Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0001968

Physical Location & Seq

Genomic Coordinates Reverse (-)

6227292 .. 6231695

Gene Structure 4404 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGACCATTTTAGCTAAAAAGCCATTTTTTAATTTTCCTCCAAATATAATCCAACGGCAAATACGAGTGAGAGACGAACGTGTATACCGATCTTGGAAATCAGAGGTCGCAGAGGGTAGCGCAATGGAGGAAGAGGAGCATGAGGTGTACGGAGCAGAGATCCCAGACGAAGGAGAAATGGACGGCGACTTGGATGCTCTCCATGCCGACGTCGACATGTCCACCGCCGACGACGACGCCGTAAAGGAGCTGGACGAGATGAAGAAGCGGTTGAAGGAGATGGAGGAGGAAGCTGCTGCTCTTCGCGAGATGCAGGCCAAGGTTGAAAAGGAAATGGGAGCTGTTCAAGATCCTGCAATTGCTGCTGCTTCTCAAGCAAACAAGGAAGAGGTGGACGCACGATCTGTTTTTGTTGGCAATGTGGATTACGCATGCACACCTGAAGAAGTACAGCAGCATTTCCAATCATGTGGTACGGTTAATAGAGTGACTATACTGACAGATAAGTTTGGCCAACCGAAGGGTTTCGCTTATGTGGAATTTGTTGAAACTGAATCTGTTCAAGAGGCTCTTGGCCTAAACGAATCTGAGTTGCACGGCCGGCAATTGAAGGTTTTGCCTAAAAGGACGAATGTTCCTGGTATGAAGCAATACAGACCTAGACGCTTCAATCCTTATATGGGTTACCGCTTCAGGAGGCCATATGTACCTCCTTACTTTTACTCGCCCTATGGATATGGAAAGGTTCCGAGGTTCAGAAGGCCAGCTCGATACATGCCGTATTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005773 GO:0005774 GO:0008143 GO:0016020 GO:0016604 GO:0016607 GO:0031090 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043621 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0070013 GO:0070717 GO:0097159 GO:0098588 GO:0098805 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03015 ko05164 map03015 map05164

Pfam Domains

Protein Families

RRM_1

Protein Analysis

263

Amino Acids

30.25

Weight (kDa)

5.28

Isoelectric Point (pI)

57.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	136 - 204	5.5e-17	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001968)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10350 AT5G10350 AT5G10350 AT5G10350 AT5G10350 AT5G10350 AT5G65260
fragaria_vesca	FvH4_1g20430 FvH4_1g20430 FvH4_1g20440 FvH4_1g20440
malus_domestica	MD00G1037000.v1.1 MD01G1034000.v1.1 MD01G1034100.v1.1
prunus_persica	Prupe.6G191400_v2.0.a1 Prupe.6G191400_v2.0.a1 Prupe.6G191400_v2.0.a1
pyrus_communis	pycom01g06120 pycom15g28270
rosa_chinensis	RchiOBHm_Chr2g0112681 RchiOBHm_Chr2g0112701 RchiOBHm_Chr2g0112711
rosa_laevigata	RLG00000018002 RLG00000018003
rosa_multiflora	Rmu_co8049960.1_g000001 Rmu_sc0001708.1_g000046 Rmu_sc0001708.1_g000047 Rmu_sc0037397.1_g000001
rosa_roxburghii	Rroxscaffold_2G00131230 Rroxscaffold_2G00131240 Rroxscaffold_7G00188180
rosa_rugosa	Rorug02G0181900
rosa_samantha	Rh2AG236400 Rh2BG249200 Rh2BG249300 Rh2CG240200 Rh2CG240300 Rh2CG240400 Rh2DG243700 Rh2DG243800 Rh2DG243900 Rh3BG013000 Rh5BG229700
rosa_wichuraiana	Rw2G018260 Rw2G018270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	213
AccI	GTMKAC	2 cut(s)	84, 213
AccII	CGCG	1 cut(s)	306
AciI	CCGC	3 cut(s)	225, 268, 688
AclWI	GGATC	2 cut(s)	154, 344
AcoI	YGGCCR	2 cut(s)	511, 598
AcsI	RAATTY	1 cut(s)	539
AcuI	CTGAAG	2 cut(s)	462, 676
AcyI	GRCGYC	2 cut(s)	210, 237
AfaI	GTAC	4 cut(s)	149, 450, 475, 708
AfiI	CCNNNNNNNGG	3 cut(s)	170, 520, 680
AflIII	ACRYGT	2 cut(s)	79, 216
AgsI	TTSAA	7 cut(s)	274, 326, 347, 548, 563, 610, 670
AjnI	CCWGG	1 cut(s)	637
AluBI	AGCT	5 cut(s)	14, 250, 293, 341, 767
AluI	AGCT	5 cut(s)	14, 250, 293, 341, 767
Alw26I	GTCTC	1 cut(s)	66
AlwI	GGATC	2 cut(s)	154, 344
AoxI	GGCC	6 cut(s)	315, 511, 574, 598, 698, 761
ApeKI	GCWGC	5 cut(s)	293, 296, 362, 365, 454
ApoI	RAATTY	1 cut(s)	539
Asp700I	GAANNNNTTC	2 cut(s)	524, 558
AspLEI	GCGC	1 cut(s)	122
BalI	TGGCCA	1 cut(s)	513
BbvI	GCAGC	5 cut(s)	280, 283, 349, 352, 466
BccI	CCATC	1 cut(s)	274
BceAI	ACGGC	5 cut(s)	71, 199, 224, 613, 763
BcgI	CGANNNNNNTGC	2 cut(s)	176, 210
BciT130I	CCWGG	1 cut(s)	639
BcoDI	GTCTC	1 cut(s)	66
BfaI	CTAG	1 cut(s)	660
BisI	GCNGC	5 cut(s)	294, 297, 363, 366, 455
BlsI	GCNGC	5 cut(s)	295, 298, 364, 367, 456
Bme1390I	CCNGG	1 cut(s)	639
BmiI	GGNNCC	1 cut(s)	747
BmrFI	CCNGG	1 cut(s)	639
BmsI	GCATC	2 cut(s)	184, 300
BpuEI	CTTGAG	1 cut(s)	357
BsaHI	GRCGYC	2 cut(s)	210, 237
BsaJI	CCNNGG	2 cut(s)	318, 749
Bsc4I	CCNNNNNNNGG	3 cut(s)	170, 520, 680
Bse118I	RCCGGY	1 cut(s)	600
Bse3DI	GCAATG	2 cut(s)	129, 424
BseBI	CCWGG	1 cut(s)	639
BseDI	CCNNGG	2 cut(s)	318, 749
BseGI	GGATG	1 cut(s)	199
BseLI	CCNNNNNNNGG	3 cut(s)	170, 520, 680
BseMI	GCAATG	2 cut(s)	129, 424
BseMII	CTCAG	1 cut(s)	579
BseRI	GAGGAG	2 cut(s)	149, 299
BseX3I	CGGCCG	1 cut(s)	598
BseXI	GCAGC	5 cut(s)	280, 283, 349, 352, 466
Bsh1236I	CGCG	1 cut(s)	306
Bsh1285I	CGRYCG	1 cut(s)	601
BshFI	GGCC	6 cut(s)	317, 513, 576, 600, 700, 763
BsiEI	CGRYCG	1 cut(s)	601
BsiSI	CCGG	1 cut(s)	601
BslI	CCNNNNNNNGG	3 cut(s)	170, 520, 680
BsmAI	GTCTC	1 cut(s)	66
BsmBI	CGTCTC	1 cut(s)	66
BsnI	GGCC	6 cut(s)	317, 513, 576, 600, 700, 763
Bsp143I	GATC	4 cut(s)	89, 159, 349, 401
Bsp68I	TCGCGA	1 cut(s)	306
BspACI	CCGC	3 cut(s)	225, 268, 688
BspANI	GGCC	6 cut(s)	317, 513, 576, 600, 700, 763
BspCNI	CTCAG	1 cut(s)	580
BspFNI	CGCG	1 cut(s)	306
BspLI	GGNNCC	1 cut(s)	747
BspPI	GGATC	2 cut(s)	154, 344
BspQI	GCTCTTC	1 cut(s)	306
BsrDI	GCAATG	2 cut(s)	129, 424
BsrFI	RCCGGY	1 cut(s)	600
BssAI	RCCGGY	1 cut(s)	600
BssECI	CCNNGG	2 cut(s)	318, 749
BssMI	GATC	4 cut(s)	89, 159, 349, 401
BssNAI	GTATAC	1 cut(s)	85
BssNI	GRCGYC	2 cut(s)	210, 237
BssT1I	CCWWGG	1 cut(s)	318
Bst1107I	GTATAC	1 cut(s)	85
Bst2UI	CCWGG	1 cut(s)	639
Bst4CI	ACNGT	1 cut(s)	478
Bst6I	CTCTTC	3 cut(s)	126, 306, 381
BstACI	GRCGYC	2 cut(s)	210, 237
BstAPI	GCANNNNNTGC	1 cut(s)	362
BstC8I	GCNNGC	4 cut(s)	315, 433, 602, 765
BstDEI	CTNAG	1 cut(s)	588
BstEII	GGTNACC	1 cut(s)	683
BstF5I	GGATG	1 cut(s)	199
BstFNI	CGCG	1 cut(s)	306
BstHHI	GCGC	1 cut(s)	122
BstKTI	GATC	4 cut(s)	92, 162, 352, 404
BstMAI	GTCTC	1 cut(s)	66
BstMBI	GATC	4 cut(s)	89, 159, 349, 401
BstMCI	CGRYCG	1 cut(s)	601
BstMWI	GCNNNNNNNGC	4 cut(s)	203, 362, 374, 601
BstNI	CCWGG	1 cut(s)	639
BstNSI	RCATGY	3 cut(s)	220, 435, 778
BstPI	GGTNACC	1 cut(s)	683
BstSCI	CCNGG	1 cut(s)	637
BstUI	CGCG	1 cut(s)	306
BstV1I	GCAGC	5 cut(s)	280, 283, 349, 352, 466
BstX2I	RGATCY	2 cut(s)	159, 349
BstXI	CCANNNNNNTGG	1 cut(s)	470
BstYI	RGATCY	2 cut(s)	159, 349
BstZ17I	GTATAC	1 cut(s)	85
BstZI	CGGCCG	1 cut(s)	598
BsuRI	GGCC	6 cut(s)	317, 513, 576, 600, 700, 763
BtsCI	GGATG	1 cut(s)	199
BtuMI	TCGCGA	1 cut(s)	306
Cac8I	GCNNGC	4 cut(s)	315, 433, 602, 765
CfoI	GCGC	1 cut(s)	122
Cfr10I	RCCGGY	1 cut(s)	600
CseI	GACGC	3 cut(s)	245, 404, 672
Csp6I	GTAC	4 cut(s)	148, 449, 474, 707
CviAII	CATG	6 cut(s)	140, 203, 217, 432, 468, 775
CviQI	GTAC	4 cut(s)	148, 449, 474, 707
DdeI	CTNAG	1 cut(s)	588
DpnI	GATC	4 cut(s)	91, 161, 351, 403
DpnII	GATC	4 cut(s)	89, 159, 349, 401
EaeI	YGGCCR	2 cut(s)	511, 598
EagI	CGGCCG	1 cut(s)	598
Eam1104I	CTCTTC	3 cut(s)	126, 306, 381
EarI	CTCTTC	3 cut(s)	126, 306, 381
EclXI	CGGCCG	1 cut(s)	598
Eco130I	CCWWGG	1 cut(s)	318
Eco52I	CGGCCG	1 cut(s)	598
Eco57I	CTGAAG	2 cut(s)	462, 676
Eco91I	GGTNACC	1 cut(s)	683
EcoO65I	GGTNACC	1 cut(s)	683
EcoRII	CCWGG	1 cut(s)	637
EcoT14I	CCWWGG	1 cut(s)	318
ErhI	CCWWGG	1 cut(s)	318
Esp3I	CGTCTC	1 cut(s)	66
FaeI	CATG	6 cut(s)	143, 206, 220, 435, 471, 778
FalI	AAGNNNNNCTT	2 cut(s)	555, 587
FatI	CATG	6 cut(s)	139, 202, 216, 431, 467, 774
FauNDI	CATATG	1 cut(s)	703
FblI	GTMKAC	2 cut(s)	84, 213
Fnu4HI	GCNGC	5 cut(s)	294, 297, 363, 366, 455
FokI	GGATG	1 cut(s)	206
Fsp4HI	GCNGC	5 cut(s)	294, 297, 363, 366, 455
FspBI	CTAG	1 cut(s)	660
GlaI	GCGC	1 cut(s)	121
GluI	GCNGC	5 cut(s)	294, 297, 363, 366, 455
HaeIII	GGCC	6 cut(s)	317, 513, 576, 600, 700, 763
HapII	CCGG	1 cut(s)	601
HgaI	GACGC	3 cut(s)	245, 404, 672
HhaI	GCGC	1 cut(s)	122
Hin1I	GRCGYC	2 cut(s)	210, 237
Hin1II	CATG	6 cut(s)	143, 206, 220, 435, 471, 778
Hin6I	GCGC	1 cut(s)	120
HinP1I	GCGC	1 cut(s)	120
HincII	GTYRAC	1 cut(s)	214
HindII	GTYRAC	1 cut(s)	214
HinfI	GANTC	2 cut(s)	554, 584
HpaII	CCGG	1 cut(s)	601
Hpy166II	GTNNAC	5 cut(s)	85, 148, 214, 222, 394
Hpy188I	TCNGA	4 cut(s)	103, 589, 750, 758
Hpy188III	TCNNGA	4 cut(s)	305, 347, 563, 694
Hpy8I	GTNNAC	5 cut(s)	85, 148, 214, 222, 394
Hpy99I	CGWCG	5 cut(s)	212, 215, 233, 236, 239
HpyAV	CCTTC	5 cut(s)	164, 268, 514, 604, 753
HpyCH4III	ACNGT	1 cut(s)	478
HpyCH4IV	ACGT	2 cut(s)	79, 210
HpyCH4V	TGCA	4 cut(s)	313, 356, 435, 595
HpyF10VI	GCNNNNNNNGC	4 cut(s)	203, 362, 374, 601
HpyF3I	CTNAG	1 cut(s)	588
HpySE526I	ACGT	2 cut(s)	79, 210
Hsp92I	GRCGYC	2 cut(s)	210, 237
Hsp92II	CATG	6 cut(s)	143, 206, 220, 435, 471, 778
HspAI	GCGC	1 cut(s)	120
KroI	GCCGGC	1 cut(s)	600
KroNI	GCCGGC	1 cut(s)	602
Kzo9I	GATC	4 cut(s)	89, 159, 349, 401
LguI	GCTCTTC	1 cut(s)	306
LmnI	GCTCC	4 cut(s)	136, 152, 247, 338
Lsp1109I	GCAGC	5 cut(s)	280, 283, 349, 352, 466
LweI	GCATC	2 cut(s)	184, 300
MaeI	CTAG	1 cut(s)	660
MaeII	ACGT	2 cut(s)	79, 210
MaeIII	GTNAC	2 cut(s)	487, 683
MalI	GATC	4 cut(s)	91, 161, 351, 403
MboI	GATC	4 cut(s)	89, 159, 349, 401
MboII	GAAGA	5 cut(s)	143, 274, 293, 398, 455
MfeI	CAATTG	2 cut(s)	357, 605
MflI	RGATCY	2 cut(s)	159, 349
MlsI	TGGCCA	1 cut(s)	513
MluCI	AATT	4 cut(s)	31, 357, 539, 605
MluNI	TGGCCA	1 cut(s)	513
MmeI	TCCRAC	1 cut(s)	76
Mox20I	TGGCCA	1 cut(s)	513
MroNI	GCCGGC	1 cut(s)	600
MroXI	GAANNNNTTC	2 cut(s)	524, 558
MscI	TGGCCA	1 cut(s)	513
MseI	TTAA	2 cut(s)	30, 480
Msp20I	TGGCCA	1 cut(s)	513
MspI	CCGG	1 cut(s)	601
MspR9I	CCNGG	1 cut(s)	639
MunI	CAATTG	2 cut(s)	357, 605
MvaI	CCWGG	1 cut(s)	639
MvnI	CGCG	1 cut(s)	306
MwoI	GCNNNNNNNGC	4 cut(s)	203, 362, 374, 601
NaeI	GCCGGC	1 cut(s)	602
NdeI	CATATG	1 cut(s)	703
NdeII	GATC	4 cut(s)	89, 159, 349, 401
NgoMIV	GCCGGC	1 cut(s)	600
NlaIII	CATG	6 cut(s)	143, 206, 220, 435, 471, 778
NlaIV	GGNNCC	1 cut(s)	747
NmuCI	GTSAC	1 cut(s)	487
NruI	TCGCGA	1 cut(s)	306
NspI	RCATGY	3 cut(s)	220, 435, 778
PaeI	GCATGC	1 cut(s)	435
PciI	ACATGT	1 cut(s)	216
PciSI	GCTCTTC	1 cut(s)	306
PcsI	WCGNNNNNNNCGW	3 cut(s)	61, 85, 237
PdiI	GCCGGC	1 cut(s)	602
PdmI	GAANNNNTTC	2 cut(s)	524, 558
PfeI	GAWTC	2 cut(s)	554, 584
PkrI	GCNGC	5 cut(s)	295, 298, 364, 367, 456
PscI	ACATGT	1 cut(s)	216
Psp6I	CCWGG	1 cut(s)	637
PspEI	GGTNACC	1 cut(s)	683
PspGI	CCWGG	1 cut(s)	637
PspN4I	GGNNCC	1 cut(s)	747
PsuI	RGATCY	2 cut(s)	159, 349
RruI	TCGCGA	1 cut(s)	306
RsaI	GTAC	4 cut(s)	149, 450, 475, 708
RsaNI	GTAC	4 cut(s)	148, 449, 474, 707
SalI	GTCGAC	1 cut(s)	212
SapI	GCTCTTC	1 cut(s)	306
SaqAI	TTAA	2 cut(s)	30, 480
SatI	GCNGC	5 cut(s)	294, 297, 363, 366, 455
Sau3AI	GATC	4 cut(s)	89, 159, 349, 401
ScrFI	CCNGG	1 cut(s)	639
SfaNI	GCATC	2 cut(s)	184, 300
SmlI	CTYRAG	1 cut(s)	372
SmoI	CTYRAG	1 cut(s)	372
SphI	GCATGC	1 cut(s)	435
Sse9I	AATT	4 cut(s)	31, 357, 539, 605
SsiI	CCGC	3 cut(s)	225, 268, 688
SspMI	CTAG	1 cut(s)	660
StyD4I	CCNGG	1 cut(s)	637
StyI	CCWWGG	1 cut(s)	318
TaaI	ACNGT	1 cut(s)	478
TaiI	ACGT	2 cut(s)	82, 213
TaqI	TCGA	2 cut(s)	213, 769
TasI	AATT	4 cut(s)	31, 357, 539, 605
TatI	WGTACW	1 cut(s)	448
TfiI	GAWTC	2 cut(s)	554, 584
Tru1I	TTAA	2 cut(s)	30, 480
Tru9I	TTAA	2 cut(s)	30, 480
TseFI	GTSAC	1 cut(s)	487
TseI	GCWGC	5 cut(s)	293, 296, 362, 365, 454
Tsp45I	GTSAC	1 cut(s)	487
TspDTI	ATGAA	2 cut(s)	275, 659
TspGWI	ACGGA	1 cut(s)	165
XapI	RAATTY	1 cut(s)	539
XceI	RCATGY	3 cut(s)	220, 435, 778
XmiI	GTMKAC	2 cut(s)	84, 213
XmnI	GAANNNNTTC	2 cut(s)	524, 558
XspI	CTAG	1 cut(s)	660
ZraI	GACGTC	1 cut(s)	211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.