pycom04g14680

Ferritin-4, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0003525
Physical Location & Seq
Reverse (-)
17507467 .. 17509891
2425 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 924 bp
ATGAAGGGCAACGCCTCTCACATTTCTTCACCATTCTCCAATTCCTCTGCAATTTTCAGTCCAAATTCTTGCTCAAAATCTCTGATTTCGAATCACCGGTTGGAGATACTCCGTTCGGAAATCGTATCGACGATGTCTCTGAGGTCCGTTTCTGCATTTTCGGTCCCATCCAAGCAACGGGACAATGGTGGTGCTGTTAGCACCCTCTTGTTCAGCTCAAAACTTGGATCACCCTCCTCCGCTCTGAACTTCAAGCCGCAGCGAAAAATCGAAAAGTTTTCGGTTTCTGCATCGAGCGGTGCAGTGGCGATGACCGGAGTGGTGTTTCAGCCGTTTGAGGAGGTGAAGAACGATGCTTTTGTTGTCCCTGTGGCTCCTCATGTCTCTCTTGCCCGTCAGCGTTATGCAAACGAGCCCGAAGCCGCCATAAACGAGCAGATCAATGTGGAGTACAATGTGTCGTATGTGTACCATGCACTGTTTGCGTACTTTGACAGGGACAATGTTGCTCTCAAGGGCCTTGCCAAGTTTTTCAAGGAATCGAGCGAGGAAGAAAGAGGACATGCCGAAAAGCTGATGGAATATCAGAATATGCGAGGTGGGAGAGTGACACTGCACTCCATAGTAGCGCCGCCTACGGAGTTTGATCATGTAGAAAAGGGAGATGCATTGTATGCTATGGAGTTAGCATTGTCTTTGGAGAAGCTGACAAATGAAAAACTCTTGAACTTGCATAAGGTGGTTGCAGACGAGAACAATGATGCCCAATTGACAGATTTTATCGAGAGCGAGTTTTTGGCTGAGCAGGTTGAAGCCATTAAGAAGATAGCTGACTATGTCACTCAGCTGAGAATGGTTGGAAAAGGCCATGGAGTGTGGCACTTTGACCAACAGCTCCTTCATGAGGGTGATGCTGCAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000041 GO:0000302 GO:0003006 GO:0003674 GO:0005488 GO:0005506 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006873 GO:0006875 GO:0006879 GO:0006880 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009735 GO:0009791 GO:0009908 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010043 GO:0015979 GO:0016020 GO:0019725 GO:0019904 GO:0022414 GO:0030001 GO:0030003 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0034357 GO:0042221 GO:0042493 GO:0042542 GO:0042592 GO:0042651 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046677 GO:0046872 GO:0046914 GO:0046916 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051235 GO:0051238 GO:0051641 GO:0051651 GO:0051704 GO:0051707 GO:0055035 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0061458 GO:0065007 GO:0065008 GO:0090567 GO:0097577 GO:0098771 GO:0099402 GO:1901700
KEGG Pathways
Metabolic & Signaling
ko04216 ko04217 ko04978 map04216 map04217 map04978
Pfam Domains
Protein Families
Ferritin

Protein Analysis

308

Amino Acids

33.96

Weight (kDa)

5.9

Isoelectric Point (pI)

43.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ferritin PF00210 141 - 285 6.2e-33 Ferritin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 796
AccBSI CCGCTC 2 cut(s) 242, 297
AciI CCGC 5 cut(s) 240, 257, 297, 423, 632
AclWI GGATC 1 cut(s) 235
AcsI RAATTY 1 cut(s) 64
AfaI GTAC 3 cut(s) 452, 470, 488
AfiI CCNNNNNNNGG 2 cut(s) 177, 904
AgeI ACCGGT 1 cut(s) 96
AgsI TTSAA 4 cut(s) 253, 535, 727, 812
AjuI GAANNNNNNNTTGG 4 cut(s) 83, 115, 882, 914
AluBI AGCT 6 cut(s) 216, 574, 706, 830, 847, 895
AluI AGCT 6 cut(s) 216, 574, 706, 830, 847, 895
Alw26I GTCTC 2 cut(s) 141, 388
AlwI GGATC 1 cut(s) 235
AoxI GGCC 2 cut(s) 517, 865
ApeKI GCWGC 2 cut(s) 259, 914
ApoI RAATTY 1 cut(s) 64
AsiGI ACCGGT 1 cut(s) 96
AspLEI GCGC 1 cut(s) 631
AspS9I GGNCC 3 cut(s) 144, 163, 517
AsuHPI GGTGA 5 cut(s) 21, 86, 222, 355, 920
AsuII TTCGAA 1 cut(s) 89
AvaII GGWCC 2 cut(s) 144, 163
BanII GRGCYC 1 cut(s) 417
BbvI GCAGC 2 cut(s) 271, 901
BccI CCATC 2 cut(s) 175, 571
BceAI ACGGC 1 cut(s) 316
BclI TGATCA 1 cut(s) 646
BcoDI GTCTC 2 cut(s) 141, 388
BfoI RGCGCY 1 cut(s) 632
BfuAI ACCTGC 1 cut(s) 796
BisI GCNGC 5 cut(s) 257, 260, 423, 632, 915
BlpI GCTNAGC 1 cut(s) 801
BlsI GCNGC 5 cut(s) 258, 261, 424, 633, 916
Bme18I GGWCC 2 cut(s) 144, 163
BmgT120I GGNCC 3 cut(s) 144, 163, 517
BmiI GGNNCC 2 cut(s) 165, 375
BmsI GCATC 5 cut(s) 299, 343, 655, 751, 901
Bpu1102I GCTNAGC 1 cut(s) 801
Bpu14I TTCGAA 1 cut(s) 89
BpuEI CTTGAG 1 cut(s) 497
BsaJI CCNNGG 1 cut(s) 868
BsaWI WCCGGW 2 cut(s) 96, 314
Bsc4I CCNNNNNNNGG 2 cut(s) 177, 904
Bse118I RCCGGY 1 cut(s) 96
BseDI CCNNGG 1 cut(s) 868
BseGI GGATG 1 cut(s) 167
BseLI CCNNNNNNNGG 2 cut(s) 177, 904
BseMII CTCAG 4 cut(s) 131, 792, 839, 857
BseRI GAGGAG 3 cut(s) 226, 353, 366
BseXI GCAGC 2 cut(s) 271, 901
BsgI GTGCAG 2 cut(s) 321, 599
BshFI GGCC 2 cut(s) 519, 867
BshTI ACCGGT 1 cut(s) 96
BsiSI CCGG 2 cut(s) 97, 315
BslFI GGGAC 4 cut(s) 149, 194, 350, 512
BslI CCNNNNNNNGG 2 cut(s) 177, 904
BsmAI GTCTC 2 cut(s) 141, 388
BsmFI GGGAC 4 cut(s) 149, 194, 350, 512
BsnI GGCC 2 cut(s) 519, 867
Bsp119I TTCGAA 1 cut(s) 89
Bsp1286I GDGCHC 1 cut(s) 417
Bsp143I GATC 3 cut(s) 227, 438, 646
Bsp1720I GCTNAGC 1 cut(s) 801
Bsp19I CCATGG 1 cut(s) 868
BspACI CCGC 5 cut(s) 240, 257, 297, 423, 632
BspANI GGCC 2 cut(s) 519, 867
BspCNI CTCAG 4 cut(s) 132, 793, 840, 856
BspHI TCATGA 1 cut(s) 901
BspLI GGNNCC 2 cut(s) 165, 375
BspMI ACCTGC 1 cut(s) 796
BspPI GGATC 1 cut(s) 235
BspT104I TTCGAA 1 cut(s) 89
BsrBI CCGCTC 2 cut(s) 242, 297
BsrFI RCCGGY 1 cut(s) 96
BssAI RCCGGY 1 cut(s) 96
BssECI CCNNGG 1 cut(s) 868
BssMI GATC 3 cut(s) 227, 438, 646
BssT1I CCWWGG 1 cut(s) 868
Bst4CI ACNGT 1 cut(s) 480
BstAPI GCANNNNNTGC 2 cut(s) 482, 674
BstBI TTCGAA 1 cut(s) 89
BstDEI CTNAG 4 cut(s) 140, 801, 843, 848
BstDSI CCRYGG 1 cut(s) 868
BstENI CCTNNNNNAGG 1 cut(s) 902
BstF5I GGATG 1 cut(s) 167
BstH2I RGCGCY 1 cut(s) 632
BstHHI GCGC 1 cut(s) 631
BstKTI GATC 3 cut(s) 230, 441, 649
BstMAI GTCTC 2 cut(s) 141, 388
BstMBI GATC 3 cut(s) 227, 438, 646
BstMWI GCNNNNNNNGC 2 cut(s) 482, 674
BstNSI RCATGY 1 cut(s) 566
BstV1I GCAGC 2 cut(s) 271, 901
BsuRI GGCC 2 cut(s) 519, 867
BtgI CCRYGG 1 cut(s) 868
BtgZI GCGATG 1 cut(s) 323
BtsCI GGATG 1 cut(s) 167
BtsI GCAGTG 2 cut(s) 309, 611
BtsIMutI CAGTG 3 cut(s) 309, 476, 611
BveI ACCTGC 1 cut(s) 796
CciI TCATGA 1 cut(s) 901
CfoI GCGC 1 cut(s) 631
Cfr10I RCCGGY 1 cut(s) 96
Cfr13I GGNCC 3 cut(s) 144, 163, 517
Csp6I GTAC 3 cut(s) 451, 469, 487
CspAI ACCGGT 1 cut(s) 96
CviAII CATG 6 cut(s) 380, 473, 563, 650, 869, 902
CviQI GTAC 3 cut(s) 451, 469, 487
DdeI CTNAG 4 cut(s) 140, 801, 843, 848
DpnI GATC 3 cut(s) 229, 440, 648
DpnII GATC 3 cut(s) 227, 438, 646
Eco130I CCWWGG 1 cut(s) 868
Eco24I GRGCYC 1 cut(s) 417
Eco47I GGWCC 2 cut(s) 144, 163
EcoNI CCTNNNNNAGG 1 cut(s) 902
EcoO109I RGGNCCY 1 cut(s) 517
EcoT14I CCWWGG 1 cut(s) 868
EcoT22I ATGCAT 1 cut(s) 670
EcoT38I GRGCYC 1 cut(s) 417
ErhI CCWWGG 1 cut(s) 868
FaeI CATG 6 cut(s) 383, 476, 566, 653, 872, 905
FaqI GGGAC 4 cut(s) 149, 194, 350, 512
FatI CATG 6 cut(s) 379, 472, 562, 649, 868, 901
FbaI TGATCA 1 cut(s) 646
Fnu4HI GCNGC 5 cut(s) 257, 260, 423, 632, 915
FokI GGATG 1 cut(s) 154
FriOI GRGCYC 1 cut(s) 417
Fsp4HI GCNGC 5 cut(s) 257, 260, 423, 632, 915
GlaI GCGC 1 cut(s) 630
GluI GCNGC 5 cut(s) 257, 260, 423, 632, 915
HaeII RGCGCY 1 cut(s) 632
HaeIII GGCC 2 cut(s) 519, 867
HapII CCGG 2 cut(s) 97, 315
HhaI GCGC 1 cut(s) 631
Hin1II CATG 6 cut(s) 383, 476, 566, 653, 872, 905
Hin6I GCGC 1 cut(s) 629
HinP1I GCGC 1 cut(s) 629
HinfI GANTC 2 cut(s) 91, 539
HpaII CCGG 2 cut(s) 97, 315
HphI GGTGA 5 cut(s) 21, 86, 222, 355, 920
Hpy166II GTNNAC 1 cut(s) 469
Hpy188I TCNGA 5 cut(s) 84, 118, 141, 246, 588
Hpy188III TCNNGA 3 cut(s) 724, 784, 902
Hpy8I GTNNAC 1 cut(s) 469
Hpy99I CGWCG 1 cut(s) 133
HpyAV CCTTC 1 cut(s) 908
HpyCH4III ACNGT 1 cut(s) 480
HpyF10VI GCNNNNNNNGC 2 cut(s) 482, 674
HpyF3I CTNAG 4 cut(s) 140, 801, 843, 848
Hsp92II CATG 6 cut(s) 383, 476, 566, 653, 872, 905
HspAI GCGC 1 cut(s) 629
Ksp22I TGATCA 1 cut(s) 646
Kzo9I GATC 3 cut(s) 227, 438, 646
LmnI GCTCC 2 cut(s) 379, 900
LpnPI CCDG 5 cut(s) 110, 328, 381, 481, 791
Lsp1109I GCAGC 2 cut(s) 271, 901
LweI GCATC 5 cut(s) 299, 343, 655, 751, 901
MaeIII GTNAC 2 cut(s) 607, 838
MalI GATC 3 cut(s) 229, 440, 648
MbiI CCGCTC 2 cut(s) 242, 297
MboI GATC 3 cut(s) 227, 438, 646
MboII GAAGA 4 cut(s) 18, 358, 563, 835
MfeI CAATTG 1 cut(s) 767
MhlI GDGCHC 1 cut(s) 417
MluCI AATT 5 cut(s) 40, 51, 64, 767, 919
MmeI TCCRAC 2 cut(s) 81, 838
Mph1103I ATGCAT 1 cut(s) 670
MseI TTAA 2 cut(s) 819, 922
MslI CAYNNNNRTG 1 cut(s) 906
MspA1I CMGCKG 1 cut(s) 847
MspI CCGG 2 cut(s) 97, 315
MunI CAATTG 1 cut(s) 767
MwoI GCNNNNNNNGC 2 cut(s) 482, 674
NcoI CCATGG 1 cut(s) 868
NdeII GATC 3 cut(s) 227, 438, 646
NlaIII CATG 6 cut(s) 383, 476, 566, 653, 872, 905
NlaIV GGNNCC 2 cut(s) 165, 375
NmuCI GTSAC 2 cut(s) 607, 838
NsiI ATGCAT 1 cut(s) 670
NspI RCATGY 1 cut(s) 566
NspV TTCGAA 1 cut(s) 89
PagI TCATGA 1 cut(s) 901
PfeI GAWTC 2 cut(s) 91, 539
PflFI GACNNNGTC 2 cut(s) 133, 836
PinAI ACCGGT 1 cut(s) 96
PkrI GCNGC 5 cut(s) 258, 261, 424, 633, 916
PspN4I GGNNCC 2 cut(s) 165, 375
PspPI GGNCC 3 cut(s) 144, 163, 517
PsyI GACNNNGTC 2 cut(s) 133, 836
PvuII CAGCTG 1 cut(s) 847
RsaI GTAC 3 cut(s) 452, 470, 488
RsaNI GTAC 3 cut(s) 451, 469, 487
RseI CAYNNNNRTG 1 cut(s) 906
SaqAI TTAA 2 cut(s) 819, 922
SatI GCNGC 5 cut(s) 257, 260, 423, 632, 915
Sau3AI GATC 3 cut(s) 227, 438, 646
Sau96I GGNCC 3 cut(s) 144, 163, 517
SduI GDGCHC 1 cut(s) 417
SfaNI GCATC 5 cut(s) 299, 343, 655, 751, 901
SfuI TTCGAA 1 cut(s) 89
SinI GGWCC 2 cut(s) 144, 163
SmiMI CAYNNNNRTG 1 cut(s) 906
SmlI CTYRAG 1 cut(s) 512
SmoI CTYRAG 1 cut(s) 512
Sse9I AATT 5 cut(s) 40, 51, 64, 767, 919
SsiI CCGC 5 cut(s) 240, 257, 297, 423, 632
StyI CCWWGG 1 cut(s) 868
TaaI ACNGT 1 cut(s) 480
TaqI TCGA 6 cut(s) 89, 128, 270, 293, 542, 783
TaqII GACCGA 1 cut(s) 151
TasI AATT 5 cut(s) 40, 51, 64, 767, 919
TatI WGTACW 1 cut(s) 450
TauI GCSGC 3 cut(s) 259, 425, 634
TfiI GAWTC 2 cut(s) 91, 539
Tru1I TTAA 2 cut(s) 819, 922
Tru9I TTAA 2 cut(s) 819, 922
TscAI CASTG 3 cut(s) 309, 483, 618
TseFI GTSAC 2 cut(s) 607, 838
TseI GCWGC 2 cut(s) 259, 914
Tsp45I GTSAC 2 cut(s) 607, 838
TspDTI ATGAA 3 cut(s) 17, 729, 890
TspGWI ACGGA 3 cut(s) 101, 136, 653
TspRI CASTG 3 cut(s) 309, 483, 618
Tth111I GACNNNGTC 2 cut(s) 133, 836
VpaK11BI GGWCC 2 cut(s) 144, 163
XagI CCTNNNNNAGG 1 cut(s) 902
XapI RAATTY 1 cut(s) 64
XceI RCATGY 1 cut(s) 566
Zsp2I ATGCAT 1 cut(s) 670
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.