Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0003055

Physical Location & Seq

Genomic Coordinates Reverse (-)

1731523 .. 1733955

Gene Structure 2433 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g01610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2433 bp

ATGCATTTTTCCATGGATTTGAGAAGGCTTTCAATCCCAAAATCCCATCTTTTTCTCTTCTCCCCCATTAACCGCGCGTGCGTGACCTGCACCGCCCAACAACGCCCGCAAGAACCTCCGCAACCGCCGCCATTGCAGCTTCCGGATCAACCGGAGCCGACCGATCAGAGTTTGCACAACTGGGTATTTTCTATTCTCTCAAAACCATATTTAGATTCTTCTAAATGCAAGGCTGTCGTACCCCTTTTGTCCCCTCTACAATTTGATCGATTGTTCTGTTCCATTAGCTCCAATGTGAACCCCAGAACAGCTCTCTATTTCTTCTATTTTGCTTCTGAATCTTTTAAGTTCCGGTTTACTGTTCGATCTTTTTGTGTTTTGGTTCGTCTGCTTGTTGGTTCGAATCTTGTGGCCCCTGCGAGATTGCTTTTGATCCGTTCGATTGATGGGAATGTGCCGGTTTCATATGCTAACCCCAGTCAAAGGCATATGGAGATAGCCATTGCCATGTTAGCGTTGAATACCGTGGCCGAACAAGGTGTTGGTGTTCAGGCGTTGGACTTGTTGATTCATGTCTACTGCACCCAATTTAAGAATATGGGTTTTGGTTTCGCGGTTGATGTGTTTATGTTTTTTTCTGGTAAGGGTGTCTTTCCGTCTTTGAAGACTTGTAATTTTTTGTTGAGTTCGTTAGTGAAGGCCAGCGAACTTCATAAGAGTTATCAAGTATTTGAAGTTATGTCTCGAGGTGTTTCTCCTGACATTTATTTGTTTACTACTGCGATTAATGCATTTTGTAAGGGAGGGAAGGTTGATGAAGCAATAGGTTTGCTATCAAAAATGGAAGGGCAGGGGGTTGCTCCAAATGTTGTTACATACAATAATGTTATTCATGGTCTCTGTAAGAGCAGAAGATTAGAGGAGGCCTTCCAGTTTAAGAAGAAGATGGTTGAAAACAATGTGAACCCGAGTCTTATAACATACAGTATACTCATTAATGGTTTGATTAAGCTGGAGAAGTTTTATGAGGCAAATTGTGTCTTGAAGGAAATGTGTAATAGGGGATTTCTCCCGAATGAGGTTGTTTATAACACATTGATTGATGGGTTTTGTAAAACGGGAAATATTAGTGGGGCACTAAAGACAAAGGATGATATGTTATCCCATGGGTTAACTCCCAATTCCGTTACTCTTAATTCTATACTGCAGGGATATTGTAAAACTAATCAGTTGGAGCATGCTGAGCAGATTCTAGACAAGATGCTATCCTGTGGTTTATCCATAAATCAAACTGTTTGTTTCTCAGTCATTCACTGTTTATGCATGAAATCTAGGTTCGATTCTGCTCTAAAGTTCACTATAGAAATGCTTTCAAGAAACTGTAGACCCAGCAATGGCTTGCTTACCACGTTGGTTAGTGGGCTTTGTAAAGATGGAAAACATTCCAAGGCAGTTGAACTTTGGTTTAGGCTATGTAACAAAGGATTTGCACCCAACACAGCGACCTCAAATGCTTTAATTCATGGACTTTGTGAATCTGGTAGCATGCAAGAAGTTGTTCTGCAACTCAAACCAATGCTAGGGAGAGTTTTGGTAATGGATAGAATCTCATACAACACACTTATCTCGGGTTGTTGCATGGAGGGAAAAGTGGAGGAAGGGTTTAAGCTTAAGAAAGAGATGGCTAAGCAAGGAATTGAACCAGATACTTATACTTATAATTTGCTAATGCATGGTCTATGTAATATAGGAAAAGTGGACGATGCAGTTAAACTTTGGGATGAGTTTGAAAATCAGGGTCTGGTTCCCAATGTTTATACATATGGGGTGATGATAGATGGGTACCGTAAAGCTGGCAGAGTGGATGAGGGTGAAAAGCTGTTCAGTAAGTTGGTAACTAAGAAAGTGGAGCTAAATTCTGTTGTTTACAATACACTAATCAGAGCATACAGCACAAATGGGAATATGGCGGCAGCCCTTGGTCTCCGCTTGGACATGAAAAACAAAGGCATTCAACCAACTTGTGCCACGTATTCTTCCCTTATAGATGGACTTTGCAATATTGGCAGTGTTGATGTTGCAAAATGCCTTCTAGATGAAATGAGGAATGAGGGTTTGTTGCCAGATGTTGTATGTTATACAGCACTAATTCATGGTTATTGTAAACTAGGACAAATGGATAAAGTAGGGAATATCTTGCTGGAGATGTCTTCATTTAACATTAAACCTAATAAGATTACCTACACTGTCATGATTGATGGGTACTGTAAACTAGGTAATATGGAAGAAGCAACTAGACTTCTATCTGAGATGATAAAGATGGGAGTTGTCCCAGACGCCATCACCTATAATGCATTAACTAATGGATTTTGTAAGGAAAGGAAGGTGGAAGAAGCTTTTGAAGTGTGTGATCACATGGCCAATAAGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

811

Amino Acids

90.15

Weight (kDa)

8.44

Isoelectric Point (pI)

34.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	219 - 267	3.2e-06	PPR repeat family
PPR_long	PF17177	235 - 332	3.4e-08	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	245 - 297	3.8e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	249 - 282	3.9e-10	PPR repeat
PPR_2	PF13041	253 - 301	5.9e-14	PPR repeat family
PPR_3	PF13812	277 - 333	3.1e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	285 - 317	3.2e-11	PPR repeat
PPR_2	PF13041	288 - 337	3.6e-18	PPR repeat family
PPR	PF01535	291 - 321	8.3e-07	PPR repeat
PPR_2	PF13041	332 - 372	8.7e-09	PPR repeat family
TPR_24	PF23276	347 - 451	2.7e-08	Fungal tetratrico peptide repeats
PPR_3	PF13812	347 - 405	1.5e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	354 - 386	4.2e-09	PPR repeat
PPR_2	PF13041	358 - 402	3.7e-12	PPR repeat family
PPR	PF01535	361 - 391	6.2e-06	PPR repeat
PPR_1	PF12854	390 - 421	4e-08	PPR repeat
PPR_2	PF13041	393 - 430	9e-08	PPR repeat family
PPR	PF01535	396 - 426	4.6e-06	PPR repeat
PPR_2	PF13041	469 - 511	1.3e-08	PPR repeat family
PPR_1	PF12854	532 - 561	2.5e-08	PPR repeat
PPR_2	PF13041	534 - 582	2.1e-18	PPR repeat family
PPR	PF01535	536 - 566	1.6e-07	PPR repeat
PPR_long	PF17177	549 - 655	1.8e-06	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	556 - 614	4.1e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	565 - 595	3.1e-11	PPR repeat
PPR_2	PF13041	572 - 616	4.2e-14	PPR repeat family
PPR_1	PF12854	600 - 630	3.1e-08	PPR repeat
PPR_3	PF13812	626 - 683	7.2e-10	Pentatricopeptide repeat domain
PPR_long	PF17177	627 - 742	1.2e-08	Pentacotripeptide-repeat region of PRORP
TPR_24	PF23276	629 - 728	1.3e-07	Fungal tetratrico peptide repeats
PPR_2	PF13041	639 - 687	4.9e-16	PPR repeat family
PPR_1	PF12854	669 - 702	1.1e-09	PPR repeat
PPR_2	PF13041	681 - 722	2e-10	PPR repeat family
PPR_3	PF13812	697 - 755	2.2e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	705 - 728	1.3e-07	PPR repeat
PPR_2	PF13041	708 - 757	3e-17	PPR repeat family
PPR	PF01535	711 - 741	8.9e-06	PPR repeat
PPR_3	PF13812	732 - 788	1.3e-08	Pentatricopeptide repeat domain
PPR_long	PF17177	732 - 808	2.7e-07	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	740 - 771	5.5e-12	PPR repeat
PPR	PF01535	746 - 776	3.4e-10	PPR repeat
PPR_2	PF13041	746 - 792	1.8e-16	PPR repeat family
PPR_1	PF12854	774 - 806	5.2e-11	PPR repeat
PPR_2	PF13041	778 - 809	6.7e-06	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003055)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19440 AT4G19440 AT4G19440 AT4G19440
fragaria_vesca	FvH4_4g10410 FvH4_4g10410 FvH4_4g10440 FvH4_5g24430 FvH4_5g24430 FvH4_5g24430 FvH4_5g24430
malus_domestica	MD06G1022200.v1.1
prunus_persica	Prupe.3G018200_v2.0.a1
pyrus_communis	pycom06g01610
rosa_chinensis	RchiOBHm_Chr4g0405931 RchiOBHm_Chr7g0214821 RchiOBHm_Chr7g0219861
rosa_laevigata	RLG00000002716 RLG00000008810
rosa_multiflora	Rmu_sc0002308.1_g000021 Rmu_sc0019702.1_g000004 Rmu_ssc0000087.1_g000071
rosa_roxburghii	Rroxscaffold_3G00244980 Rroxscaffold_5G00350670
rosa_rugosa	Rorug04G0064100 Rorug07G0147600 Rorug07G0147700 Rorug07G0147800
rosa_samantha	Rh4AG134900 Rh4BG130500 Rh4CG142300 Rh4DG129200 Rh7AG284500 Rh7BG275300 Rh7CG303700 Rh7DG287900
rosa_wichuraiana	Rw4G010980 Rw7G024260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	977, 1089, 1719
Acc36I	ACCTGC	1 cut(s)	95
Acc65I	GGTACC	1 cut(s)	1842
AccB1I	GGYRCC	1 cut(s)	1842
AccI	GTMKAC	3 cut(s)	576, 988, 1384
AccII	CGCG	3 cut(s)	75, 77, 614
AccIII	TCCGGA	1 cut(s)	142
AciI	CCGC	9 cut(s)	73, 93, 107, 119, 125, 128, 614, 1970, 1987
AclWI	GGATC	2 cut(s)	153, 427
AcoI	YGGCCR	2 cut(s)	528, 2418
AcsI	RAATTY	1 cut(s)	1915
AcyI	GRCGYC	1 cut(s)	2337
AfaI	GTAC	3 cut(s)	240, 1844, 2264
AfiI	CCNNNNNNNGG	4 cut(s)	483, 1078, 1394, 1580
AflII	CTTAAG	1 cut(s)	1670
AjuI	GAANNNNNNNTTGG	2 cut(s)	525, 557
AluBI	AGCT	9 cut(s)	139, 288, 311, 1012, 1669, 1853, 1879, 1912, 2396
AluI	AGCT	9 cut(s)	139, 288, 311, 1012, 1669, 1853, 1879, 1912, 2396
Alw26I	GTCTC	3 cut(s)	747, 902, 1988
AlwI	GGATC	2 cut(s)	153, 427
AlwNI	CAGNNNCTG	1 cut(s)	1801
Ama87I	CYCGRG	3 cut(s)	744, 967, 1627
Aor13HI	TCCGGA	1 cut(s)	142
AoxI	GGCC	5 cut(s)	411, 528, 699, 924, 2418
ApeKI	GCWGC	2 cut(s)	136, 1973
ApoI	RAATTY	1 cut(s)	1915
AseI	ATTAAT	2 cut(s)	786, 996
Asp700I	GAANNNNTTC	3 cut(s)	28, 1441, 1557
Asp718I	GGTACC	1 cut(s)	1842
AspLEI	GCGC	1 cut(s)	77
AspS9I	GGNCC	1 cut(s)	412
AsuHPI	GGTGA	3 cut(s)	1840, 1883, 2335
AsuII	TTCGAA	1 cut(s)	401
AvaI	CYCGRG	3 cut(s)	744, 967, 1627
BaeGI	GKGCMC	1 cut(s)	1138
BalI	TGGCCA	1 cut(s)	2420
BanI	GGYRCC	1 cut(s)	1842
BbsI	GAAGAC	2 cut(s)	671, 2202
BbvI	GCAGC	2 cut(s)	148, 1985
BcgI	CGANNNNNNTGC	2 cut(s)	217, 251
BclI	TGATCA	1 cut(s)	2410
BcoDI	GTCTC	3 cut(s)	747, 902, 1988
BfaI	CTAG	7 cut(s)	1253, 1332, 1580, 2093, 2168, 2273, 2295
BfmI	CTRYAG	3 cut(s)	1205, 1359, 1381
BfrI	CTTAAG	1 cut(s)	1670
BfuAI	ACCTGC	1 cut(s)	95
BisI	GCNGC	4 cut(s)	128, 137, 1971, 1974
BlpI	GCTNAGC	2 cut(s)	1242, 1686
BlsI	GCNGC	4 cut(s)	129, 138, 1972, 1975
BmeT110I	CYCGRG	3 cut(s)	744, 967, 1627
BmgT120I	GGNCC	1 cut(s)	412
BmiI	GGNNCC	4 cut(s)	156, 414, 1806, 1844
BmrI	ACTGGG	2 cut(s)	190, 471
BmsI	GCATC	2 cut(s)	1251, 1753
BmuI	ACTGGG	2 cut(s)	190, 471
BpiI	GAAGAC	2 cut(s)	671, 2202
BpmI	CTGGAG	2 cut(s)	1034, 2222
Bpu1102I	GCTNAGC	2 cut(s)	1242, 1686
Bpu14I	TTCGAA	1 cut(s)	401
Bsa29I	ATCGAT	1 cut(s)	268
BsaAI	YACGTR	1 cut(s)	2031
BsaHI	GRCGYC	1 cut(s)	2337
BsaI	GGTCTC	2 cut(s)	902, 1988
BsaJI	CCNNGG	5 cut(s)	12, 525, 1165, 1446, 1978
BsaWI	WCCGGW	3 cut(s)	142, 151, 351
BsaXI	ACNNNNNCTCC	4 cut(s)	795, 825, 1646, 1676
Bsc4I	CCNNNNNNNGG	4 cut(s)	483, 1078, 1394, 1580
Bse118I	RCCGGY	1 cut(s)	457
Bse1I	ACTGG	3 cut(s)	185, 477, 931
Bse3DI	GCAATG	3 cut(s)	131, 501, 1399
BseAI	TCCGGA	1 cut(s)	142
BseCI	ATCGAT	1 cut(s)	268
BseDI	CCNNGG	5 cut(s)	12, 525, 1165, 1446, 1978
BseGI	GGATG	3 cut(s)	1156, 1786, 1870
BseLI	CCNNNNNNNGG	4 cut(s)	483, 1078, 1394, 1580
BseMI	GCAATG	3 cut(s)	131, 501, 1399
BseMII	CTCAG	3 cut(s)	1233, 1317, 2298
BseNI	ACTGG	3 cut(s)	185, 477, 931
BseRI	GAGGAG	1 cut(s)	935
BseSI	GKGCMC	1 cut(s)	1138
BseXI	GCAGC	2 cut(s)	148, 1985
BseYI	CCCAGC	1 cut(s)	1388
BsgI	GTGCAG	2 cut(s)	73, 565
Bsh1236I	CGCG	3 cut(s)	75, 77, 614
Bsh1285I	CGRYCG	1 cut(s)	162
BshFI	GGCC	5 cut(s)	413, 530, 701, 926, 2420
BshNI	GGYRCC	1 cut(s)	1842
BshVI	ATCGAT	1 cut(s)	268
BsiEI	CGRYCG	1 cut(s)	162
BsiHKCI	CYCGRG	3 cut(s)	744, 967, 1627
BsiSI	CCGG	4 cut(s)	143, 152, 352, 458
BslFI	GGGAC	2 cut(s)	235, 2315
BslI	CCNNNNNNNGG	4 cut(s)	483, 1078, 1394, 1580
BsmAI	GTCTC	3 cut(s)	747, 902, 1988
BsmFI	GGGAC	2 cut(s)	235, 2315
BsmI	GAATGC	1 cut(s)	2010
BsnI	GGCC	5 cut(s)	413, 530, 701, 926, 2420
Bso31I	GGTCTC	2 cut(s)	902, 1988
BsoBI	CYCGRG	3 cut(s)	744, 967, 1627
Bsp119I	TTCGAA	1 cut(s)	401
Bsp1286I	GDGCHC	1 cut(s)	1138
Bsp13I	TCCGGA	1 cut(s)	142
Bsp143I	GATC	6 cut(s)	145, 163, 265, 365, 432, 2410
Bsp1720I	GCTNAGC	2 cut(s)	1242, 1686
Bsp19I	CCATGG	2 cut(s)	12, 1165
BspACI	CCGC	9 cut(s)	73, 93, 107, 119, 125, 128, 614, 1970, 1987
BspANI	GGCC	5 cut(s)	413, 530, 701, 926, 2420
BspCNI	CTCAG	3 cut(s)	1234, 1316, 2299
BspDI	ATCGAT	1 cut(s)	268
BspEI	TCCGGA	1 cut(s)	142
BspFNI	CGCG	3 cut(s)	75, 77, 614
BspHI	TCATGA	1 cut(s)	2250
BspLI	GGNNCC	4 cut(s)	156, 414, 1806, 1844
BspMAI	CTGCAG	1 cut(s)	1209
BspMI	ACCTGC	1 cut(s)	95
BspPI	GGATC	2 cut(s)	153, 427
BspT104I	TTCGAA	1 cut(s)	401
BspT107I	GGYRCC	1 cut(s)	1842
BspTI	CTTAAG	1 cut(s)	1670
BspTNI	GGTCTC	2 cut(s)	902, 1988
BsrDI	GCAATG	3 cut(s)	131, 501, 1399
BsrFI	RCCGGY	1 cut(s)	457
BsrI	ACTGG	3 cut(s)	185, 477, 931
BssAI	RCCGGY	1 cut(s)	457
BssECI	CCNNGG	5 cut(s)	12, 525, 1165, 1446, 1978
BssMI	GATC	6 cut(s)	145, 163, 265, 365, 432, 2410
BssNAI	GTATAC	1 cut(s)	989
BssNI	GRCGYC	1 cut(s)	2337
BssT1I	CCWWGG	4 cut(s)	12, 1165, 1446, 1978
Bst1107I	GTATAC	1 cut(s)	989
Bst4CI	ACNGT	9 cut(s)	361, 526, 986, 1294, 1316, 1382, 1847, 2248, 2267
Bst6I	CTCTTC	1 cut(s)	62
BstACI	GRCGYC	1 cut(s)	2337
BstAFI	CTTAAG	1 cut(s)	1670
BstBAI	YACGTR	1 cut(s)	2031
BstBI	TTCGAA	1 cut(s)	401
BstC8I	GCNNGC	7 cut(s)	79, 107, 703, 1239, 1400, 1547, 1855
BstDEI	CTNAG	5 cut(s)	1242, 1303, 1686, 1899, 2307
BstDSI	CCRYGG	3 cut(s)	12, 525, 1165
BstF5I	GGATG	3 cut(s)	1156, 1786, 1870
BstFNI	CGCG	3 cut(s)	75, 77, 614
BstHHI	GCGC	1 cut(s)	77
BstKTI	GATC	6 cut(s)	148, 166, 268, 368, 435, 2413
BstMAI	GTCTC	3 cut(s)	747, 902, 1988
BstMBI	GATC	6 cut(s)	145, 163, 265, 365, 432, 2410
BstMCI	CGRYCG	1 cut(s)	162
BstMWI	GCNNNNNNNGC	8 cut(s)	87, 127, 133, 136, 512, 788, 1243, 2064
BstNSI	RCATGY	2 cut(s)	1241, 1549
BstSFI	CTRYAG	3 cut(s)	1205, 1359, 1381
BstSLI	GKGCMC	1 cut(s)	1138
BstUI	CGCG	3 cut(s)	75, 77, 614
BstV1I	GCAGC	2 cut(s)	148, 1985
BstV2I	GAAGAC	2 cut(s)	671, 2202
BstZ17I	GTATAC	1 cut(s)	989
Bsu15I	ATCGAT	1 cut(s)	268
BsuRI	GGCC	5 cut(s)	413, 530, 701, 926, 2420
BsuTUI	ATCGAT	1 cut(s)	268
BtgI	CCRYGG	3 cut(s)	12, 525, 1165
BtsCI	GGATG	3 cut(s)	1156, 1786, 1870
BtsI	GCAGTG	1 cut(s)	2074
BtsIMutI	CAGTG	3 cut(s)	1312, 2074, 2244
BveI	ACCTGC	1 cut(s)	95
Cac8I	GCNNGC	7 cut(s)	79, 107, 703, 1239, 1400, 1547, 1855
CaiI	CAGNNNCTG	1 cut(s)	1801
CciI	TCATGA	1 cut(s)	2250
CfoI	GCGC	1 cut(s)	77
Cfr10I	RCCGGY	1 cut(s)	457
Cfr13I	GGNCC	1 cut(s)	412
ClaI	ATCGAT	1 cut(s)	268
CseI	GACGC	1 cut(s)	2345
Csp6I	GTAC	3 cut(s)	239, 1843, 2263
CviQI	GTAC	3 cut(s)	239, 1843, 2263
DdeI	CTNAG	5 cut(s)	1242, 1303, 1686, 1899, 2307
DpnI	GATC	6 cut(s)	147, 165, 267, 367, 434, 2412
DpnII	GATC	6 cut(s)	145, 163, 265, 365, 432, 2410
EaeI	YGGCCR	2 cut(s)	528, 2418
Eam1104I	CTCTTC	1 cut(s)	62
EarI	CTCTTC	1 cut(s)	62
Eco130I	CCWWGG	4 cut(s)	12, 1165, 1446, 1978
Eco147I	AGGCCT	1 cut(s)	926
Eco31I	GGTCTC	2 cut(s)	902, 1988
Eco88I	CYCGRG	3 cut(s)	744, 967, 1627
EcoT14I	CCWWGG	4 cut(s)	12, 1165, 1446, 1978
EcoT22I	ATGCAT	5 cut(s)	6, 793, 1325, 1734, 2356
ErhI	CCWWGG	4 cut(s)	12, 1165, 1446, 1978
FalI	AAGNNNNNCTT	2 cut(s)	635, 667
FaqI	GGGAC	2 cut(s)	235, 2315
FauI	CCCGC	1 cut(s)	114
FauNDI	CATATG	3 cut(s)	466, 489, 1822
FbaI	TGATCA	1 cut(s)	2410
FblI	GTMKAC	3 cut(s)	576, 988, 1384
Fnu4HI	GCNGC	4 cut(s)	128, 137, 1971, 1974
FokI	GGATG	3 cut(s)	1163, 1793, 1877
Fsp4HI	GCNGC	4 cut(s)	128, 137, 1971, 1974
FspBI	CTAG	7 cut(s)	1253, 1332, 1580, 2093, 2168, 2273, 2295
GlaI	GCGC	1 cut(s)	76
GluI	GCNGC	4 cut(s)	128, 137, 1971, 1974
GsaI	CCCAGC	1 cut(s)	1392
GsuI	CTGGAG	2 cut(s)	1034, 2222
HaeIII	GGCC	5 cut(s)	413, 530, 701, 926, 2420
HapII	CCGG	4 cut(s)	143, 152, 352, 458
HgaI	GACGC	1 cut(s)	2345
HhaI	GCGC	1 cut(s)	77
Hin1I	GRCGYC	1 cut(s)	2337
Hin6I	GCGC	1 cut(s)	75
HinP1I	GCGC	1 cut(s)	75
HincII	GTYRAC	1 cut(s)	1173
HindII	GTYRAC	1 cut(s)	1173
HindIII	AAGCTT	2 cut(s)	1667, 2394
HinfI	GANTC	9 cut(s)	215, 338, 403, 568, 970, 1249, 1340, 1535, 1605
HpaI	GTTAAC	1 cut(s)	1173
HpaII	CCGG	4 cut(s)	143, 152, 352, 458
HphI	GGTGA	3 cut(s)	1840, 1883, 2335
Hpy188I	TCNGA	4 cut(s)	168, 337, 1943, 2308
Hpy188III	TCNNGA	9 cut(s)	143, 744, 758, 1042, 1072, 1253, 1374, 2093, 2251
HpyAV	CCTTC	9 cut(s)	18, 691, 802, 839, 937, 1039, 1652, 2099, 2377
HpyCH4III	ACNGT	9 cut(s)	361, 526, 986, 1294, 1316, 1382, 1847, 2248, 2267
HpyCH4IV	ACGT	2 cut(s)	1409, 2030
HpyF10VI	GCNNNNNNNGC	8 cut(s)	87, 127, 133, 136, 512, 788, 1243, 2064
HpyF3I	CTNAG	5 cut(s)	1242, 1303, 1686, 1899, 2307
HpySE526I	ACGT	2 cut(s)	1409, 2030
Hsp92I	GRCGYC	1 cut(s)	2337
HspAI	GCGC	1 cut(s)	75
Kpn2I	TCCGGA	1 cut(s)	142
KpnI	GGTACC	1 cut(s)	1846
Ksp22I	TGATCA	1 cut(s)	2410
KspAI	GTTAAC	1 cut(s)	1173
Kzo9I	GATC	6 cut(s)	145, 163, 265, 365, 432, 2410
LmnI	GCTCC	5 cut(s)	154, 293, 865, 1234, 1909
Lsp1109I	GCAGC	2 cut(s)	148, 1985
LweI	GCATC	2 cut(s)	1251, 1753
MaeI	CTAG	7 cut(s)	1253, 1332, 1580, 2093, 2168, 2273, 2295
MaeII	ACGT	2 cut(s)	1409, 2030
MaeIII	GTNAC	5 cut(s)	82, 871, 1186, 1475, 1894
MalI	GATC	6 cut(s)	147, 165, 267, 367, 434, 2412
MboI	GATC	6 cut(s)	145, 163, 265, 365, 432, 2410
MhlI	GDGCHC	1 cut(s)	1138
MlsI	TGGCCA	1 cut(s)	2420
MluNI	TGGCCA	1 cut(s)	2420
MlyI	GAGTC	1 cut(s)	979
MmeI	TCCRAC	2 cut(s)	537, 1212
Mox20I	TGGCCA	1 cut(s)	2420
Mph1103I	ATGCAT	5 cut(s)	6, 793, 1325, 1734, 2356
MroI	TCCGGA	1 cut(s)	142
MroXI	GAANNNNTTC	3 cut(s)	28, 1441, 1557
MscI	TGGCCA	1 cut(s)	2420
MslI	CAYNNNNRTG	2 cut(s)	506, 2249
Msp20I	TGGCCA	1 cut(s)	2420
MspCI	CTTAAG	1 cut(s)	1670
MspI	CCGG	4 cut(s)	143, 152, 352, 458
Mva1269I	GAATGC	1 cut(s)	2010
MvnI	CGCG	3 cut(s)	75, 77, 614
MwoI	GCNNNNNNNGC	8 cut(s)	87, 127, 133, 136, 512, 788, 1243, 2064
NcoI	CCATGG	2 cut(s)	12, 1165
NdeI	CATATG	3 cut(s)	466, 489, 1822
NdeII	GATC	6 cut(s)	145, 163, 265, 365, 432, 2410
NlaIV	GGNNCC	4 cut(s)	156, 414, 1806, 1844
NmuCI	GTSAC	1 cut(s)	82
NsiI	ATGCAT	5 cut(s)	6, 793, 1325, 1734, 2356
NspI	RCATGY	2 cut(s)	1241, 1549
NspV	TTCGAA	1 cut(s)	401
PaeI	GCATGC	2 cut(s)	1241, 1549
PaeR7I	CTCGAG	1 cut(s)	744
PagI	TCATGA	1 cut(s)	2250
PceI	AGGCCT	1 cut(s)	926
PctI	GAATGC	1 cut(s)	2010
PdmI	GAANNNNTTC	3 cut(s)	28, 1441, 1557
PfeI	GAWTC	8 cut(s)	215, 338, 403, 568, 1249, 1340, 1535, 1605
PkrI	GCNGC	4 cut(s)	129, 138, 1972, 1975
PleI	GAGTC	1 cut(s)	978
PpsI	GAGTC	1 cut(s)	978
Ppu21I	YACGTR	1 cut(s)	2031
PshBI	ATTAAT	2 cut(s)	786, 996
PsiI	TTATAA	3 cut(s)	977, 1089, 1719
PspFI	CCCAGC	1 cut(s)	1388
PspN4I	GGNNCC	4 cut(s)	156, 414, 1806, 1844
PspPI	GGNCC	1 cut(s)	412
PstI	CTGCAG	1 cut(s)	1209
PstNI	CAGNNNCTG	1 cut(s)	1801
RsaI	GTAC	3 cut(s)	240, 1844, 2264
RsaNI	GTAC	3 cut(s)	239, 1843, 2263
RseI	CAYNNNNRTG	2 cut(s)	506, 2249
SatI	GCNGC	4 cut(s)	128, 137, 1971, 1974
Sau3AI	GATC	6 cut(s)	145, 163, 265, 365, 432, 2410
Sau96I	GGNCC	1 cut(s)	412
SchI	GAGTC	1 cut(s)	979
SduI	GDGCHC	1 cut(s)	1138
SfaNI	GCATC	2 cut(s)	1251, 1753
SfcI	CTRYAG	3 cut(s)	1205, 1359, 1381
Sfr274I	CTCGAG	1 cut(s)	744
SfuI	TTCGAA	1 cut(s)	401
SlaI	CTCGAG	1 cut(s)	744
SmiMI	CAYNNNNRTG	2 cut(s)	506, 2249
SmlI	CTYRAG	2 cut(s)	744, 1670
SmoI	CTYRAG	2 cut(s)	744, 1670
SphI	GCATGC	2 cut(s)	1241, 1549
SseBI	AGGCCT	1 cut(s)	926
SsiI	CCGC	9 cut(s)	73, 93, 107, 119, 125, 128, 614, 1970, 1987
SspI	AATATT	2 cut(s)	1126, 2062
SspMI	CTAG	7 cut(s)	1253, 1332, 1580, 2093, 2168, 2273, 2295
StuI	AGGCCT	1 cut(s)	926
StyI	CCWWGG	4 cut(s)	12, 1165, 1446, 1978
TaaI	ACNGT	9 cut(s)	361, 526, 986, 1294, 1316, 1382, 1847, 2248, 2267
TaiI	ACGT	2 cut(s)	1412, 2033
TaqI	TCGA	6 cut(s)	268, 364, 401, 440, 745, 1338
TaqII	GACCGA	1 cut(s)	176
TauI	GCSGC	2 cut(s)	130, 1973
TfiI	GAWTC	8 cut(s)	215, 338, 403, 568, 1249, 1340, 1535, 1605
TscAI	CASTG	3 cut(s)	1319, 2074, 2251
TseFI	GTSAC	1 cut(s)	82
TseI	GCWGC	2 cut(s)	136, 1973
Tsp45I	GTSAC	1 cut(s)	82
TspGWI	ACGGA	3 cut(s)	425, 645, 1174
TspRI	CASTG	3 cut(s)	1319, 2074, 2251
Vha464I	CTTAAG	1 cut(s)	1670
VspI	ATTAAT	2 cut(s)	786, 996
XapI	RAATTY	1 cut(s)	1915
XbaI	TCTAGA	2 cut(s)	1252, 2092
XceI	RCATGY	2 cut(s)	1241, 1549
XhoI	CTCGAG	1 cut(s)	744
XmiI	GTMKAC	3 cut(s)	576, 988, 1384
XmnI	GAANNNNTTC	3 cut(s)	28, 1441, 1557
XspI	CTAG	7 cut(s)	1253, 1332, 1580, 2093, 2168, 2273, 2295
Zsp2I	ATGCAT	5 cut(s)	6, 793, 1325, 1734, 2356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.