pycom01g09700

Protein RIC1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0002130
Physical Location & Seq
Forward (+)
10545796 .. 10546847
1052 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 738 bp
ATGTGGCTTTTCTTTTTCAGGAGCAATATTGTAAGCGATAGCAAACATATACTAGTTGGACTTTCTAATGTAGGACTATATAGTATCCCCTGGAAAGGAGAGGTAAAAGAAAATATTGATATGCATAAATTTTCCTTTCATGTACAGTTCTATGGGACTTTCGAACTTGATCCATTTCCACGTGATGGCAGTGAAGTTATCCCGTCACCACATTCCTTAGATAATGGTGTTGCTTCTAAAGGGGTTCAAGGAACGATTGGCATCTCCCGGAAGTCTGCTATTATCCAGCTAGAGCTTTGCTTTCCATTGAGGTTTCTATTTGTGTTGTATTCTGATGGACAATTAGTGTCATCTGAGAAAAGGTTGGGGGTTGGTGATGCTGTATGTGCTTCAGTAGCTTCAGAGCAACAAATCCTTGCCGTTGGTACCAAAAGAGGGCTTGTGGAGTTATATGACCTTGCAGAATCTGCATCACTGATTCGATCCGTCTCTCTTTATGACTGGGGATACTCAATGGAAGACACTGGACCTGTCAGTTGCATTGCGTGGACACCTGATAATTCTGCTTTTGTAGTTGGGTGGAAGTTAAGAGGACTTACAGTTTGGTCTGTCTCTGGTTGTCGTTTGATGTCAACAATCCGTCAAATAGGTTTAAGTTCAGTATCTTCTCCAATGGTTAAGCCAATCCATGAATGTAAATATGAACCTTTGATGACTGGCACCTCACTGATGCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RIC1

Protein Analysis

246

Amino Acids

27.03

Weight (kDa)

6.21

Isoelectric Point (pI)

44.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_VPS8 PF23410 114 - 215 9.6e-08 Vps8 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 425
AccB1I GGYRCC 2 cut(s) 425, 719
AccB7I CCANNNNNTGG 1 cut(s) 185
AclWI GGATC 2 cut(s) 164, 477
AcsI RAATTY 1 cut(s) 128
AcuI CTGAAG 2 cut(s) 375, 384
AcvI CACGTG 1 cut(s) 182
AfaI GTAC 2 cut(s) 144, 427
AfiI CCNNNNNNNGG 3 cut(s) 95, 185, 435
AgsI TTSAA 1 cut(s) 248
AhlI ACTAGT 1 cut(s) 52
AjnI CCWGG 1 cut(s) 89
AluBI AGCT 3 cut(s) 289, 295, 398
AluI AGCT 3 cut(s) 289, 295, 398
Alw26I GTCTC 2 cut(s) 493, 616
AlwI GGATC 2 cut(s) 164, 477
AlwNI CAGNNNCTG 1 cut(s) 467
ApoI RAATTY 1 cut(s) 128
ArsI GACNNNNNNTTYG 2 cut(s) 585, 617
Asp718I GGTACC 1 cut(s) 425
AspS9I GGNCC 1 cut(s) 527
AsuC2I CCSGG 1 cut(s) 268
AsuHPI GGTGA 2 cut(s) 198, 386
AsuII TTCGAA 1 cut(s) 162
AvaII GGWCC 1 cut(s) 527
BanI GGYRCC 2 cut(s) 425, 719
BbrPI CACGTG 1 cut(s) 182
BbsI GAAGAC 1 cut(s) 525
BccI CCATC 2 cut(s) 179, 329
BceAI ACGGC 1 cut(s) 404
BciT130I CCWGG 1 cut(s) 91
BciVI GTATCC 2 cut(s) 95, 500
BcnI CCSGG 1 cut(s) 268
BcoDI GTCTC 2 cut(s) 493, 616
BcuI ACTAGT 1 cut(s) 52
BfaI CTAG 2 cut(s) 53, 290
BfuI GTATCC 2 cut(s) 95, 500
Bme1390I CCNGG 2 cut(s) 91, 268
Bme18I GGWCC 1 cut(s) 527
BmgT120I GGNCC 1 cut(s) 527
BmiI GGNNCC 2 cut(s) 427, 721
BmrFI CCNGG 2 cut(s) 91, 268
BmrI ACTGGG 1 cut(s) 511
BmsI GCATC 4 cut(s) 270, 367, 479, 720
BmuI ACTGGG 1 cut(s) 511
BpiI GAAGAC 1 cut(s) 525
Bpu14I TTCGAA 1 cut(s) 162
BpuMI CCSGG 1 cut(s) 268
BsaAI YACGTR 1 cut(s) 182
BsaBI GATNNNNATC 1 cut(s) 260
BsaJI CCNNGG 1 cut(s) 89
Bsc4I CCNNNNNNNGG 3 cut(s) 95, 185, 435
Bse1I ACTGG 3 cut(s) 506, 529, 721
Bse3DI GCAATG 1 cut(s) 540
Bse8I GATNNNNATC 1 cut(s) 260
BseBI CCWGG 1 cut(s) 91
BseDI CCNNGG 1 cut(s) 89
BseJI GATNNNNATC 1 cut(s) 260
BseLI CCNNNNNNNGG 3 cut(s) 95, 185, 435
BseMI GCAATG 1 cut(s) 540
BseMII CTCAG 1 cut(s) 345
BseNI ACTGG 3 cut(s) 506, 529, 721
BshNI GGYRCC 2 cut(s) 425, 719
BsiSI CCGG 1 cut(s) 268
BslFI GGGAC 1 cut(s) 169
BslI CCNNNNNNNGG 3 cut(s) 95, 185, 435
BsmAI GTCTC 2 cut(s) 493, 616
BsmBI CGTCTC 1 cut(s) 493
BsmFI GGGAC 1 cut(s) 169
Bsp119I TTCGAA 1 cut(s) 162
Bsp1407I TGTACA 1 cut(s) 142
Bsp143I GATC 2 cut(s) 169, 482
BspCNI CTCAG 1 cut(s) 346
BspLI GGNNCC 2 cut(s) 427, 721
BspPI GGATC 2 cut(s) 164, 477
BspT104I TTCGAA 1 cut(s) 162
BspT107I GGYRCC 2 cut(s) 425, 719
BsrDI GCAATG 1 cut(s) 540
BsrGI TGTACA 1 cut(s) 142
BsrI ACTGG 3 cut(s) 506, 529, 721
BssECI CCNNGG 1 cut(s) 89
BssMI GATC 2 cut(s) 169, 482
Bst2UI CCWGG 1 cut(s) 91
Bst4CI ACNGT 2 cut(s) 147, 601
BstAPI GCANNNNNTGC 1 cut(s) 467
BstAUI TGTACA 1 cut(s) 142
BstBAI YACGTR 1 cut(s) 182
BstBI TTCGAA 1 cut(s) 162
BstDEI CTNAG 2 cut(s) 217, 354
BstKTI GATC 2 cut(s) 172, 485
BstMAI GTCTC 2 cut(s) 493, 616
BstMBI GATC 2 cut(s) 169, 482
BstMWI GCNNNNNNNGC 3 cut(s) 386, 395, 467
BstNI CCWGG 1 cut(s) 91
BstSCI CCNGG 2 cut(s) 89, 266
BstV2I GAAGAC 1 cut(s) 525
BsuI GTATCC 2 cut(s) 95, 500
BtsI GCAGTG 1 cut(s) 196
BtsIMutI CAGTG 4 cut(s) 196, 473, 522, 725
CaiI CAGNNNCTG 1 cut(s) 467
Cfr13I GGNCC 1 cut(s) 527
Csp6I GTAC 2 cut(s) 143, 426
CviAII CATG 2 cut(s) 140, 689
CviJI RGCY 6 cut(s) 7, 289, 295, 398, 439, 682
CviKI_1 RGCY 6 cut(s) 7, 289, 295, 398, 439, 682
CviQI GTAC 2 cut(s) 143, 426
DdeI CTNAG 2 cut(s) 217, 354
DpnI GATC 2 cut(s) 171, 484
DpnII GATC 2 cut(s) 169, 482
Eco47I GGWCC 1 cut(s) 527
Eco57I CTGAAG 2 cut(s) 375, 384
Eco72I CACGTG 1 cut(s) 182
EcoRII CCWGG 1 cut(s) 89
EcoT22I ATGCAT 1 cut(s) 126
Esp3I CGTCTC 1 cut(s) 493
FaeI CATG 2 cut(s) 143, 692
FaqI GGGAC 1 cut(s) 169
FatI CATG 2 cut(s) 139, 688
FspBI CTAG 2 cut(s) 53, 290
HapII CCGG 1 cut(s) 268
Hin1II CATG 2 cut(s) 143, 692
HincII GTYRAC 1 cut(s) 633
HindII GTYRAC 1 cut(s) 633
HinfI GANTC 2 cut(s) 464, 478
HpaII CCGG 1 cut(s) 268
HphI GGTGA 2 cut(s) 198, 386
Hpy166II GTNNAC 2 cut(s) 549, 633
Hpy188I TCNGA 3 cut(s) 334, 355, 403
Hpy188III TCNNGA 1 cut(s) 19
Hpy8I GTNNAC 2 cut(s) 549, 633
HpyCH4III ACNGT 2 cut(s) 147, 601
HpyCH4IV ACGT 1 cut(s) 181
HpyCH4V TGCA 5 cut(s) 124, 461, 470, 540, 733
HpyF10VI GCNNNNNNNGC 3 cut(s) 386, 395, 467
HpyF3I CTNAG 2 cut(s) 217, 354
HpySE526I ACGT 1 cut(s) 181
Hsp92II CATG 2 cut(s) 143, 692
KpnI GGTACC 1 cut(s) 429
Kzo9I GATC 2 cut(s) 169, 482
LmnI GCTCC 1 cut(s) 21
LweI GCATC 4 cut(s) 270, 367, 479, 720
MaeI CTAG 2 cut(s) 53, 290
MaeII ACGT 1 cut(s) 181
MaeIII GTNAC 1 cut(s) 204
MalI GATC 2 cut(s) 171, 484
MboI GATC 2 cut(s) 169, 482
MboII GAAGA 2 cut(s) 530, 657
MluCI AATT 3 cut(s) 128, 341, 559
MmeI TCCRAC 1 cut(s) 37
MnlI CCTC 5 cut(s) 94, 303, 428, 584, 733
Mph1103I ATGCAT 1 cut(s) 126
MseI TTAA 3 cut(s) 587, 653, 678
MspI CCGG 1 cut(s) 268
MspR9I CCNGG 2 cut(s) 91, 268
MvaI CCWGG 1 cut(s) 91
MwoI GCNNNNNNNGC 3 cut(s) 386, 395, 467
NciI CCSGG 1 cut(s) 268
NdeII GATC 2 cut(s) 169, 482
NlaIII CATG 2 cut(s) 143, 692
NlaIV GGNNCC 2 cut(s) 427, 721
NmuCI GTSAC 1 cut(s) 204
NsiI ATGCAT 1 cut(s) 126
NspV TTCGAA 1 cut(s) 162
PfeI GAWTC 2 cut(s) 464, 478
PflMI CCANNNNNTGG 1 cut(s) 185
PfoI TCCNGGA 1 cut(s) 266
PmaCI CACGTG 1 cut(s) 182
PmlI CACGTG 1 cut(s) 182
Ppu21I YACGTR 1 cut(s) 182
Psp6I CCWGG 1 cut(s) 89
PspCI CACGTG 1 cut(s) 182
PspGI CCWGG 1 cut(s) 89
PspN4I GGNNCC 2 cut(s) 427, 721
PspPI GGNCC 1 cut(s) 527
PstNI CAGNNNCTG 1 cut(s) 467
RsaI GTAC 2 cut(s) 144, 427
RsaNI GTAC 2 cut(s) 143, 426
SaqAI TTAA 3 cut(s) 587, 653, 678
Sau3AI GATC 2 cut(s) 169, 482
Sau96I GGNCC 1 cut(s) 527
ScrFI CCNGG 2 cut(s) 91, 268
SfaNI GCATC 4 cut(s) 270, 367, 479, 720
SfuI TTCGAA 1 cut(s) 162
SinI GGWCC 1 cut(s) 527
SpeI ACTAGT 1 cut(s) 52
Sse9I AATT 3 cut(s) 128, 341, 559
SspI AATATT 2 cut(s) 28, 115
SspMI CTAG 2 cut(s) 53, 290
StyD4I CCNGG 2 cut(s) 89, 266
TaaI ACNGT 2 cut(s) 147, 601
TaiI ACGT 1 cut(s) 184
TaqI TCGA 2 cut(s) 162, 481
TasI AATT 3 cut(s) 128, 341, 559
TatI WGTACW 1 cut(s) 142
TfiI GAWTC 2 cut(s) 464, 478
Tru1I TTAA 3 cut(s) 587, 653, 678
Tru9I TTAA 3 cut(s) 587, 653, 678
TscAI CASTG 4 cut(s) 196, 480, 529, 732
TseFI GTSAC 1 cut(s) 204
Tsp45I GTSAC 1 cut(s) 204
TspDTI ATGAA 3 cut(s) 128, 705, 717
TspGWI ACGGA 2 cut(s) 475, 629
TspRI CASTG 4 cut(s) 196, 480, 529, 732
Van91I CCANNNNNTGG 1 cut(s) 185
VpaK11BI GGWCC 1 cut(s) 527
XapI RAATTY 1 cut(s) 128
XspI CTAG 2 cut(s) 53, 290
Zsp2I ATGCAT 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.