pycom04g03080
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0002258
Physical Location & Seq
Forward (+)
2847541 .. 2850220
2680 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 2103 bp
ATGAAAAGGAAGTGGGAAATGGAGGGGGTCGACGGTGGATTGATGTCGAAGCAGAATGATGTACAGCAGCTCGGAAATGATAAAGAGAAATCCAATGAATTTGACAAGAATGTAGGAACTGATAAGGAAAGTGGGGAAGGCAATGGTGGAACTGATAGAGAAAGTGGAGAAGGGGCCAAAAAGAAAAAGAAAAGGAAGAAGGAAACAAAAGGGGTCAATAGTGAATTGAAGTCGAACCAGAGTGATGAACAGCTGCTCGCAAATGATAGAGAGAAATCCAATGAATTTGACAAGAATGTTGGAACTGATAAGGAAAGTGGGGAAGACAAGGGTGGAACTGATAGAGAAAGTGGAGAAGGGGCCAAAAAGAAAAAGAAAAGGAAGAAGGAAACAGAAGGGGTCAATAGTGAATTGATGTCAAACCAGAGTGATGAACAGCTGCTCAGAAATGATAGAGAGAAATCCAATGGGAAAATCATGGAAGAAGCTGACATTGCAGATAACGAAAAGAAGAGAAAGAAACTATCTGAGGATGACGAAATGGGGGATGCCAAAATGAACAAAGGAGAAGTGAATAAAAAGAAAAAGAAAAAGAAGAAAGAGAAGACAGAAAAGGTGGGCGGTGAATCGGTACAGAACATCGTAACTGATGGAAAGGAGGCTGGAGTAGAAAGTAAGCATTCAGATGGGCAAGTCATGGAGAAGGGTGGAATCATGAAAAAAAAGAAAACAAAGAATAGTAAGAATTCAAGAAGTGAAATGCAGGAAACTGGTGGTGAGAAATTGGGCAGCGAAAGCAGAACTCAAGAAAATAATTCCTTAGAGAACGACGGTAATGTTAATGGAACTGGAGACGAGATAAGCAACAGAAATACAGAGGATAAAAATTCTACACATAAAGAAACATCAAAAAGAGTACATTTTGCTGATGATATTGAGGTCTTTTCACTGTTTGATGGCTCAAAAGATGCAGAAGTGGGCAAGGTACGAGGTAAGCGGTTTTCAGCAGAAGAAGACGAGCTTGTGAAAAAGGCTGTTTTAACATACATAGAGGAACATCAGCTGGGTGACGAAGGCATTGACATGGTACTCAATTGTAAGAATTACCCTGAAATCAGAAACTGTTGGAAGGATATTGGGGAAACCTTACCCTGGAGGGATAAGAAAAGCATATATTATCGAGCCCATATGTTATTAGAACGAGCTTCAGAACGTACTTGGACCAAGGAAGAGTATGAAAAAGTCAGACGTGCCGCTATCGAAGCTAAGGAGAAAGGTGAAGCCAAACCCAACTGGAGAAAGGTGGGTAATGAACTTGGCAAACATAGAATTCATGTCAAGGATGCATGGCGTAGAATAAAACTGCAAAACATGAAGACAGGTGTGTGGTCCCAAGAGGAGTACCAGACTTTGTTTGATTTAGTGAACAAGGATCTGCGGATGCGGGCTTTGGAAGAAAAAAAATATTCCAAGCATGGGATGCTGCGAGATAATATTAAGTGGGAGGCAATCAGTGAGACTTTGGGCACCAGAACCAATCCTGTTTGTTGCCAGAAGTGGTATAACCAATTGGCTTCACCTTTGGTAGCTGATGGTCAGTGGGCTGATGTTGATGACTACCGCCTAGTTTACGCTCTCAACAGCTTGGATGCTTGTTGCATGGAAGAAGTTGATTGGGATGATCTGCTTGAGCATAGGTCTGGAGATGTATGTAAAAAGCGATGGAATCAAATGGTCAGACACATTGGTCAGTATGCGATGAAGTCATTTGCAGAACAAGTTGAAATTTTGTCAAAACGTTATTGTCCTGATGCGCTTGAAGCAAAGGAAGCCTGTGACAGTAAGCCAGTAGTCGAGTTTTGTGCTCAACTTAGAAGGATGATGCATCTACTGTGTTCTCTGGTGGTTGTGACAAGCAAGTTAAGAGTGGCCTTTGGCTGCGAACCAACCAGTGACCGTTACATACATGATGCACCCATAAAAGACGTTGCTTGGGATCCCGGAGGAATGAACTACTTAGTTATAATTAAAAACTATAGTTATAACCAAGATATTCGCCGATTTCTCCCCGAACTTGTAAGGAGCTATCAAATTTTTGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_6 Myb_DNA-binding

Protein Analysis

701

Amino Acids

80.19

Weight (kDa)

8.01

Isoelectric Point (pI)

38.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_6 PF13921 407 - 471 9.9e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 2024, 2043
AasI GACNNNNNNGTC 1 cut(s) 1746
AccB1I GGYRCC 1 cut(s) 1526
AccI GTMKAC 1 cut(s) 30
AciI CCGC 6 cut(s) 621, 997, 1254, 1438, 1444, 1621
AclI AACGTT 1 cut(s) 1798
AclWI GGATC 3 cut(s) 1440, 1991, 2004
AcsI RAATTY 7 cut(s) 98, 284, 745, 886, 1329, 1785, 2091
AcuI CTGAAG 1 cut(s) 1191
AfaI GTAC 7 cut(s) 63, 633, 918, 987, 1089, 1216, 1403
AfiI CCNNNNNNNGG 2 cut(s) 1152, 1476
AgsI TTSAA 4 cut(s) 229, 750, 1784, 1820
AjiI CACGTC 1 cut(s) 1250
AjnI CCWGG 1 cut(s) 1151
Alw21I GWGCWC 1 cut(s) 1867
Alw26I GTCTC 2 cut(s) 846, 1511
AlwI GGATC 3 cut(s) 1440, 1991, 2004
AlwNI CAGNNNCTG 1 cut(s) 1122
AoxI GGCC 3 cut(s) 174, 360, 1929
ApeKI GCWGC 6 cut(s) 67, 253, 439, 789, 1483, 1938
ApoI RAATTY 7 cut(s) 98, 284, 745, 886, 1329, 1785, 2091
AspLEI GCGC 1 cut(s) 1816
AspS9I GGNCC 4 cut(s) 174, 360, 1221, 1389
AsuC2I CCSGG 1 cut(s) 2001
AsuHPI GGTGA 5 cut(s) 635, 788, 1079, 1289, 1569
AvaII GGWCC 2 cut(s) 1221, 1389
BaeGI GKGCMC 1 cut(s) 1529
BamHI GGATCC 1 cut(s) 1996
BanI GGYRCC 1 cut(s) 1526
BanII GRGCYC 1 cut(s) 1186
BbsI GAAGAC 4 cut(s) 330, 611, 1020, 1382
Bbv12I GWGCWC 1 cut(s) 1867
BbvI GCAGC 6 cut(s) 79, 240, 426, 801, 1470, 1925
BccI CCATC 5 cut(s) 644, 680, 950, 1586, 1716
BcgI CGANNNNNNTGC 2 cut(s) 1844, 1878
BciT130I CCWGG 1 cut(s) 1153
BcnI CCSGG 1 cut(s) 2001
BcoDI GTCTC 2 cut(s) 846, 1511
BfaI CTAG 1 cut(s) 1625
BfmI CTRYAG 1 cut(s) 2035
BisI GCNGC 7 cut(s) 68, 254, 440, 790, 1254, 1484, 1939
BlsI GCNGC 7 cut(s) 69, 255, 441, 791, 1255, 1485, 1940
Bme1390I CCNGG 2 cut(s) 1153, 2001
Bme18I GGWCC 2 cut(s) 1221, 1389
BmgBI CACGTC 1 cut(s) 1250
BmgT120I GGNCC 4 cut(s) 174, 360, 1221, 1389
BmiI GGNNCC 5 cut(s) 175, 361, 1391, 1528, 1998
BmrFI CCNGG 2 cut(s) 1153, 2001
BpiI GAAGAC 4 cut(s) 330, 611, 1020, 1382
BpmI CTGGAG 5 cut(s) 684, 870, 1174, 1315, 1722
Bpu10I CCTNAGC 1 cut(s) 1266
BpuEI CTTGAG 2 cut(s) 789, 1709
BpuMI CCSGG 1 cut(s) 2001
BsaJI CCNNGG 2 cut(s) 1151, 1224
Bsc4I CCNNNNNNNGG 2 cut(s) 1152, 1476
Bse1I ACTGG 5 cut(s) 775, 853, 1298, 1847, 1950
Bse3DI GCAATG 2 cut(s) 148, 492
BseBI CCWGG 1 cut(s) 1153
BseDI CCNNGG 2 cut(s) 1151, 1224
BseGI GGATG 8 cut(s) 538, 553, 1348, 1446, 1485, 1654, 1684, 1884
BseLI CCNNNNNNNGG 2 cut(s) 1152, 1476
BseMI GCAATG 2 cut(s) 148, 492
BseMII CTCAG 2 cut(s) 457, 519
BseNI ACTGG 5 cut(s) 775, 853, 1298, 1847, 1950
BseRI GAGGAG 1 cut(s) 1412
BseSI GKGCMC 1 cut(s) 1529
BseXI GCAGC 6 cut(s) 79, 240, 426, 801, 1470, 1925
BseYI CCCAGC 1 cut(s) 1063
BshFI GGCC 3 cut(s) 176, 362, 1931
BshNI GGYRCC 1 cut(s) 1526
BsiHKAI GWGCWC 1 cut(s) 1867
BsiSI CCGG 1 cut(s) 2001
BslFI GGGAC 1 cut(s) 1375
BslI CCNNNNNNNGG 2 cut(s) 1152, 1476
BsmAI GTCTC 2 cut(s) 846, 1511
BsmBI CGTCTC 1 cut(s) 846
BsmFI GGGAC 1 cut(s) 1375
BsmI GAATGC 1 cut(s) 679
BsnI GGCC 3 cut(s) 176, 362, 1931
Bsp1286I GDGCHC 3 cut(s) 1186, 1529, 1867
Bsp1407I TGTACA 1 cut(s) 61
Bsp143I GATC 3 cut(s) 1432, 1681, 1996
BspACI CCGC 6 cut(s) 621, 997, 1254, 1438, 1444, 1621
BspANI GGCC 3 cut(s) 176, 362, 1931
BspCNI CTCAG 2 cut(s) 456, 520
BspHI TCATGA 1 cut(s) 714
BspLI GGNNCC 5 cut(s) 175, 361, 1391, 1528, 1998
BspPI GGATC 3 cut(s) 1440, 1991, 2004
BspT107I GGYRCC 1 cut(s) 1526
BsrDI GCAATG 2 cut(s) 148, 492
BsrGI TGTACA 1 cut(s) 61
BsrI ACTGG 5 cut(s) 775, 853, 1298, 1847, 1950
BssECI CCNNGG 2 cut(s) 1151, 1224
BssMI GATC 3 cut(s) 1432, 1681, 1996
BssT1I CCWWGG 1 cut(s) 1224
Bst2UI CCWGG 1 cut(s) 1153
Bst4CI ACNGT 7 cut(s) 35, 833, 951, 1124, 1841, 1893, 1958
Bst6I CTCTTC 2 cut(s) 506, 1224
BstAPI GCANNNNNTGC 1 cut(s) 1480
BstAUI TGTACA 1 cut(s) 61
BstC8I GCNNGC 2 cut(s) 258, 1446
BstDEI CTNAG 6 cut(s) 443, 528, 820, 1266, 1871, 2017
BstF5I GGATG 8 cut(s) 538, 553, 1348, 1446, 1485, 1654, 1684, 1884
BstHHI GCGC 1 cut(s) 1816
BstKTI GATC 3 cut(s) 1435, 1684, 1999
BstMAI GTCTC 2 cut(s) 846, 1511
BstMBI GATC 3 cut(s) 1432, 1681, 1996
BstMWI GCNNNNNNNGC 6 cut(s) 494, 795, 1262, 1480, 1820, 1829
BstNI CCWGG 1 cut(s) 1153
BstSCI CCNGG 2 cut(s) 1151, 1999
BstSFI CTRYAG 1 cut(s) 2035
BstSLI GKGCMC 1 cut(s) 1529
BstV1I GCAGC 6 cut(s) 79, 240, 426, 801, 1470, 1925
BstV2I GAAGAC 4 cut(s) 330, 611, 1020, 1382
BstX2I RGATCY 2 cut(s) 1432, 1996
BstYI RGATCY 2 cut(s) 1432, 1996
BsuRI GGCC 3 cut(s) 176, 362, 1931
BtgZI GCGATG 2 cut(s) 1735, 1772
BtrI CACGTC 1 cut(s) 1250
BtsCI GGATG 8 cut(s) 538, 553, 1348, 1446, 1485, 1654, 1684, 1884
BtsIMutI CAGTG 4 cut(s) 947, 1519, 1604, 1957
Cac8I GCNNGC 2 cut(s) 258, 1446
CaiI CAGNNNCTG 1 cut(s) 1122
CciI TCATGA 1 cut(s) 714
CfoI GCGC 1 cut(s) 1816
Cfr13I GGNCC 4 cut(s) 174, 360, 1221, 1389
Csp6I GTAC 7 cut(s) 62, 632, 917, 986, 1088, 1215, 1402
CviQI GTAC 7 cut(s) 62, 632, 917, 986, 1088, 1215, 1402
DdeI CTNAG 6 cut(s) 443, 528, 820, 1266, 1871, 2017
DpnI GATC 3 cut(s) 1434, 1683, 1998
DpnII GATC 3 cut(s) 1432, 1681, 1996
DrdI GACNNNNNNGTC 1 cut(s) 1746
DseDI GACNNNNNNGTC 1 cut(s) 1746
Eam1104I CTCTTC 2 cut(s) 506, 1224
EarI CTCTTC 2 cut(s) 506, 1224
Eco130I CCWWGG 1 cut(s) 1224
Eco24I GRGCYC 1 cut(s) 1186
Eco47I GGWCC 2 cut(s) 1221, 1389
Eco57I CTGAAG 1 cut(s) 1191
EcoRI GAATTC 2 cut(s) 745, 1329
EcoRII CCWGG 1 cut(s) 1151
EcoT14I CCWWGG 1 cut(s) 1224
EcoT22I ATGCAT 2 cut(s) 1348, 1887
EcoT38I GRGCYC 1 cut(s) 1186
ErhI CCWWGG 1 cut(s) 1224
Esp3I CGTCTC 1 cut(s) 846
FalI AAGNNNNNCTT 2 cut(s) 1005, 1037
FaqI GGGAC 1 cut(s) 1375
FauI CCCGC 1 cut(s) 1437
FauNDI CATATG 1 cut(s) 1188
FblI GTMKAC 1 cut(s) 30
Fnu4HI GCNGC 7 cut(s) 68, 254, 440, 790, 1254, 1484, 1939
FokI GGATG 8 cut(s) 545, 560, 1355, 1453, 1492, 1661, 1691, 1891
FriOI GRGCYC 1 cut(s) 1186
Fsp4HI GCNGC 7 cut(s) 68, 254, 440, 790, 1254, 1484, 1939
FspBI CTAG 1 cut(s) 1625
GlaI GCGC 1 cut(s) 1815
GluI GCNGC 7 cut(s) 68, 254, 440, 790, 1254, 1484, 1939
GsaI CCCAGC 1 cut(s) 1067
GsuI CTGGAG 5 cut(s) 684, 870, 1174, 1315, 1722
HaeIII GGCC 3 cut(s) 176, 362, 1931
HapII CCGG 1 cut(s) 2001
HhaI GCGC 1 cut(s) 1816
Hin6I GCGC 1 cut(s) 1814
HinP1I GCGC 1 cut(s) 1814
HincII GTYRAC 1 cut(s) 31
HindII GTYRAC 1 cut(s) 31
HinfI GANTC 3 cut(s) 626, 711, 1726
HpaII CCGG 1 cut(s) 2001
HphI GGTGA 5 cut(s) 635, 788, 1079, 1289, 1569
Hpy166II GTNNAC 3 cut(s) 31, 1426, 1630
Hpy188I TCNGA 8 cut(s) 74, 446, 529, 685, 1118, 1210, 1247, 1739
Hpy188III TCNNGA 5 cut(s) 715, 750, 806, 1701, 1808
Hpy8I GTNNAC 3 cut(s) 31, 1426, 1630
Hpy99I CGWCG 2 cut(s) 35, 833
HpyCH4III ACNGT 7 cut(s) 35, 833, 951, 1124, 1841, 1893, 1958
HpyCH4IV ACGT 4 cut(s) 1213, 1249, 1798, 1986
HpyCH4V TGCA 9 cut(s) 497, 763, 971, 1346, 1366, 1659, 1772, 1885, 1973
HpyF10VI GCNNNNNNNGC 6 cut(s) 494, 795, 1262, 1480, 1820, 1829
HpyF3I CTNAG 6 cut(s) 443, 528, 820, 1266, 1871, 2017
HpySE526I ACGT 4 cut(s) 1213, 1249, 1798, 1986
HspAI GCGC 1 cut(s) 1814
Kzo9I GATC 3 cut(s) 1432, 1681, 1996
LmnI GCTCC 1 cut(s) 2082
Lsp1109I GCAGC 6 cut(s) 79, 240, 426, 801, 1470, 1925
MaeI CTAG 1 cut(s) 1625
MaeII ACGT 4 cut(s) 1213, 1249, 1798, 1986
MaeIII GTNAC 6 cut(s) 643, 1067, 1835, 1909, 1952, 1958
MalI GATC 3 cut(s) 1434, 1683, 1998
MboI GATC 3 cut(s) 1432, 1681, 1996
MfeI CAATTG 2 cut(s) 1093, 1568
MflI RGATCY 2 cut(s) 1432, 1996
MhlI GDGCHC 3 cut(s) 1186, 1529, 1867
MmeI TCCRAC 2 cut(s) 280, 1106
Mph1103I ATGCAT 2 cut(s) 1348, 1887
MseI TTAA 5 cut(s) 840, 1040, 1497, 1922, 2028
MslI CAYNNNNRTG 2 cut(s) 684, 1082
MspA1I CMGCKG 3 cut(s) 253, 439, 1063
MspI CCGG 1 cut(s) 2001
MspR9I CCNGG 2 cut(s) 1153, 2001
MunI CAATTG 2 cut(s) 1093, 1568
Mva1269I GAATGC 1 cut(s) 679
MvaI CCWGG 1 cut(s) 1153
MwoI GCNNNNNNNGC 6 cut(s) 494, 795, 1262, 1480, 1820, 1829
NciI CCSGG 1 cut(s) 2001
NdeI CATATG 1 cut(s) 1188
NdeII GATC 3 cut(s) 1432, 1681, 1996
NlaIV GGNNCC 5 cut(s) 175, 361, 1391, 1528, 1998
NmuCI GTSAC 4 cut(s) 1067, 1835, 1909, 1952
NsiI ATGCAT 2 cut(s) 1348, 1887
PagI TCATGA 1 cut(s) 714
PctI GAATGC 1 cut(s) 679
PfeI GAWTC 3 cut(s) 626, 711, 1726
PfoI TCCNGGA 1 cut(s) 1999
PkrI GCNGC 7 cut(s) 69, 255, 441, 791, 1255, 1485, 1940
PsiI TTATAA 2 cut(s) 2024, 2043
Psp1406I AACGTT 1 cut(s) 1798
Psp6I CCWGG 1 cut(s) 1151
PspFI CCCAGC 1 cut(s) 1063
PspGI CCWGG 1 cut(s) 1151
PspN4I GGNNCC 5 cut(s) 175, 361, 1391, 1528, 1998
PspPI GGNCC 4 cut(s) 174, 360, 1221, 1389
PstNI CAGNNNCTG 1 cut(s) 1122
PsuI RGATCY 2 cut(s) 1432, 1996
PvuII CAGCTG 3 cut(s) 253, 439, 1063
RsaI GTAC 7 cut(s) 63, 633, 918, 987, 1089, 1216, 1403
RsaNI GTAC 7 cut(s) 62, 632, 917, 986, 1088, 1215, 1402
RseI CAYNNNNRTG 2 cut(s) 684, 1082
SalI GTCGAC 1 cut(s) 29
SaqAI TTAA 5 cut(s) 840, 1040, 1497, 1922, 2028
SatI GCNGC 7 cut(s) 68, 254, 440, 790, 1254, 1484, 1939
Sau3AI GATC 3 cut(s) 1432, 1681, 1996
Sau96I GGNCC 4 cut(s) 174, 360, 1221, 1389
ScrFI CCNGG 2 cut(s) 1153, 2001
SduI GDGCHC 3 cut(s) 1186, 1529, 1867
SfcI CTRYAG 1 cut(s) 2035
SinI GGWCC 2 cut(s) 1221, 1389
SmiMI CAYNNNNRTG 2 cut(s) 684, 1082
SmlI CTYRAG 2 cut(s) 804, 1688
SmoI CTYRAG 2 cut(s) 804, 1688
SsiI CCGC 6 cut(s) 621, 997, 1254, 1438, 1444, 1621
SspI AATATT 2 cut(s) 1466, 1495
SspMI CTAG 1 cut(s) 1625
StyD4I CCNGG 2 cut(s) 1151, 1999
StyI CCWWGG 1 cut(s) 1224
TaaI ACNGT 7 cut(s) 35, 833, 951, 1124, 1841, 1893, 1958
TaiI ACGT 4 cut(s) 1216, 1252, 1801, 1989
TaqI TCGA 6 cut(s) 30, 47, 233, 1180, 1260, 1854
TatI WGTACW 2 cut(s) 61, 916
TauI GCSGC 1 cut(s) 1256
TfiI GAWTC 3 cut(s) 626, 711, 1726
Tru1I TTAA 5 cut(s) 840, 1040, 1497, 1922, 2028
Tru9I TTAA 5 cut(s) 840, 1040, 1497, 1922, 2028
TscAI CASTG 4 cut(s) 954, 1519, 1604, 1957
TseFI GTSAC 4 cut(s) 1067, 1835, 1909, 1952
TseI GCWGC 6 cut(s) 67, 253, 439, 789, 1483, 1938
Tsp45I GTSAC 4 cut(s) 1067, 1835, 1909, 1952
TspRI CASTG 4 cut(s) 954, 1519, 1604, 1957
VpaK11BI GGWCC 2 cut(s) 1221, 1389
XapI RAATTY 7 cut(s) 98, 284, 745, 886, 1329, 1785, 2091
XmiI GTMKAC 1 cut(s) 30
XspI CTAG 1 cut(s) 1625
Zsp2I ATGCAT 2 cut(s) 1348, 1887
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.