Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004941.1

Orthogroup ID

OG0002886

Physical Location & Seq

Genomic Coordinates Forward (+)

52127 .. 54960

Gene Structure 2834 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004941.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

atggcagttttgaatggaaggttctgtgttacaggggctggaggcttcgttggctcctgggtcgttaagcttcttctttccaagaactgcatagtccacggaaccgtcagagaacccacggatgacaagaactctcacttgagaaagcttgacaaggcatctgagaacctgaaacttccagttccctccggcagtgtgccaaatcctgaggcaagtgtgtctctcattatcctccaatattggtactttcactggttaacatgctcaatcgtagagttaattgaacctgctgttaaggggacacttaatgtacttaaagcatctcttgaagcaaaagtcaagcgagttgtttatgtgtcctctgttgctgctgtggccatgaatcctacgtgggctgaaggtcaagtattggatgagtcttgctggtcagataaggaatactgcagaaatactgagttgactgtaaatgcaagtaccttggtcctcatcaagcttttgaaggaaggaaaggagtcactggaaaacaggccccggaagatagttgatgtacgggattttgctgaagcacttcttatggcatatgagaagccggaggctgaaggaagatacatatgcatgtcccacaatgttaagaatagggatctagttgagaagctgaggcgcctttatccgaattacaattatccgaagaactttgttgaagtaggcgaagacagacaggtgagctcagagaaactgcaaaggctaggttggagttaccggtcattggatgatactctcattgactctgttgaaagctaccgggaggctggactattggattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Epimerase

Protein Analysis

274

Amino Acids

30.93

Weight (kDa)

6.91

Isoelectric Point (pI)

27.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002886)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33590 AT2G33600
fragaria_vesca	FvH4_5g26020 FvH4_5g26020
malus_domestica	MD06G1003200.v1.1 MD06G1003400.v1.1 MD06G1003500.v1.1
prunus_persica	Prupe.5G004800_v2.0.a1
pyrus_communis	pycom06g00330
rosa_chinensis	RchiOBHm_Chr7g0216761 RchiOBHm_Chr7g0216771
rosa_laevigata	RLG00000002535 RLG00000002539
rosa_multiflora	Rmu_sc0000125.1_g000024 Rmu_sc0004941.1_g000013 Rmu_sc0004941.1_g000018
rosa_roxburghii	Rroxscaffold_3G00242880 Rroxscaffold_3G00242920 Rroxscaffold_3G00242940
rosa_rugosa	Rorug07G0148400 Rorug07G0162200 Rorug07G0162200 Rorug07G0162300 Rorug07G0162400 Rorug07G0162800 Rorug07G0162900
rosa_samantha	Rh7AG302400 Rh7AG302600 Rh7AG302800 Rh7BG293900 Rh7BG294000 Rh7BG294200 Rh7CG321100 Rh7CG321400 Rh7DG303000
rosa_wichuraiana	Rw7G025680 Rw7G025700 Rw7G025720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	295
AccB1I	GGYRCC	1 cut(s)	660
AclWI	GGATC	1 cut(s)	648
AcoI	YGGCCR	1 cut(s)	375
AcuI	CTGAAG	3 cut(s)	417, 582, 618
AcyI	GRCGYC	1 cut(s)	661
AfaI	GTAC	4 cut(s)	245, 312, 475, 549
AfiI	CCNNNNNNNGG	1 cut(s)	766
AgeI	ACCGGT	1 cut(s)	759
AgsI	TTSAA	6 cut(s)	13, 284, 329, 499, 701, 794
AjnI	CCWGG	1 cut(s)	56
AluBI	AGCT	6 cut(s)	70, 148, 493, 655, 726, 798
AluI	AGCT	6 cut(s)	70, 148, 493, 655, 726, 798
Alw21I	GWGCWC	1 cut(s)	728
Alw26I	GTCTC	1 cut(s)	225
AlwI	GGATC	1 cut(s)	648
AlwNI	CAGNNNCTG	1 cut(s)	38
AoxI	GGCC	2 cut(s)	375, 527
ApeKI	GCWGC	1 cut(s)	368
AsiGI	ACCGGT	1 cut(s)	759
Asp700I	GAANNNNTTC	1 cut(s)	567
AspLEI	GCGC	1 cut(s)	663
AspS9I	GGNCC	2 cut(s)	481, 528
AsuC2I	CCSGG	2 cut(s)	532, 803
AsuHPI	GGTGA	1 cut(s)	733
AvaII	GGWCC	1 cut(s)	481
AxyI	CCTNAGG	1 cut(s)	207
BalI	TGGCCA	1 cut(s)	377
BanI	GGYRCC	1 cut(s)	660
BanII	GRGCYC	1 cut(s)	728
BbsI	GAAGAC	1 cut(s)	717
Bbv12I	GWGCWC	1 cut(s)	728
BbvCI	CCTCAGC	1 cut(s)	656
BbvI	GCAGC	1 cut(s)	355
BciT130I	CCWGG	1 cut(s)	58
BcnI	CCSGG	2 cut(s)	532, 803
BcoDI	GTCTC	1 cut(s)	225
BfaI	CTAG	2 cut(s)	644, 746
BfmI	CTRYAG	1 cut(s)	442
BfoI	RGCGCY	1 cut(s)	664
BfuAI	ACCTGC	1 cut(s)	295
BisI	GCNGC	1 cut(s)	369
BlsI	GCNGC	1 cut(s)	370
Bme1390I	CCNGG	3 cut(s)	58, 532, 803
Bme18I	GGWCC	1 cut(s)	481
BmgT120I	GGNCC	2 cut(s)	481, 528
BmiI	GGNNCC	4 cut(s)	55, 103, 530, 662
BmrFI	CCNGG	3 cut(s)	58, 532, 803
BmsI	GCATC	2 cut(s)	167, 329
BpiI	GAAGAC	1 cut(s)	717
BpmI	CTGGAG	1 cut(s)	60
Bpu10I	CCTNAGC	1 cut(s)	656
BpuEI	CTTGAG	1 cut(s)	160
BpuMI	CCSGG	2 cut(s)	532, 803
BsaAI	YACGTR	1 cut(s)	390
BsaHI	GRCGYC	1 cut(s)	661
BsaJI	CCNNGG	5 cut(s)	57, 97, 117, 477, 530
BsaWI	WCCGGW	1 cut(s)	759
BsaXI	ACNNNNNCTCC	2 cut(s)	33, 63
Bsc4I	CCNNNNNNNGG	1 cut(s)	766
Bse118I	RCCGGY	1 cut(s)	759
Bse1I	ACTGG	3 cut(s)	179, 257, 522
Bse21I	CCTNAGG	1 cut(s)	207
BseBI	CCWGG	1 cut(s)	58
BseDI	CCNNGG	5 cut(s)	57, 97, 117, 477, 530
BseGI	GGATG	3 cut(s)	127, 418, 775
BseLI	CCNNNNNNNGG	1 cut(s)	766
BseMII	CTCAG	5 cut(s)	153, 198, 444, 647, 741
BseNI	ACTGG	3 cut(s)	179, 257, 522
BseXI	GCAGC	1 cut(s)	355
BshFI	GGCC	2 cut(s)	377, 529
BshNI	GGYRCC	1 cut(s)	660
BshTI	ACCGGT	1 cut(s)	759
BsiHKAI	GWGCWC	1 cut(s)	728
BsiSI	CCGG	5 cut(s)	189, 532, 590, 760, 802
BslFI	GGGAC	2 cut(s)	313, 604
BslI	CCNNNNNNNGG	1 cut(s)	766
BsmAI	GTCTC	1 cut(s)	225
BsmFI	GGGAC	2 cut(s)	313, 604
BsnI	GGCC	2 cut(s)	377, 529
Bsp1286I	GDGCHC	1 cut(s)	728
Bsp143I	GATC	1 cut(s)	640
BspANI	GGCC	2 cut(s)	377, 529
BspCNI	CTCAG	5 cut(s)	154, 199, 445, 648, 740
BspLI	GGNNCC	4 cut(s)	55, 103, 530, 662
BspMAI	CTGCAG	1 cut(s)	446
BspMI	ACCTGC	1 cut(s)	295
BspPI	GGATC	1 cut(s)	648
BspT107I	GGYRCC	1 cut(s)	660
BsrFI	RCCGGY	1 cut(s)	759
BsrI	ACTGG	3 cut(s)	179, 257, 522
BssAI	RCCGGY	1 cut(s)	759
BssECI	CCNNGG	5 cut(s)	57, 97, 117, 477, 530
BssMI	GATC	1 cut(s)	640
BssNI	GRCGYC	1 cut(s)	661
BssT1I	CCWWGG	1 cut(s)	477
Bst2UI	CCWGG	1 cut(s)	58
Bst4CI	ACNGT	2 cut(s)	106, 463
BstACI	GRCGYC	1 cut(s)	661
BstBAI	YACGTR	1 cut(s)	390
BstDEI	CTNAG	5 cut(s)	162, 207, 453, 656, 727
BstDSI	CCRYGG	2 cut(s)	97, 117
BstF5I	GGATG	3 cut(s)	127, 418, 775
BstH2I	RGCGCY	1 cut(s)	664
BstHHI	GCGC	1 cut(s)	663
BstKTI	GATC	1 cut(s)	643
BstMAI	GTCTC	1 cut(s)	225
BstMBI	GATC	1 cut(s)	640
BstMWI	GCNNNNNNNGC	2 cut(s)	51, 374
BstNI	CCWGG	1 cut(s)	58
BstNSI	RCATGY	2 cut(s)	264, 619
BstSCI	CCNGG	3 cut(s)	56, 530, 801
BstSFI	CTRYAG	1 cut(s)	442
BstV1I	GCAGC	1 cut(s)	355
BstV2I	GAAGAC	1 cut(s)	717
BstX2I	RGATCY	1 cut(s)	640
BstYI	RGATCY	1 cut(s)	640
Bsu36I	CCTNAGG	1 cut(s)	207
BsuRI	GGCC	2 cut(s)	377, 529
BtgI	CCRYGG	2 cut(s)	97, 117
BtsCI	GGATG	3 cut(s)	127, 418, 775
BtsI	GCAGTG	1 cut(s)	199
BtsIMutI	CAGTG	3 cut(s)	199, 250, 515
BveI	ACCTGC	1 cut(s)	295
CaiI	CAGNNNCTG	1 cut(s)	38
CfoI	GCGC	1 cut(s)	663
Cfr10I	RCCGGY	1 cut(s)	759
Cfr13I	GGNCC	2 cut(s)	481, 528
Csp6I	GTAC	4 cut(s)	244, 311, 474, 548
CspAI	ACCGGT	1 cut(s)	759
CviAII	CATG	3 cut(s)	261, 379, 616
CviQI	GTAC	4 cut(s)	244, 311, 474, 548
DdeI	CTNAG	5 cut(s)	162, 207, 453, 656, 727
DinI	GGCGCC	1 cut(s)	662
DpnI	GATC	1 cut(s)	642
DpnII	GATC	1 cut(s)	640
EaeI	YGGCCR	1 cut(s)	375
Ecl136II	GAGCTC	1 cut(s)	726
Eco130I	CCWWGG	1 cut(s)	477
Eco24I	GRGCYC	1 cut(s)	728
Eco47I	GGWCC	1 cut(s)	481
Eco53kI	GAGCTC	1 cut(s)	726
Eco57I	CTGAAG	3 cut(s)	417, 582, 618
Eco81I	CCTNAGG	1 cut(s)	207
EcoICRI	GAGCTC	1 cut(s)	726
EcoO109I	RGGNCCY	1 cut(s)	528
EcoRII	CCWGG	1 cut(s)	56
EcoT14I	CCWWGG	1 cut(s)	477
EcoT22I	ATGCAT	1 cut(s)	617
EcoT38I	GRGCYC	1 cut(s)	728
EgeI	GGCGCC	1 cut(s)	662
EheI	GGCGCC	1 cut(s)	662
ErhI	CCWWGG	1 cut(s)	477
FaeI	CATG	3 cut(s)	264, 382, 619
FalI	AAGNNNNNCTT	4 cut(s)	309, 341, 555, 587
FaqI	GGGAC	2 cut(s)	313, 604
FatI	CATG	3 cut(s)	260, 378, 615
FauNDI	CATATG	2 cut(s)	580, 611
Fnu4HI	GCNGC	1 cut(s)	369
FokI	GGATG	3 cut(s)	134, 425, 782
FriOI	GRGCYC	1 cut(s)	728
Fsp4HI	GCNGC	1 cut(s)	369
FspBI	CTAG	2 cut(s)	644, 746
GlaI	GCGC	1 cut(s)	662
GluI	GCNGC	1 cut(s)	369
GsuI	CTGGAG	1 cut(s)	60
HaeII	RGCGCY	1 cut(s)	664
HaeIII	GGCC	2 cut(s)	377, 529
HapII	CCGG	5 cut(s)	189, 532, 590, 760, 802
HhaI	GCGC	1 cut(s)	663
Hin1I	GRCGYC	1 cut(s)	661
Hin1II	CATG	3 cut(s)	264, 382, 619
Hin6I	GCGC	1 cut(s)	661
HinP1I	GCGC	1 cut(s)	661
HincII	GTYRAC	2 cut(s)	258, 459
HindII	GTYRAC	2 cut(s)	258, 459
HindIII	AAGCTT	3 cut(s)	68, 146, 491
HinfI	GANTC	4 cut(s)	382, 416, 512, 785
HpaI	GTTAAC	1 cut(s)	258
HpaII	CCGG	5 cut(s)	189, 532, 590, 760, 802
HphI	GGTGA	1 cut(s)	733
Hpy166II	GTNNAC	3 cut(s)	97, 258, 459
Hpy188I	TCNGA	6 cut(s)	110, 163, 430, 672, 687, 730
Hpy188III	TCNNGA	2 cut(s)	206, 326
Hpy8I	GTNNAC	3 cut(s)	97, 258, 459
HpyAV	CCTTC	5 cut(s)	12, 392, 493, 497, 593
HpyCH4III	ACNGT	2 cut(s)	106, 463
HpyCH4IV	ACGT	1 cut(s)	389
HpyCH4V	TGCA	5 cut(s)	90, 444, 470, 615, 739
HpyF10VI	GCNNNNNNNGC	2 cut(s)	51, 374
HpyF3I	CTNAG	5 cut(s)	162, 207, 453, 656, 727
HpySE526I	ACGT	1 cut(s)	389
Hsp92I	GRCGYC	1 cut(s)	661
Hsp92II	CATG	3 cut(s)	264, 382, 619
HspAI	GCGC	1 cut(s)	661
KasI	GGCGCC	1 cut(s)	660
KspAI	GTTAAC	1 cut(s)	258
Kzo9I	GATC	1 cut(s)	640
LmnI	GCTCC	1 cut(s)	59
Lsp1109I	GCAGC	1 cut(s)	355
LweI	GCATC	2 cut(s)	167, 329
MaeI	CTAG	2 cut(s)	644, 746
MaeII	ACGT	1 cut(s)	389
MaeIII	GTNAC	3 cut(s)	28, 513, 755
MalI	GATC	1 cut(s)	642
MboI	GATC	1 cut(s)	640
MboII	GAAGA	5 cut(s)	65, 547, 615, 700, 722
MflI	RGATCY	1 cut(s)	640
MhlI	GDGCHC	1 cut(s)	728
MlsI	TGGCCA	1 cut(s)	377
MluCI	AATT	3 cut(s)	279, 673, 679
MluNI	TGGCCA	1 cut(s)	377
Mly113I	GGCGCC	1 cut(s)	661
MlyI	GAGTC	3 cut(s)	425, 521, 779
MmeI	TCCRAC	1 cut(s)	731
MnlI	CCTC	9 cut(s)	35, 196, 202, 242, 370, 494, 586, 651, 799
Mox20I	TGGCCA	1 cut(s)	377
Mph1103I	ATGCAT	1 cut(s)	617
MroXI	GAANNNNTTC	1 cut(s)	567
MscI	TGGCCA	1 cut(s)	377
MseI	TTAA	7 cut(s)	66, 257, 278, 294, 306, 315, 630
MslI	CAYNNNNRTG	1 cut(s)	614
Msp20I	TGGCCA	1 cut(s)	377
MspI	CCGG	5 cut(s)	189, 532, 590, 760, 802
MspR9I	CCNGG	3 cut(s)	58, 532, 803
MvaI	CCWGG	1 cut(s)	58
MwoI	GCNNNNNNNGC	2 cut(s)	51, 374
NarI	GGCGCC	1 cut(s)	661
NciI	CCSGG	2 cut(s)	532, 803
NdeI	CATATG	2 cut(s)	580, 611
NdeII	GATC	1 cut(s)	640
NlaIII	CATG	3 cut(s)	264, 382, 619
NlaIV	GGNNCC	4 cut(s)	55, 103, 530, 662
NmuCI	GTSAC	1 cut(s)	513
NsiI	ATGCAT	1 cut(s)	617
NspI	RCATGY	2 cut(s)	264, 619
PdmI	GAANNNNTTC	1 cut(s)	567
PfeI	GAWTC	1 cut(s)	382
PinAI	ACCGGT	1 cut(s)	759
PkrI	GCNGC	1 cut(s)	370
PleI	GAGTC	3 cut(s)	424, 520, 779
PluTI	GGCGCC	1 cut(s)	664
PpsI	GAGTC	3 cut(s)	424, 520, 779
Ppu21I	YACGTR	1 cut(s)	390
Psp124BI	GAGCTC	1 cut(s)	728
Psp6I	CCWGG	1 cut(s)	56
PspGI	CCWGG	1 cut(s)	56
PspN4I	GGNNCC	4 cut(s)	55, 103, 530, 662
PspPI	GGNCC	2 cut(s)	481, 528
PstI	CTGCAG	1 cut(s)	446
PstNI	CAGNNNCTG	1 cut(s)	38
PsuI	RGATCY	1 cut(s)	640
RsaI	GTAC	4 cut(s)	245, 312, 475, 549
RsaNI	GTAC	4 cut(s)	244, 311, 474, 548
RseI	CAYNNNNRTG	1 cut(s)	614
SacI	GAGCTC	1 cut(s)	728
SaqAI	TTAA	7 cut(s)	66, 257, 278, 294, 306, 315, 630
SatI	GCNGC	1 cut(s)	369
Sau3AI	GATC	1 cut(s)	640
Sau96I	GGNCC	2 cut(s)	481, 528
SchI	GAGTC	3 cut(s)	425, 521, 779
ScrFI	CCNGG	3 cut(s)	58, 532, 803
SduI	GDGCHC	1 cut(s)	728
SfaNI	GCATC	2 cut(s)	167, 329
SfcI	CTRYAG	1 cut(s)	442
SfoI	GGCGCC	1 cut(s)	662
SinI	GGWCC	1 cut(s)	481
SmiMI	CAYNNNNRTG	1 cut(s)	614
SmlI	CTYRAG	1 cut(s)	139
SmoI	CTYRAG	1 cut(s)	139
Sse9I	AATT	3 cut(s)	279, 673, 679
SspDI	GGCGCC	1 cut(s)	660
SspI	AATATT	1 cut(s)	239
SspMI	CTAG	2 cut(s)	644, 746
SstI	GAGCTC	1 cut(s)	728
StyD4I	CCNGG	3 cut(s)	56, 530, 801
StyI	CCWWGG	1 cut(s)	477
TaaI	ACNGT	2 cut(s)	106, 463
TaiI	ACGT	1 cut(s)	392
TasI	AATT	3 cut(s)	279, 673, 679
TatI	WGTACW	1 cut(s)	310
TfiI	GAWTC	1 cut(s)	382
Tru1I	TTAA	7 cut(s)	66, 257, 278, 294, 306, 315, 630
Tru9I	TTAA	7 cut(s)	66, 257, 278, 294, 306, 315, 630
TscAI	CASTG	3 cut(s)	199, 257, 522
TseFI	GTSAC	1 cut(s)	513
TseI	GCWGC	1 cut(s)	368
Tsp45I	GTSAC	1 cut(s)	513
TspDTI	ATGAA	1 cut(s)	395
TspGWI	ACGGA	2 cut(s)	114, 134
TspRI	CASTG	3 cut(s)	199, 257, 522
VpaK11BI	GGWCC	1 cut(s)	481
XceI	RCATGY	2 cut(s)	264, 619
XmnI	GAANNNNTTC	1 cut(s)	567
XspI	CTAG	2 cut(s)	644, 746
Zsp2I	ATGCAT	1 cut(s)	617

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.