267, 667, 725, 1000
MspR9I CCNGG 3 cut(s) 58, 667, 1000
MunI CAATTG 1 cut(s) 219
MvaI CCWGG 1 cut(s) 58
MwoI GCNNNNNNNGC 2 cut(s) 51, 392
NarI GGCGCC 1 cut(s) 796
NciI CCSGG 2 cut(s) 667, 1000
NdeI CATATG 3 cut(s) 715, 746, 1079
NdeII GATC 3 cut(s) 544, 615, 775
NlaIII CATG 5 cut(s) 248, 400, 616, 956, 975
NlaIV GGNNCC 4 cut(s) 55, 103, 665, 797
NmeAIII GCCGAG 2 cut(s) 194, 555
NmuCI GTSAC 1 cut(s) 648
PdmI GAANNNNTTC 2 cut(s) 176, 702
PfeI GAWTC 3 cut(s) 400, 506, 942
Pfl23II CGTACG 1 cut(s) 682
PkrI GCNGC 2 cut(s) 388, 930
PleI GAGTC 3 cut(s) 197, 442, 655
PluTI GGCGCC 1 cut(s) 799
PpsI GAGTC 3 cut(s) 197, 442, 655
Ppu21I YACGTR 1 cut(s) 408
Psp6I CCWGG 1 cut(s) 56
PspGI CCWGG 1 cut(s) 56
PspLI CGTACG 1 cut(s) 682
PspN4I GGNNCC 4 cut(s) 55, 103, 665, 797
PspPI GGNCC 2 cut(s) 578, 663
PstI CTGCAG 2 cut(s) 464, 522
PstNI CAGNNNCTG 3 cut(s) 38, 509, 893
PsuI RGATCY 1 cut(s) 775
RsaI GTAC 3 cut(s) 330, 610, 684
RsaNI GTAC 3 cut(s) 329, 609, 683
SalI GTCGAC 1 cut(s) 592
SaqAI TTAA 9 cut(s) 66, 296, 312, 324, 333, 765, 983, 1025, 1098
SatI GCNGC 2 cut(s) 387, 929
Sau3AI GATC 3 cut(s) 544, 615, 775
Sau96I GGNCC 2 cut(s) 578, 663
SchI GAGTC 3 cut(s) 197, 443, 656
ScrFI CCNGG 3 cut(s) 58, 667, 1000
SfaNI GCATC 3 cut(s) 167, 347, 917
SfcI CTRYAG 2 cut(s) 460, 518
SfoI GGCGCC 1 cut(s) 797
SmlI CTYRAG 2 cut(s) 139, 1029
SmoI CTYRAG 2 cut(s) 139, 1029
Sse9I AATT 6 cut(s) 219, 297, 582, 808, 814, 1139
SsiI CCGC 1 cut(s) 185
SspDI GGCGCC 1 cut(s) 795
SspMI CTAG 1 cut(s) 779
StyD4I CCNGG 3 cut(s) 56, 665, 998
TaaI ACNGT 4 cut(s) 106, 177, 859, 961
TaiI ACGT 2 cut(s) 410, 684
TaqI TCGA 1 cut(s) 593
TasI AATT 6 cut(s) 219, 297, 582, 808, 814, 1139
TatI WGTACW 1 cut(s) 328
TfiI GAWTC 3 cut(s) 400, 506, 942
Tru1I TTAA 9 cut(s) 66, 296, 312, 324, 333, 765, 983, 1025, 1098
Tru9I TTAA 9 cut(s) 66, 296, 312, 324, 333, 765, 983, 1025, 1098
TscAI CASTG 3 cut(s) 277, 657, 964
TseFI GTSAC 1 cut(s) 648
TseI GCWGC 2 cut(s) 386, 928
Tsp45I GTSAC 1 cut(s) 648
TspDTI ATGAA 3 cut(s) 233, 413, 941
TspGWI ACGGA 3 cut(s) 114, 134, 954
TspRI CASTG 3 cut(s) 277, 657, 964
XmiI GTMKAC 1 cut(s) 593
XmnI GAANNNNTTC 2 cut(s) 176, 702
XspI CTAG 1 cut(s) 779
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.