Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0003055

Physical Location & Seq

Genomic Coordinates Reverse (-)

11690766 .. 11691233

Gene Structure 468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0147800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGTGGGATGAAGCTGCAGTACATGTGTGTTTCGATCCGCATGTGGCAGCTCAGGTTCTGTCCGTTCCACTTAGTAGGCGTTTTGGGCAGGATAGAGTGGCTTGGAAGCTAAACAAAGGCGGTTTCTTTTCGGTGAAATCGGCCTACACCATAGCTCGGGATTTCTCTATTGGCCATATATTTGCTTCATCTTCCACTGGGGATCCGTATGGCCCAATCTGGAGGGCCTTGTGGAAGGCCAAAGTCCCCAGTAAGGTGGCCATCTTTGGGTGGAGAGCAGTACTTAACCTTCTCCCTACTCGTGCGGCTCTATCGCATAAGGGATATACTGGAGATCTTCGCTGTGTTATTTGTTCTGAGGCAGTGGAAACGATGGAACATTTGTTCAGTCAGTGTGATTTATCTAAGGAGATCATCGGTGCTTCTCCTTTTTTCATTCCATCTTCTCATCTACCATGGAAAGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

155

Amino Acids

17.22

Weight (kDa)

8.98

Isoelectric Point (pI)

37.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RVT	PF13966	43 - 137	1.3e-18	zinc-binding in reverse transcriptase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003055)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19440 AT4G19440 AT4G19440 AT4G19440
fragaria_vesca	FvH4_4g10410 FvH4_4g10410 FvH4_4g10440 FvH4_5g24430 FvH4_5g24430 FvH4_5g24430 FvH4_5g24430
malus_domestica	MD06G1022200.v1.1
prunus_persica	Prupe.3G018200_v2.0.a1
pyrus_communis	pycom06g01610
rosa_chinensis	RchiOBHm_Chr4g0405931 RchiOBHm_Chr7g0214821 RchiOBHm_Chr7g0219861
rosa_laevigata	RLG00000002716 RLG00000008810
rosa_multiflora	Rmu_sc0002308.1_g000021 Rmu_sc0019702.1_g000004 Rmu_ssc0000087.1_g000071
rosa_roxburghii	Rroxscaffold_3G00244980 Rroxscaffold_5G00350670
rosa_rugosa	Rorug04G0064100 Rorug07G0147600 Rorug07G0147700 Rorug07G0147800
rosa_samantha	Rh4AG134900 Rh4BG130500 Rh4CG142300 Rh4DG129200 Rh7AG284500 Rh7BG275300 Rh7CG303700 Rh7DG287900
rosa_wichuraiana	Rw4G010980 Rw7G024260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	38, 120, 305
AclWI	GGATC	3 cut(s)	29, 197, 210
AcoI	YGGCCR	2 cut(s)	172, 258
AfaI	GTAC	2 cut(s)	21, 282
AfiI	CCNNNNNNNGG	3 cut(s)	156, 253, 267
AflIII	ACRYGT	1 cut(s)	22
AloI	GAACNNNNNNTCC	2 cut(s)	368, 400
AluBI	AGCT	4 cut(s)	14, 50, 109, 155
AluI	AGCT	4 cut(s)	14, 50, 109, 155
AlwI	GGATC	3 cut(s)	29, 197, 210
AlwNI	CAGNNNCTG	1 cut(s)	58
Ama87I	CYCGRG	1 cut(s)	156
AoxI	GGCC	6 cut(s)	141, 172, 211, 225, 237, 258
ApeKI	GCWGC	2 cut(s)	14, 47
AspS9I	GGNCC	2 cut(s)	212, 225
AsuHPI	GGTGA	1 cut(s)	145
AvaI	CYCGRG	1 cut(s)	156
BalI	TGGCCA	2 cut(s)	174, 260
BamHI	GGATCC	1 cut(s)	202
BarI	GAAGNNNNNNTAC	3 cut(s)	35, 273, 305
BauI	CACGAG	1 cut(s)	300
BbvI	GCAGC	1 cut(s)	59
BccI	CCATC	3 cut(s)	269, 367, 448
BfaI	CTAG	1 cut(s)	466
BfmI	CTRYAG	1 cut(s)	15
BglII	AGATCT	1 cut(s)	334
BisI	GCNGC	3 cut(s)	15, 48, 306
BlsI	GCNGC	3 cut(s)	16, 49, 307
BmcAI	AGTACT	1 cut(s)	282
BmeT110I	CYCGRG	1 cut(s)	156
BmgT120I	GGNCC	2 cut(s)	212, 225
BmiI	GGNNCC	1 cut(s)	204
BmrI	ACTGGG	2 cut(s)	207, 243
BmuI	ACTGGG	2 cut(s)	207, 243
BpmI	CTGGAG	2 cut(s)	241, 351
Bpu10I	CCTNAGC	1 cut(s)	51
BsaJI	CCNNGG	1 cut(s)	455
Bsc4I	CCNNNNNNNGG	3 cut(s)	156, 253, 267
Bse1I	ACTGG	3 cut(s)	202, 249, 334
BseDI	CCNNGG	1 cut(s)	455
BseGI	GGATG	1 cut(s)	13
BseLI	CCNNNNNNNGG	3 cut(s)	156, 253, 267
BseMII	CTCAG	2 cut(s)	65, 348
BseNI	ACTGG	3 cut(s)	202, 249, 334
BseXI	GCAGC	1 cut(s)	59
BshFI	GGCC	6 cut(s)	143, 174, 213, 227, 239, 260
BsiHKCI	CYCGRG	1 cut(s)	156
BslFI	GGGAC	1 cut(s)	230
BslI	CCNNNNNNNGG	3 cut(s)	156, 253, 267
BsmFI	GGGAC	1 cut(s)	230
BsnI	GGCC	6 cut(s)	143, 174, 213, 227, 239, 260
BsoBI	CYCGRG	1 cut(s)	156
Bsp143I	GATC	4 cut(s)	34, 202, 334, 411
Bsp19I	CCATGG	1 cut(s)	455
BspACI	CCGC	3 cut(s)	38, 120, 305
BspANI	GGCC	6 cut(s)	143, 174, 213, 227, 239, 260
BspCNI	CTCAG	2 cut(s)	64, 349
BspLI	GGNNCC	1 cut(s)	204
BspMAI	CTGCAG	1 cut(s)	19
BspPI	GGATC	3 cut(s)	29, 197, 210
BsrI	ACTGG	3 cut(s)	202, 249, 334
BssECI	CCNNGG	1 cut(s)	455
BssMI	GATC	4 cut(s)	34, 202, 334, 411
BssSI	CACGAG	1 cut(s)	300
BssT1I	CCWWGG	1 cut(s)	455
Bst2BI	CACGAG	1 cut(s)	300
BstDEI	CTNAG	4 cut(s)	51, 71, 357, 405
BstDSI	CCRYGG	1 cut(s)	455
BstF5I	GGATG	1 cut(s)	13
BstKTI	GATC	4 cut(s)	37, 205, 337, 414
BstMBI	GATC	4 cut(s)	34, 202, 334, 411
BstMWI	GCNNNNNNNGC	1 cut(s)	85
BstNSI	RCATGY	2 cut(s)	26, 44
BstSFI	CTRYAG	1 cut(s)	15
BstV1I	GCAGC	1 cut(s)	59
BstX2I	RGATCY	2 cut(s)	202, 334
BstXI	CCANNNNNNTGG	1 cut(s)	256
BstYI	RGATCY	2 cut(s)	202, 334
BsuRI	GGCC	6 cut(s)	143, 174, 213, 227, 239, 260
BtgI	CCRYGG	1 cut(s)	455
BtsCI	GGATG	1 cut(s)	13
BtsI	GCAGTG	1 cut(s)	369
BtsIMutI	CAGTG	3 cut(s)	195, 369, 398
CaiI	CAGNNNCTG	1 cut(s)	58
Cfr13I	GGNCC	2 cut(s)	212, 225
Csp6I	GTAC	2 cut(s)	20, 281
CviAII	CATG	3 cut(s)	23, 41, 456
CviQI	GTAC	2 cut(s)	20, 281
DdeI	CTNAG	4 cut(s)	51, 71, 357, 405
DpnI	GATC	4 cut(s)	36, 204, 336, 413
DpnII	GATC	4 cut(s)	34, 202, 334, 411
EaeI	YGGCCR	2 cut(s)	172, 258
Eco130I	CCWWGG	1 cut(s)	455
Eco88I	CYCGRG	1 cut(s)	156
EcoO109I	RGGNCCY	1 cut(s)	225
EcoT14I	CCWWGG	1 cut(s)	455
ErhI	CCWWGG	1 cut(s)	455
FaeI	CATG	3 cut(s)	26, 44, 459
FaiI	YATR	9 cut(s)	24, 42, 152, 177, 179, 210, 318, 327, 457
FaqI	GGGAC	1 cut(s)	230
FatI	CATG	3 cut(s)	22, 40, 455
Fnu4HI	GCNGC	3 cut(s)	15, 48, 306
FokI	GGATG	1 cut(s)	20
Fsp4HI	GCNGC	3 cut(s)	15, 48, 306
FspBI	CTAG	1 cut(s)	466
GluI	GCNGC	3 cut(s)	15, 48, 306
GsuI	CTGGAG	2 cut(s)	241, 351
HaeIII	GGCC	6 cut(s)	143, 174, 213, 227, 239, 260
Hin1II	CATG	3 cut(s)	26, 44, 459
HphI	GGTGA	1 cut(s)	145
Hpy188I	TCNGA	1 cut(s)	358
Hpy188III	TCNNGA	2 cut(s)	158, 220
HpyAV	CCTTC	2 cut(s)	229, 299
HpyCH4V	TGCA	1 cut(s)	17
HpyF10VI	GCNNNNNNNGC	1 cut(s)	85
HpyF3I	CTNAG	4 cut(s)	51, 71, 357, 405
Hsp92II	CATG	3 cut(s)	26, 44, 459
Kzo9I	GATC	4 cut(s)	34, 202, 334, 411
LpnPI	CCDG	6 cut(s)	38, 74, 183, 205, 262, 315
Lsp1109I	GCAGC	1 cut(s)	59
MaeI	CTAG	1 cut(s)	466
MalI	GATC	4 cut(s)	36, 204, 336, 413
MboI	GATC	4 cut(s)	34, 202, 334, 411
MboII	GAAGA	3 cut(s)	183, 329, 435
MflI	RGATCY	2 cut(s)	202, 334
MlsI	TGGCCA	2 cut(s)	174, 260
MluNI	TGGCCA	2 cut(s)	174, 260
MnlI	CCTC	2 cut(s)	216, 352
Mox20I	TGGCCA	2 cut(s)	174, 260
MscI	TGGCCA	2 cut(s)	174, 260
MseI	TTAA	1 cut(s)	285
Msp20I	TGGCCA	2 cut(s)	174, 260
MwoI	GCNNNNNNNGC	1 cut(s)	85
NcoI	CCATGG	1 cut(s)	455
NdeII	GATC	4 cut(s)	34, 202, 334, 411
NlaIII	CATG	3 cut(s)	26, 44, 459
NlaIV	GGNNCC	1 cut(s)	204
NspI	RCATGY	2 cut(s)	26, 44
PciI	ACATGT	1 cut(s)	22
PkrI	GCNGC	3 cut(s)	16, 49, 307
PscI	ACATGT	1 cut(s)	22
PspN4I	GGNNCC	1 cut(s)	204
PspPI	GGNCC	2 cut(s)	212, 225
PstI	CTGCAG	1 cut(s)	19
PstNI	CAGNNNCTG	1 cut(s)	58
PsuI	RGATCY	2 cut(s)	202, 334
RsaI	GTAC	2 cut(s)	21, 282
RsaNI	GTAC	2 cut(s)	20, 281
SaqAI	TTAA	1 cut(s)	285
SatI	GCNGC	3 cut(s)	15, 48, 306
Sau3AI	GATC	4 cut(s)	34, 202, 334, 411
Sau96I	GGNCC	2 cut(s)	212, 225
ScaI	AGTACT	1 cut(s)	282
SetI	ASST	7 cut(s)	16, 52, 57, 111, 157, 258, 291
SfcI	CTRYAG	1 cut(s)	15
SsiI	CCGC	3 cut(s)	38, 120, 305
SspMI	CTAG	1 cut(s)	466
StyI	CCWWGG	1 cut(s)	455
TaqI	TCGA	1 cut(s)	33
TatI	WGTACW	2 cut(s)	19, 280
TauI	GCSGC	1 cut(s)	308
Tru1I	TTAA	1 cut(s)	285
Tru9I	TTAA	1 cut(s)	285
TscAI	CASTG	3 cut(s)	202, 369, 398
TseI	GCWGC	2 cut(s)	14, 47
TspDTI	ATGAA	3 cut(s)	24, 177, 424
TspGWI	ACGGA	2 cut(s)	52, 195
TspRI	CASTG	3 cut(s)	202, 369, 398
XceI	RCATGY	2 cut(s)	26, 44
XspI	CTAG	1 cut(s)	466
ZrmI	AGTACT	1 cut(s)	282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.