Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0003055

Physical Location & Seq

Genomic Coordinates Forward (+)

39750472 .. 39752937

Gene Structure 2466 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008810

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2466 bp

ATGGAGCTGAGAAGGGTTTCAATCTCGAAACCTTGCTCTTTCTTAATCAAACGCCCATTAAGCTGCGTCCCGCGTCCTCAGCCTCCGCCGCCGCCGCCGCCTCCGAATAACCAGAGATTACTTGACCGGGTATCCTCTCTTCTCTCAAACTCATCTTTCAAGTACCCTCAATGTAGATCTCTCATATCCCTCTTGTCCCCTCATGAATTCGATGCCCTCTTCTATTCCGTCGCCACTTCCCCCTCCTCCAATGTCAACCCCAAAACTGCTCTCCGTTTCTTTCACTTGGCTTCTAAAGCTTTTAACTTCCATTTTACCCTCGCTTCTTATTGCCTTTTGGTTCGTGTACTAATTCTTTCCAATCTTAACTCGCCTGCGAGATTGCTTTTGATCCGCTTGATTGATGGCAATGTGCAAGCTTTGTATTCTCTCCCGCCCACTGATAGGCATATTGAGATATCCATGGCTATGTCTCACTTCAAAACCGCCTCCGAAAGAGCTGCTGTGCTTCAGGCGTTGGATATGTTGATTCATCTTTACTGTACTCAGTTCAAGGATTTGGGTTTTTGTTCTGCCGTTCATGTTTTCGAGTTTTTCTCTAATAAGGCTATGTTTCCGTCCCTCAAGACTTGCCATTTTTTGTTGAATTCTTTAGTCAAGGCTGACCAACTCGATAAGAGCTACCGTGTGTTTGAAGTTCTGTCTCGTGGTGTTTCTCCAGATGTTTACTTGTTTACTACTGCAATTCAAGCTTTTTGTAAGGGAGGGAAGGCTGATGATGCAATACGTTTGTTCTCTAAAATGGAGGCACTTGGCATTGCTCCAAATGTTGTTACTTACAACAATGTTATTCACGGGTTATGTAAGAGCAGAAGATTAGAGGAGGCTTTCCAATTCAAGGACAAGATGGTACAAAACAATGTGAATCCCAGTCTTACAACATATGGTGTGCTCCTTAATGGTTTGATTAAGCTGGAGAAGTTTGACGATGCAAATCGTGTTTTGAAGGAAATGTATAGTAAGGGATTTGTCCCCAACGAGGTTATCTATAACATATTGATTGACGGCTATTGTAAAACGGGAAGTACTAGTGAGGCATTGAAGTTAAGGGATGAAATGTTATCCAATGGGGTAACTCCAAATTCTGTTACCATTAACTCGCTACTGCAGGGATTTTGTAAAAGTAACCACTTTGAACATGCTGAGCAGGTCTTAGATAAGCTGCTATCCAGTGGTTCATCTGTAGACCAAGTCGTTTGTTTCTCAGTCATTCACTCGTTATGCAAGAACTCTAGGTTTGATTCTGCACTGAAATTCACAACTGAAATGCTATTAAGAAACTTCAGGCCCAGCGATAACTTGCTTACAACATTGGTTGTTGGGCTCTGTAGAGATGGAAAGCATTCTGAGGCATCTCAGCTTTGGTTTAGGCTATGGGAGAAAGGGTTTGCAGCCAACACAGTGACCTCAAATGCTCTAATTTATGGAGTTTGTGAATCTGGTAGCATGCAAGAGGTTGCTAGGCTACTCAAGGAAATGGTAAAGAGAGGCTTGGTATTGGATAGGATCTCATGCAACACACTCATCTTGGGTTGGTGCAAGGAGGGAAAAGTGGACGAAGGTTTTAAGATTAGGGACTGGATGGGTAAGAAAGGAATTTTGCCAGACACATATACTTACAATTTGCTAATGCATGGTCTATGTAATATGGGAAAAGTGGATGATGCTGTTAAACTTTGGGAGGAGTGCAGAAAACATGGTCTTGCCGATGTCTATACATATGGGGTGATGATAGATGGGTACTGTAGAGCTGACAGAATTAAAGACGGTGAAGACCTATTTATTGAGTTGGTGACTAAGAAACTTCAGCTGAATTTCATTGTTTATAATACGCTTATAAGAGCATACTGTAGAAATGCGAACATGATTGGAGCCCTTGGTCTCTGCTGTGACATGAAAAAGAAGGGTATTGAACCAACTTGTACCACATATTCTTCTCTTATACATGGGATGTGCAATATTGGTAATGTCGAAGATGCAGAATACCTTCTTGATCAAATGAGGAAGGAGGGTTTGTTGCCTGATGTTGTTTGCTACACTGCACTAATTCATGGTTATTGTAAGCTAGGCCAGATGGATAAAGTAGGGAGTGTTCTTGGAGAGATGTCTTCATATAACGTACAACCTAATAAGATTACATACACTGTCATGATTGATGGGCATTGTAAACTAGGTAATATGGAAGAAGCAACTAAACTTCTATGCGAGATGGAAAAAAAGGGAATTGTCCCGGATGCTGTCACTTACAATGCCTTAACAAATGGATTTTGCAAGGAAAGGATGGTGGAAGAAGCTTTTGAAGTTTGTGATCAAATGTTCAGTAAAGGTCTAGCTTTAGATGAAATTACCTATACGACATTGGTTAGTGGGCTGCATCAAACAGCTACATGTGCAGACGAGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

822

Amino Acids

92.02

Weight (kDa)

8.06

Isoelectric Point (pI)

30.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_long	PF17177	181 - 320	9e-10	Pentacotripeptide-repeat region of PRORP
TPR_24	PF23276	228 - 337	8.5e-06	Fungal tetratrico peptide repeats
PPR_3	PF13812	232 - 284	1.6e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	236 - 269	9.1e-10	PPR repeat
PPR_2	PF13041	240 - 288	2.6e-14	PPR repeat family
PPR_3	PF13812	263 - 320	1.3e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	272 - 304	1e-11	PPR repeat
PPR_2	PF13041	275 - 324	2.2e-16	PPR repeat family
PPR	PF01535	278 - 308	2.1e-06	PPR repeat
PPR_3	PF13812	300 - 357	3.4e-07	Pentatricopeptide repeat domain
PPR_long	PF17177	328 - 414	9.2e-06	Pentacotripeptide-repeat region of PRORP
TPR_24	PF23276	331 - 438	2.3e-09	Fungal tetratrico peptide repeats
PPR_3	PF13812	333 - 391	3.2e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	341 - 373	2.3e-11	PPR repeat
PPR_2	PF13041	345 - 394	7.7e-18	PPR repeat family
PPR	PF01535	348 - 378	8.3e-09	PPR repeat
PPR_1	PF12854	376 - 407	3.7e-06	PPR repeat
PPR_2	PF13041	380 - 417	7e-06	PPR repeat family
PPR_3	PF13812	508 - 565	7.9e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	522 - 569	5.1e-16	PPR repeat family
PPR_1	PF12854	551 - 582	3.3e-11	PPR repeat
PPR	PF01535	558 - 588	1.6e-06	PPR repeat
PPR_2	PF13041	559 - 603	7.5e-13	PPR repeat family
PPR_1	PF12854	589 - 616	5.1e-06	PPR repeat
PPR_3	PF13812	613 - 669	1.7e-09	Pentatricopeptide repeat domain
PPR_long	PF17177	613 - 735	4.2e-09	Pentacotripeptide-repeat region of PRORP
TPR_24	PF23276	619 - 714	1e-08	Fungal tetratrico peptide repeats
PPR_2	PF13041	627 - 673	1.4e-14	PPR repeat family
PPR	PF01535	628 - 657	1.5e-06	PPR repeat
PPR_3	PF13812	651 - 706	5e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	655 - 688	2.1e-11	PPR repeat
PPR	PF01535	663 - 692	2.4e-06	PPR repeat
PPR_2	PF13041	666 - 707	2.9e-11	PPR repeat family
PPR_1	PF12854	691 - 714	6.5e-08	PPR repeat
PPR_2	PF13041	694 - 743	1.2e-17	PPR repeat family
PPR	PF01535	697 - 726	2.1e-06	PPR repeat
PPR_3	PF13812	717 - 774	1.4e-09	Pentatricopeptide repeat domain
PPR_long	PF17177	718 - 808	6.6e-10	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	726 - 758	7.6e-11	PPR repeat
PPR_2	PF13041	732 - 778	3.6e-17	PPR repeat family
PPR	PF01535	732 - 762	5.1e-10	PPR repeat
PPR_1	PF12854	760 - 792	1.5e-11	PPR repeat
PPR_2	PF13041	764 - 812	4.3e-14	PPR repeat family
PPR	PF01535	767 - 797	3.2e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003055)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19440 AT4G19440 AT4G19440 AT4G19440
fragaria_vesca	FvH4_4g10410 FvH4_4g10410 FvH4_4g10440 FvH4_5g24430 FvH4_5g24430 FvH4_5g24430 FvH4_5g24430
malus_domestica	MD06G1022200.v1.1
prunus_persica	Prupe.3G018200_v2.0.a1
pyrus_communis	pycom06g01610
rosa_chinensis	RchiOBHm_Chr4g0405931 RchiOBHm_Chr7g0214821 RchiOBHm_Chr7g0219861
rosa_laevigata	RLG00000002716 RLG00000008810
rosa_multiflora	Rmu_sc0002308.1_g000021 Rmu_sc0019702.1_g000004 Rmu_ssc0000087.1_g000071
rosa_roxburghii	Rroxscaffold_3G00244980 Rroxscaffold_5G00350670
rosa_rugosa	Rorug04G0064100 Rorug07G0147600 Rorug07G0147700 Rorug07G0147800
rosa_samantha	Rh4AG134900 Rh4BG130500 Rh4CG142300 Rh4DG129200 Rh7AG284500 Rh7BG275300 Rh7CG303700 Rh7DG287900
rosa_wichuraiana	Rw4G010980 Rw7G024260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1887, 1898
Acc36I	ACCTGC	1 cut(s)	1198
AccI	GTMKAC	1 cut(s)	1245
AccII	CGCG	1 cut(s)	73
AciI	CCGC	9 cut(s)	71, 86, 89, 92, 95, 98, 394, 434, 486
AclWI	GGATC	2 cut(s)	385, 1574
AcsI	RAATTY	6 cut(s)	206, 646, 1141, 1313, 1656, 1873
AcuI	CTGAAG	3 cut(s)	494, 1327, 1850
AfaI	GTAC	8 cut(s)	164, 348, 544, 912, 1087, 1802, 1984, 2181
AfiI	CCNNNNNNNGG	3 cut(s)	444, 898, 1039
AflIII	ACRYGT	1 cut(s)	2447
AhlI	ACTAGT	1 cut(s)	1088
Alw21I	GWGCWC	1 cut(s)	954
Alw26I	GTCTC	3 cut(s)	477, 708, 1946
AlwI	GGATC	2 cut(s)	385, 1574
AoxI	GGCC	2 cut(s)	1346, 2128
ApeKI	GCWGC	5 cut(s)	63, 500, 1222, 1451, 2431
ApoI	RAATTY	6 cut(s)	206, 646, 1141, 1313, 1656, 1873
Asp700I	GAANNNNTTC	3 cut(s)	16, 1402, 2046
AspS9I	GGNCC	1 cut(s)	1347
AsuC2I	CCSGG	2 cut(s)	128, 2291
AsuHPI	GGTGA	3 cut(s)	1798, 1841, 1864
BanII	GRGCYC	2 cut(s)	1386, 1936
BarI	GAAGNNNNNNTAC	2 cut(s)	123, 155
BauI	CACGAG	1 cut(s)	705
BbsI	GAAGAC	2 cut(s)	1839, 2160
Bbv12I	GWGCWC	1 cut(s)	954
BbvCI	CCTCAGC	1 cut(s)	78
BbvI	GCAGC	5 cut(s)	50, 487, 1209, 1463, 2418
BccI	CCATC	9 cut(s)	398, 901, 1388, 1636, 1790, 2128, 2210, 2263, 2335
BceAI	ACGGC	2 cut(s)	560, 1081
BcgI	CGANNNNNNTGC	2 cut(s)	482, 516
BciVI	GTATCC	1 cut(s)	142
BclI	TGATCA	2 cut(s)	2053, 2368
BcnI	CCSGG	2 cut(s)	128, 2291
BcoDI	GTCTC	3 cut(s)	477, 708, 1946
BcuI	ACTAGT	1 cut(s)	1088
BfaI	CTAG	6 cut(s)	1089, 1293, 1521, 2126, 2231, 2390
BfmI	CTRYAG	5 cut(s)	1166, 1242, 1387, 1804, 1909
BfuAI	ACCTGC	1 cut(s)	1198
BfuI	GTATCC	1 cut(s)	142
BglII	AGATCT	1 cut(s)	176
BisI	GCNGC	9 cut(s)	64, 89, 92, 95, 98, 501, 1223, 1452, 2432
BlpI	GCTNAGC	1 cut(s)	1203
BlsI	GCNGC	9 cut(s)	65, 90, 93, 96, 99, 502, 1224, 1453, 2433
BmcAI	AGTACT	1 cut(s)	1087
Bme1390I	CCNGG	2 cut(s)	128, 2291
BmgT120I	GGNCC	1 cut(s)	1347
BmiI	GGNNCC	1 cut(s)	1933
BmrFI	CCNGG	2 cut(s)	128, 2291
BmrI	ACTGGG	1 cut(s)	924
BmsI	GCATC	8 cut(s)	202, 769, 979, 1421, 1714, 2026, 2284, 2443
BmuI	ACTGGG	1 cut(s)	924
BpiI	GAAGAC	2 cut(s)	1839, 2160
BplI	GAGNNNNNCTC	2 cut(s)	581, 613
BpmI	CTGGAG	2 cut(s)	702, 995
Bpu10I	CCTNAGC	1 cut(s)	78
Bpu1102I	GCTNAGC	1 cut(s)	1203
BpuEI	CTTGAG	2 cut(s)	608, 1514
BpuMI	CCSGG	2 cut(s)	128, 2291
BsaBI	GATNNNNATC	1 cut(s)	993
BsaI	GGTCTC	1 cut(s)	1946
BsaJI	CCNNGG	2 cut(s)	462, 1936
BsaXI	ACNNNNNCTCC	4 cut(s)	1430, 1460, 2060, 2090
Bsc4I	CCNNNNNNNGG	3 cut(s)	444, 898, 1039
Bse1I	ACTGG	3 cut(s)	930, 1230, 1643
Bse3DI	GCAATG	2 cut(s)	415, 816
Bse8I	GATNNNNATC	1 cut(s)	993
BseDI	CCNNGG	2 cut(s)	462, 1936
BseGI	GGATG	6 cut(s)	1117, 1647, 1726, 2016, 2299, 2346
BseJI	GATNNNNATC	1 cut(s)	993
BseLI	CCNNNNNNNGG	3 cut(s)	444, 898, 1039
BseMI	GCAATG	2 cut(s)	415, 816
BseMII	CTCAG	6 cut(s)	92, 560, 1194, 1278, 1398, 1430
BseNI	ACTGG	3 cut(s)	930, 1230, 1643
BseRI	GAGGAG	3 cut(s)	235, 896, 1757
BseXI	GCAGC	5 cut(s)	50, 487, 1209, 1463, 2418
BseYI	CCCAGC	1 cut(s)	1349
BsgI	GTGCAG	3 cut(s)	1290, 1768, 2085
Bsh1236I	CGCG	1 cut(s)	73
BshFI	GGCC	2 cut(s)	1348, 2130
BsiHKAI	GWGCWC	1 cut(s)	954
BsiSI	CCGG	2 cut(s)	127, 2291
BslFI	GGGAC	6 cut(s)	53, 181, 604, 1016, 1649, 2273
BslI	CCNNNNNNNGG	3 cut(s)	444, 898, 1039
BsmAI	GTCTC	3 cut(s)	477, 708, 1946
BsmFI	GGGAC	6 cut(s)	53, 181, 604, 1016, 1649, 2273
BsmI	GAATGC	1 cut(s)	1402
BsnI	GGCC	2 cut(s)	1348, 2130
Bso31I	GGTCTC	1 cut(s)	1946
Bsp1286I	GDGCHC	3 cut(s)	954, 1386, 1936
Bsp143I	GATC	5 cut(s)	176, 390, 1566, 2053, 2368
Bsp1720I	GCTNAGC	1 cut(s)	1203
Bsp19I	CCATGG	1 cut(s)	462
BspACI	CCGC	9 cut(s)	71, 86, 89, 92, 95, 98, 394, 434, 486
BspANI	GGCC	2 cut(s)	1348, 2130
BspCNI	CTCAG	6 cut(s)	91, 559, 1195, 1277, 1399, 1429
BspFNI	CGCG	1 cut(s)	73
BspHI	TCATGA	2 cut(s)	202, 2208
BspLI	GGNNCC	1 cut(s)	1933
BspMAI	CTGCAG	1 cut(s)	1170
BspMI	ACCTGC	1 cut(s)	1198
BspPI	GGATC	2 cut(s)	385, 1574
BspTNI	GGTCTC	1 cut(s)	1946
BsrDI	GCAATG	2 cut(s)	415, 816
BsrI	ACTGG	3 cut(s)	930, 1230, 1643
BssECI	CCNNGG	2 cut(s)	462, 1936
BssMI	GATC	5 cut(s)	176, 390, 1566, 2053, 2368
BssSI	CACGAG	1 cut(s)	705
BssT1I	CCWWGG	2 cut(s)	462, 1936
Bst2BI	CACGAG	1 cut(s)	705
Bst4CI	ACNGT	7 cut(s)	542, 686, 1462, 1805, 1829, 1910, 2206
Bst6I	CTCTTC	2 cut(s)	144, 224
BstC8I	GCNNGC	3 cut(s)	375, 417, 1508
BstDEI	CTNAG	9 cut(s)	8, 78, 546, 1203, 1213, 1264, 1407, 1416, 1857
BstDSI	CCRYGG	1 cut(s)	462
BstF5I	GGATG	6 cut(s)	1117, 1647, 1726, 2016, 2299, 2346
BstFNI	CGCG	1 cut(s)	73
BstKTI	GATC	5 cut(s)	179, 393, 1569, 2056, 2371
BstMAI	GTCTC	3 cut(s)	477, 708, 1946
BstMBI	GATC	5 cut(s)	176, 390, 1566, 2053, 2368
BstMWI	GCNNNNNNNGC	9 cut(s)	60, 79, 88, 94, 97, 296, 749, 779, 2450
BstNSI	RCATGY	3 cut(s)	1202, 1510, 2451
BstSCI	CCNGG	2 cut(s)	126, 2289
BstSFI	CTRYAG	5 cut(s)	1166, 1242, 1387, 1804, 1909
BstUI	CGCG	1 cut(s)	73
BstV1I	GCAGC	5 cut(s)	50, 487, 1209, 1463, 2418
BstV2I	GAAGAC	2 cut(s)	1839, 2160
BstX2I	RGATCY	2 cut(s)	176, 1566
BstYI	RGATCY	2 cut(s)	176, 1566
BsuI	GTATCC	1 cut(s)	142
BsuRI	GGCC	2 cut(s)	1348, 2130
BtgI	CCRYGG	1 cut(s)	462
BtsCI	GGATG	6 cut(s)	1117, 1647, 1726, 2016, 2299, 2346
BtsI	GCAGTG	1 cut(s)	2097
BtsIMutI	CAGTG	6 cut(s)	438, 1237, 1307, 1467, 2097, 2202
BveI	ACCTGC	1 cut(s)	1198
Cac8I	GCNNGC	3 cut(s)	375, 417, 1508
CciI	TCATGA	2 cut(s)	202, 2208
Cfr13I	GGNCC	1 cut(s)	1347
CseI	GACGC	2 cut(s)	55, 62
Csp6I	GTAC	8 cut(s)	163, 347, 543, 911, 1086, 1801, 1983, 2180
CviQI	GTAC	8 cut(s)	163, 347, 543, 911, 1086, 1801, 1983, 2180
DdeI	CTNAG	9 cut(s)	8, 78, 546, 1203, 1213, 1264, 1407, 1416, 1857
DpnI	GATC	5 cut(s)	178, 392, 1568, 2055, 2370
DpnII	GATC	5 cut(s)	176, 390, 1566, 2053, 2368
Eam1104I	CTCTTC	2 cut(s)	144, 224
EarI	CTCTTC	2 cut(s)	144, 224
EciI	GGCGGA	1 cut(s)	75
Eco130I	CCWWGG	2 cut(s)	462, 1936
Eco24I	GRGCYC	2 cut(s)	1386, 1936
Eco31I	GGTCTC	1 cut(s)	1946
Eco32I	GATATC	1 cut(s)	459
Eco57I	CTGAAG	3 cut(s)	494, 1327, 1850
EcoRI	GAATTC	2 cut(s)	206, 646
EcoRV	GATATC	1 cut(s)	459
EcoT14I	CCWWGG	2 cut(s)	462, 1936
EcoT22I	ATGCAT	1 cut(s)	1695
EcoT38I	GRGCYC	2 cut(s)	1386, 1936
ErhI	CCWWGG	2 cut(s)	462, 1936
FalI	AAGNNNNNCTT	2 cut(s)	1535, 1567
FaqI	GGGAC	6 cut(s)	53, 181, 604, 1016, 1649, 2273
FauI	CCCGC	2 cut(s)	78, 441
FauNDI	CATATG	2 cut(s)	943, 1780
FbaI	TGATCA	2 cut(s)	2053, 2368
FblI	GTMKAC	1 cut(s)	1245
Fnu4HI	GCNGC	9 cut(s)	64, 89, 92, 95, 98, 501, 1223, 1452, 2432
FokI	GGATG	6 cut(s)	1124, 1654, 1733, 2023, 2306, 2353
FriOI	GRGCYC	2 cut(s)	1386, 1936
Fsp4HI	GCNGC	9 cut(s)	64, 89, 92, 95, 98, 501, 1223, 1452, 2432
FspBI	CTAG	6 cut(s)	1089, 1293, 1521, 2126, 2231, 2390
GluI	GCNGC	9 cut(s)	64, 89, 92, 95, 98, 501, 1223, 1452, 2432
GsaI	CCCAGC	1 cut(s)	1353
GsuI	CTGGAG	2 cut(s)	702, 995
HaeIII	GGCC	2 cut(s)	1348, 2130
HapII	CCGG	2 cut(s)	127, 2291
HgaI	GACGC	2 cut(s)	55, 62
HincII	GTYRAC	1 cut(s)	256
HindII	GTYRAC	1 cut(s)	256
HindIII	AAGCTT	4 cut(s)	297, 417, 750, 2352
HinfI	GANTC	4 cut(s)	529, 925, 1301, 1496
HpaII	CCGG	2 cut(s)	127, 2291
HphI	GGTGA	3 cut(s)	1798, 1841, 1864
Hpy166II	GTNNAC	7 cut(s)	256, 347, 727, 735, 1246, 1615, 2228
Hpy188I	TCNGA	3 cut(s)	105, 493, 1408
Hpy188III	TCNNGA	6 cut(s)	25, 203, 625, 719, 2051, 2209
Hpy8I	GTNNAC	7 cut(s)	256, 347, 727, 735, 1246, 1615, 2228
Hpy99I	CGWCG	1 cut(s)	233
HpyAV	CCTTC	7 cut(s)	6, 763, 1000, 1613, 1957, 2057, 2059
HpyCH4III	ACNGT	7 cut(s)	542, 686, 1462, 1805, 1829, 1910, 2206
HpyCH4IV	ACGT	2 cut(s)	787, 2178
HpyF10VI	GCNNNNNNNGC	9 cut(s)	60, 79, 88, 94, 97, 296, 749, 779, 2450
HpyF3I	CTNAG	9 cut(s)	8, 78, 546, 1203, 1213, 1264, 1407, 1416, 1857
HpySE526I	ACGT	2 cut(s)	787, 2178
Ksp22I	TGATCA	2 cut(s)	2053, 2368
Kzo9I	GATC	5 cut(s)	176, 390, 1566, 2053, 2368
LmnI	GCTCC	4 cut(s)	4, 826, 957, 1931
Lsp1109I	GCAGC	5 cut(s)	50, 487, 1209, 1463, 2418
LweI	GCATC	8 cut(s)	202, 769, 979, 1421, 1714, 2026, 2284, 2443
MaeI	CTAG	6 cut(s)	1089, 1293, 1521, 2126, 2231, 2390
MaeII	ACGT	2 cut(s)	787, 2178
MaeIII	GTNAC	8 cut(s)	832, 1132, 1147, 1184, 1462, 1852, 1949, 2299
MalI	GATC	5 cut(s)	178, 392, 1568, 2055, 2370
MboI	GATC	5 cut(s)	176, 390, 1566, 2053, 2368
MboII	GAAGA	9 cut(s)	131, 211, 885, 1844, 1986, 2045, 2160, 2255, 2360
MflI	RGATCY	2 cut(s)	176, 1566
MhlI	GDGCHC	3 cut(s)	954, 1386, 1936
MmeI	TCCRAC	1 cut(s)	498
Mph1103I	ATGCAT	1 cut(s)	1695
MroXI	GAANNNNTTC	3 cut(s)	16, 1402, 2046
MslI	CAYNNNNRTG	2 cut(s)	467, 2207
MspA1I	CMGCKG	1 cut(s)	1870
MspI	CCGG	2 cut(s)	127, 2291
MspR9I	CCNGG	2 cut(s)	128, 2291
Mva1269I	GAATGC	1 cut(s)	1402
MvnI	CGCG	1 cut(s)	73
MwoI	GCNNNNNNNGC	9 cut(s)	60, 79, 88, 94, 97, 296, 749, 779, 2450
NciI	CCSGG	2 cut(s)	128, 2291
NcoI	CCATGG	1 cut(s)	462
NdeI	CATATG	2 cut(s)	943, 1780
NdeII	GATC	5 cut(s)	176, 390, 1566, 2053, 2368
NlaIV	GGNNCC	1 cut(s)	1933
NmuCI	GTSAC	4 cut(s)	1462, 1852, 1949, 2299
NsiI	ATGCAT	1 cut(s)	1695
NspI	RCATGY	3 cut(s)	1202, 1510, 2451
PaeI	GCATGC	1 cut(s)	1510
PagI	TCATGA	2 cut(s)	202, 2208
PciI	ACATGT	1 cut(s)	2447
PctI	GAATGC	1 cut(s)	1402
PdmI	GAANNNNTTC	3 cut(s)	16, 1402, 2046
PfeI	GAWTC	4 cut(s)	529, 925, 1301, 1496
PflFI	GACNNNGTC	1 cut(s)	1250
PfoI	TCCNGGA	1 cut(s)	2289
PkrI	GCNGC	9 cut(s)	65, 90, 93, 96, 99, 502, 1224, 1453, 2433
PscI	ACATGT	1 cut(s)	2447
PsiI	TTATAA	2 cut(s)	1887, 1898
PspFI	CCCAGC	1 cut(s)	1349
PspN4I	GGNNCC	1 cut(s)	1933
PspPI	GGNCC	1 cut(s)	1347
PsrI	GAACNNNNNNTAC	2 cut(s)	2136, 2168
PstI	CTGCAG	1 cut(s)	1170
PsuI	RGATCY	2 cut(s)	176, 1566
PsyI	GACNNNGTC	1 cut(s)	1250
PvuII	CAGCTG	1 cut(s)	1870
RsaI	GTAC	8 cut(s)	164, 348, 544, 912, 1087, 1802, 1984, 2181
RsaNI	GTAC	8 cut(s)	163, 347, 543, 911, 1086, 1801, 1983, 2180
RseI	CAYNNNNRTG	2 cut(s)	467, 2207
SatI	GCNGC	9 cut(s)	64, 89, 92, 95, 98, 501, 1223, 1452, 2432
Sau3AI	GATC	5 cut(s)	176, 390, 1566, 2053, 2368
Sau96I	GGNCC	1 cut(s)	1347
ScaI	AGTACT	1 cut(s)	1087
ScrFI	CCNGG	2 cut(s)	128, 2291
SduI	GDGCHC	3 cut(s)	954, 1386, 1936
SfaNI	GCATC	8 cut(s)	202, 769, 979, 1421, 1714, 2026, 2284, 2443
SfcI	CTRYAG	5 cut(s)	1166, 1242, 1387, 1804, 1909
SmiMI	CAYNNNNRTG	2 cut(s)	467, 2207
SmlI	CTYRAG	2 cut(s)	623, 1529
SmoI	CTYRAG	2 cut(s)	623, 1529
SpeI	ACTAGT	1 cut(s)	1088
SphI	GCATGC	1 cut(s)	1510
SsiI	CCGC	9 cut(s)	71, 86, 89, 92, 95, 98, 394, 434, 486
SspI	AATATT	1 cut(s)	2020
SspMI	CTAG	6 cut(s)	1089, 1293, 1521, 2126, 2231, 2390
StyD4I	CCNGG	2 cut(s)	126, 2289
StyI	CCWWGG	2 cut(s)	462, 1936
TaaI	ACNGT	7 cut(s)	542, 686, 1462, 1805, 1829, 1910, 2206
TaiI	ACGT	2 cut(s)	790, 2181
TaqI	TCGA	5 cut(s)	26, 210, 588, 672, 2031
TatI	WGTACW	3 cut(s)	346, 542, 1085
TauI	GCSGC	4 cut(s)	91, 94, 97, 100
TfiI	GAWTC	4 cut(s)	529, 925, 1301, 1496
TscAI	CASTG	6 cut(s)	445, 1237, 1314, 1467, 2104, 2209
TseFI	GTSAC	4 cut(s)	1462, 1852, 1949, 2299
TseI	GCWGC	5 cut(s)	63, 500, 1222, 1451, 2431
Tsp45I	GTSAC	4 cut(s)	1462, 1852, 1949, 2299
TspGWI	ACGGA	3 cut(s)	217, 263, 606
TspRI	CASTG	6 cut(s)	445, 1237, 1314, 1467, 2104, 2209
Tth111I	GACNNNGTC	1 cut(s)	1250
XapI	RAATTY	6 cut(s)	206, 646, 1141, 1313, 1656, 1873
XceI	RCATGY	3 cut(s)	1202, 1510, 2451
XmiI	GTMKAC	1 cut(s)	1245
XmnI	GAANNNNTTC	3 cut(s)	16, 1402, 2046
XspI	CTAG	6 cut(s)	1089, 1293, 1521, 2126, 2231, 2390
ZrmI	AGTACT	1 cut(s)	1087
Zsp2I	ATGCAT	1 cut(s)	1695

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.