RLG00000002539

Cinnamoyl-CoA reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0002886
Physical Location & Seq
Forward (+)
36003182 .. 36007915
4734 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002539

Sequence Viewer

Length: 657 bp
ATGACTCCCTTCGGTCGGCAATTGAAGGATGTGATGGAGTATTTCATGTTGCCAGTCCCGTTCCCTCCGGCAGTGTGCCAAATCCTGAGCGAGATTTCGTGCGAGTCAGGCAGATTCTCAGTTGGATCGGAGAGTGAGGTGAGGTCGAGTTTAAAGAAGAGAAGCTTCAGCGAAACTGAAGAGCCGTCTCGGAAAGTTACTCGATCAAGTTATGGAAGAGAGGCGATGAAGAAAGCGATTGTAGGAGACGGCGAAGTTGAGCTGAGAACATTCAGTGAGCTAAGGTCGTGGATCCGGACGATGATGTTTGACGGCCAGAAGCCTGGAACCTCCGAAGGAAAGGAGTCACTGGAAAACAGGCCCCGGCAGATAGTTGACGTACGGGATTTAGCCGAAGCACTTCTTATGGCATATGAGAAGCCGGAGGCTGAAGGAAGATACATATGCAAGTCCCACAATGTTAAGAATGGGGATCTAGTTGAGAAGCTGAGGCGCCTTTATCCTAATTACAATTATCCGAAGAACTTTGTTGAAGTAAGCGAATACAGAAATGTGAGCTCAGAGAAACTGCAAAGGCTAGGTTGGTGTTACCGGTCATTGGACGATACTCTCATTGACTCTGTTGAAAGCTACCGAGAAGCTGGACTATTGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Epimerase

Protein Analysis

219

Amino Acids

25.11

Weight (kDa)

6.09

Isoelectric Point (pI)

53.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 492
AccIII TCCGGA 1 cut(s) 294
AclWI GGATC 4 cut(s) 133, 286, 299, 480
AcoI YGGCCR 1 cut(s) 313
AcuI CTGAAG 3 cut(s) 151, 198, 450
AcyI GRCGYC 1 cut(s) 493
AfaI GTAC 1 cut(s) 381
AfiI CCNNNNNNNGG 2 cut(s) 15, 598
AgeI ACCGGT 1 cut(s) 591
AgsI TTSAA 3 cut(s) 25, 533, 626
AjnI CCWGG 1 cut(s) 322
AluBI AGCT 7 cut(s) 165, 262, 280, 487, 558, 630, 641
AluI AGCT 7 cut(s) 165, 262, 280, 487, 558, 630, 641
Alw21I GWGCWC 1 cut(s) 560
Alw26I GTCTC 2 cut(s) 192, 240
AlwI GGATC 4 cut(s) 133, 286, 299, 480
Aor13HI TCCGGA 1 cut(s) 294
AoxI GGCC 2 cut(s) 313, 359
AsiGI ACCGGT 1 cut(s) 591
Asp700I GAANNNNTTC 1 cut(s) 399
AspLEI GCGC 1 cut(s) 495
AspS9I GGNCC 1 cut(s) 360
AsuC2I CCSGG 1 cut(s) 364
AsuHPI GGTGA 1 cut(s) 151
BamHI GGATCC 1 cut(s) 291
BanI GGYRCC 1 cut(s) 492
BanII GRGCYC 1 cut(s) 560
Bbv12I GWGCWC 1 cut(s) 560
BbvCI CCTCAGC 1 cut(s) 488
BccI CCATC 1 cut(s) 28
BceAI ACGGC 3 cut(s) 169, 265, 328
BciT130I CCWGG 1 cut(s) 324
BcnI CCSGG 1 cut(s) 364
BcoDI GTCTC 2 cut(s) 192, 240
BfaI CTAG 2 cut(s) 476, 578
BfoI RGCGCY 1 cut(s) 496
Bme1390I CCNGG 2 cut(s) 324, 364
BmgT120I GGNCC 1 cut(s) 360
BmiI GGNNCC 4 cut(s) 293, 328, 362, 494
BmrFI CCNGG 2 cut(s) 324, 364
Bpu10I CCTNAGC 3 cut(s) 86, 281, 488
BpuMI CCSGG 1 cut(s) 364
BsaHI GRCGYC 1 cut(s) 493
BsaJI CCNNGG 1 cut(s) 362
BsaWI WCCGGW 2 cut(s) 294, 591
Bsc4I CCNNNNNNNGG 2 cut(s) 15, 598
Bse118I RCCGGY 1 cut(s) 591
Bse1I ACTGG 2 cut(s) 53, 354
BseAI TCCGGA 1 cut(s) 294
BseBI CCWGG 1 cut(s) 324
BseDI CCNNGG 1 cut(s) 362
BseGI GGATG 1 cut(s) 34
BseLI CCNNNNNNNGG 2 cut(s) 15, 598
BseMII CTCAG 5 cut(s) 77, 132, 254, 479, 573
BseNI ACTGG 2 cut(s) 53, 354
Bsh1285I CGRYCG 1 cut(s) 16
BshFI GGCC 2 cut(s) 315, 361
BshNI GGYRCC 1 cut(s) 492
BshTI ACCGGT 1 cut(s) 591
BsiEI CGRYCG 1 cut(s) 16
BsiHKAI GWGCWC 1 cut(s) 560
BsiSI CCGG 5 cut(s) 68, 295, 364, 422, 592
BsiWI CGTACG 1 cut(s) 379
BslFI GGGAC 2 cut(s) 41, 436
BslI CCNNNNNNNGG 2 cut(s) 15, 598
BsmAI GTCTC 2 cut(s) 192, 240
BsmBI CGTCTC 2 cut(s) 192, 240
BsmFI GGGAC 2 cut(s) 41, 436
BsnI GGCC 2 cut(s) 315, 361
Bsp1286I GDGCHC 1 cut(s) 560
Bsp13I TCCGGA 1 cut(s) 294
Bsp143I GATC 4 cut(s) 125, 203, 291, 472
BspANI GGCC 2 cut(s) 315, 361
BspCNI CTCAG 5 cut(s) 78, 131, 255, 480, 572
BspEI TCCGGA 1 cut(s) 294
BspLI GGNNCC 4 cut(s) 293, 328, 362, 494
BspPI GGATC 4 cut(s) 133, 286, 299, 480
BspQI GCTCTTC 1 cut(s) 174
BspT107I GGYRCC 1 cut(s) 492
BsrFI RCCGGY 1 cut(s) 591
BsrI ACTGG 2 cut(s) 53, 354
BssAI RCCGGY 1 cut(s) 591
BssECI CCNNGG 1 cut(s) 362
BssMI GATC 4 cut(s) 125, 203, 291, 472
BssNI GRCGYC 1 cut(s) 493
Bst2UI CCWGG 1 cut(s) 324
Bst6I CTCTTC 3 cut(s) 152, 174, 211
BstACI GRCGYC 1 cut(s) 493
BstDEI CTNAG 6 cut(s) 86, 118, 263, 281, 488, 559
BstF5I GGATG 1 cut(s) 34
BstH2I RGCGCY 1 cut(s) 496
BstHHI GCGC 1 cut(s) 495
BstKTI GATC 4 cut(s) 128, 206, 294, 475
BstMAI GTCTC 2 cut(s) 192, 240
BstMBI GATC 4 cut(s) 125, 203, 291, 472
BstMCI CGRYCG 1 cut(s) 16
BstMWI GCNNNNNNNGC 1 cut(s) 108
BstNI CCWGG 1 cut(s) 324
BstSCI CCNGG 2 cut(s) 322, 362
BstX2I RGATCY 2 cut(s) 291, 472
BstXI CCANNNNNNTGG 1 cut(s) 323
BstYI RGATCY 2 cut(s) 291, 472
BsuRI GGCC 2 cut(s) 315, 361
BtgZI GCGATG 1 cut(s) 239
BtsCI GGATG 1 cut(s) 34
BtsI GCAGTG 1 cut(s) 78
BtsIMutI CAGTG 3 cut(s) 78, 280, 347
CfoI GCGC 1 cut(s) 495
Cfr10I RCCGGY 1 cut(s) 591
Cfr13I GGNCC 1 cut(s) 360
Csp6I GTAC 1 cut(s) 380
CspAI ACCGGT 1 cut(s) 591
CviAII CATG 1 cut(s) 46
CviQI GTAC 1 cut(s) 380
DdeI CTNAG 6 cut(s) 86, 118, 263, 281, 488, 559
DinI GGCGCC 1 cut(s) 494
DpnI GATC 4 cut(s) 127, 205, 293, 474
DpnII GATC 4 cut(s) 125, 203, 291, 472
DraI TTTAAA 1 cut(s) 153
EaeI YGGCCR 1 cut(s) 313
Eam1104I CTCTTC 3 cut(s) 152, 174, 211
EarI CTCTTC 3 cut(s) 152, 174, 211
Ecl136II GAGCTC 1 cut(s) 558
Eco24I GRGCYC 1 cut(s) 560
Eco53kI GAGCTC 1 cut(s) 558
Eco57I CTGAAG 3 cut(s) 151, 198, 450
EcoICRI GAGCTC 1 cut(s) 558
EcoO109I RGGNCCY 1 cut(s) 360
EcoRII CCWGG 1 cut(s) 322
EcoT38I GRGCYC 1 cut(s) 560
EgeI GGCGCC 1 cut(s) 494
EheI GGCGCC 1 cut(s) 494
Esp3I CGTCTC 2 cut(s) 192, 240
FaeI CATG 1 cut(s) 49
FaiI YATR 7 cut(s) 47, 213, 407, 412, 414, 443, 445
FalI AAGNNNNNCTT 4 cut(s) 149, 181, 387, 419
FaqI GGGAC 2 cut(s) 41, 436
FatI CATG 1 cut(s) 45
FauNDI CATATG 2 cut(s) 412, 443
FokI GGATG 1 cut(s) 41
FriOI GRGCYC 1 cut(s) 560
FspBI CTAG 2 cut(s) 476, 578
GlaI GCGC 1 cut(s) 494
HaeII RGCGCY 1 cut(s) 496
HaeIII GGCC 2 cut(s) 315, 361
HapII CCGG 5 cut(s) 68, 295, 364, 422, 592
HhaI GCGC 1 cut(s) 495
Hin1I GRCGYC 1 cut(s) 493
Hin1II CATG 1 cut(s) 49
Hin6I GCGC 1 cut(s) 493
HinP1I GCGC 1 cut(s) 493
HincII GTYRAC 1 cut(s) 376
HindII GTYRAC 1 cut(s) 376
HindIII AAGCTT 1 cut(s) 163
HinfI GANTC 5 cut(s) 4, 104, 114, 344, 617
HpaII CCGG 5 cut(s) 68, 295, 364, 422, 592
HphI GGTGA 1 cut(s) 151
Hpy166II GTNNAC 1 cut(s) 376
Hpy188I TCNGA 5 cut(s) 130, 192, 334, 519, 562
Hpy188III TCNNGA 2 cut(s) 85, 295
Hpy8I GTNNAC 1 cut(s) 376
HpyAV CCTTC 4 cut(s) 19, 19, 329, 425
HpyCH4IV ACGT 1 cut(s) 378
HpyCH4V TGCA 2 cut(s) 447, 571
HpyF10VI GCNNNNNNNGC 1 cut(s) 108
HpyF3I CTNAG 6 cut(s) 86, 118, 263, 281, 488, 559
HpySE526I ACGT 1 cut(s) 378
Hsp92I GRCGYC 1 cut(s) 493
Hsp92II CATG 1 cut(s) 49
HspAI GCGC 1 cut(s) 493
KasI GGCGCC 1 cut(s) 492
Kpn2I TCCGGA 1 cut(s) 294
Kzo9I GATC 4 cut(s) 125, 203, 291, 472
LguI GCTCTTC 1 cut(s) 174
MaeI CTAG 2 cut(s) 476, 578
MaeII ACGT 1 cut(s) 378
MaeIII GTNAC 3 cut(s) 196, 345, 587
MalI GATC 4 cut(s) 127, 205, 293, 474
MboI GATC 4 cut(s) 125, 203, 291, 472
MboII GAAGA 6 cut(s) 169, 191, 228, 241, 447, 532
MfeI CAATTG 1 cut(s) 20
MflI RGATCY 2 cut(s) 291, 472
MhlI GDGCHC 1 cut(s) 560
MluCI AATT 3 cut(s) 20, 505, 511
Mly113I GGCGCC 1 cut(s) 493
MlyI GAGTC 3 cut(s) 113, 353, 611
MmeI TCCRAC 1 cut(s) 103
MnlI CCTC 7 cut(s) 75, 130, 135, 214, 340, 418, 483
MroI TCCGGA 1 cut(s) 294
MroXI GAANNNNTTC 1 cut(s) 399
MseI TTAA 2 cut(s) 152, 462
MspI CCGG 5 cut(s) 68, 295, 364, 422, 592
MspR9I CCNGG 2 cut(s) 324, 364
MunI CAATTG 1 cut(s) 20
MvaI CCWGG 1 cut(s) 324
MwoI GCNNNNNNNGC 1 cut(s) 108
NarI GGCGCC 1 cut(s) 493
NciI CCSGG 1 cut(s) 364
NdeI CATATG 2 cut(s) 412, 443
NdeII GATC 4 cut(s) 125, 203, 291, 472
NlaIII CATG 1 cut(s) 49
NlaIV GGNNCC 4 cut(s) 293, 328, 362, 494
NmuCI GTSAC 1 cut(s) 345
PciSI GCTCTTC 1 cut(s) 174
PdmI GAANNNNTTC 1 cut(s) 399
PfeI GAWTC 1 cut(s) 114
Pfl23II CGTACG 1 cut(s) 379
PinAI ACCGGT 1 cut(s) 591
PleI GAGTC 3 cut(s) 112, 352, 611
PluTI GGCGCC 1 cut(s) 496
PpsI GAGTC 3 cut(s) 112, 352, 611
Psp124BI GAGCTC 1 cut(s) 560
Psp6I CCWGG 1 cut(s) 322
PspGI CCWGG 1 cut(s) 322
PspLI CGTACG 1 cut(s) 379
PspN4I GGNNCC 4 cut(s) 293, 328, 362, 494
PspPI GGNCC 1 cut(s) 360
PsuI RGATCY 2 cut(s) 291, 472
RsaI GTAC 1 cut(s) 381
RsaNI GTAC 1 cut(s) 380
SacI GAGCTC 1 cut(s) 560
SapI GCTCTTC 1 cut(s) 174
SaqAI TTAA 2 cut(s) 152, 462
Sau3AI GATC 4 cut(s) 125, 203, 291, 472
Sau96I GGNCC 1 cut(s) 360
SchI GAGTC 3 cut(s) 113, 353, 611
ScrFI CCNGG 2 cut(s) 324, 364
SduI GDGCHC 1 cut(s) 560
SfoI GGCGCC 1 cut(s) 494
Sse9I AATT 3 cut(s) 20, 505, 511
SspDI GGCGCC 1 cut(s) 492
SspMI CTAG 2 cut(s) 476, 578
SstI GAGCTC 1 cut(s) 560
StyD4I CCNGG 2 cut(s) 322, 362
TaiI ACGT 1 cut(s) 381
TaqI TCGA 2 cut(s) 146, 202
TasI AATT 3 cut(s) 20, 505, 511
TfiI GAWTC 1 cut(s) 114
Tru1I TTAA 2 cut(s) 152, 462
Tru9I TTAA 2 cut(s) 152, 462
TscAI CASTG 3 cut(s) 78, 280, 354
TseFI GTSAC 1 cut(s) 345
Tsp45I GTSAC 1 cut(s) 345
TspDTI ATGAA 2 cut(s) 34, 242
TspRI CASTG 3 cut(s) 78, 280, 354
XmnI GAANNNNTTC 1 cut(s) 399
XspI CTAG 2 cut(s) 476, 578
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.