Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0003055

Physical Location & Seq

Genomic Coordinates Reverse (-)

29799543 .. 29802121

Gene Structure 2579 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G024260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2115 bp

ATGCAATTCTCAATGGATTTGAGAAGGCTTCCGATCTCCAAACCCGCTTCTCTCTTCTACCCAATCACACGCCCCTTAACGGGCGTGACATTCACCTTCCAACGCCGCCACGACCCTCCTCAGCCGCCGCCGTTACAGCCTCCGAGTCCACCACAGCCTCCCAATCCGGGTTTGCTCAACTGGGTATCTTCTATTCTCTCAAACCCATCTTTGGATTCTTCTAAATGTGAATCTCTCATGCCCCTTTTGTCCCCTCATGAATTTGATCAGTTATTCTACTCCATTAGGTCCAATGTGAACCCCAAAACAGCTCTTCATTTCTTTCATTTTGCTTCTCAATCTTTTAAGTTTCGGTTTACTGTTCGATCTTTCTGTGTTTTGGTTCATTTGCTCATTGCTTCAAATCTTGGGCCTCCTGCGAGGTTGCTTTTGATTCGTTTGATTGATGGGAATGTCCCAGTTTTGTGTGCTGACCCCAACAGCAAGCATATTGAGATAGCCGTCGCAATGTCGGAGTTGAACAATGCGTCCCAACCGGCTCTGGGGATTCAGGCATTGGATATGTTAATTCATGTTTACTGTACCCAGTTCAAGAATTTGGGTTTTGGTTATGCTGTTCATGTGTTTGAGCATTTTTCGGATAAGGGTGTGTTTCCGTCTTTGAAGACTTGTAATGTTTTGCTGAAGCTGTCATTATTTGAAGTTATGACTCGAGGTGTTTGCCCTGATGTCTTCTTGTTTACTACTGCAATTAATGCGTTTTGCAAGGGAGGGAAGGTGGATGATGCAATAGCTGTGCTCTCAAAAATGGAGAGCATTGGTGTTGCTCCAAATGTGGTTACTTACAATAGCGTTATCCACGGCTATGTAAGAGCACTCGAGATAAGGGATGATATGGTATCGAATGGGGTTACTCCTAATTCTGTTACTCTGAATTCGCTACTGCATGGATTTTGTAAAAGTAATCAATTTGAGCATCCTGAGCAATTTTTGGACAAGATGCTAGCCAGTGGTTTACCAGTCAACCAAGTTGTTTCTTACTCAATTCACTACGAAATGTTATTAAGAAACTTTAGGCCCAGTGATAGTTTGCTTACTACATTGTTTGTTGGGCTATGCAAAGATGGGAAGAATTTAGAGGCGATCGAACTTTGGTTTAGGCTATCGGAGAAGGGGTTTGCAGCCAACACAGCGACCACAAATGCTCTAATCCATGGACTTTGTGAATCTGGTAGCATCGAAGAGGTTTTCTCATACAACACACTCATCTTAAGTTGTTGCAAGGAGGGAAGAGTGGCAGAAGGTTTTAAGCTTAGAGAAGAGATGTCTAAGCAAGGAATTGATCCTGACATCAACACTTACAATATGCTATTGCATAGTCTATGTAGTATGGGCAAAGTGGATGATGCTGTTAAACTTTGGGTTGAATGCGAAAATCATGGTCTTGTGGCCAACGTTTATACATATGAGGTGATGATAGAAGGGTACTGTAACTCTGGTAGAATCAAGATGCTGAACTCCTGTTTAGTAAGTTGGGCAGTCCAACCAACTTATGCCACATATTTTTCTCTTATAAATAGGCTATGCAATATTGGCCATGTCGAGGATGCAAAAGAGCTCATTGATGAAATGAGGAGGAATGGTTTGGTGCCAAATGTCGCTTGTTATGCTGAAGTGATTTGTGGTTATTGTAAGCTAGGCCAAATGGATAAAGCGAGGAGCATTTTTCTGGAGATGTCCTCATATAACATACAACCGAATGAATTTACATATACTGTCCTGATTGATGGGTATTGTAAGCTAGGCAACATGGAAGAAAAAATATACTTCAATGTGAGATGGCAAAAAAGGGAATTGACCCAGATGCAGTCACTTAGACCTAGTTTTGCAAGCACAGGAAAGTGGAATATGCTTTTGAATAATGTGATCTTGTCTGGTAAAGATGTACCTCTAGATGGAATCACTTATGCAACATGTATTGACGGCTTGTATCAGCCCAATAGATGTGAATATCAGGAATCATATGGAAGCATGGAAAAGGTAATGTATTCAAAATTTTGCATGCAAAATCCTTGCATGTTTAGACATGCTAACATGAAATTTTTTTGCCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

704

Amino Acids

79.26

Weight (kDa)

6.8

Isoelectric Point (pI)

43.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	234 - 289	5.2e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	238 - 271	2.9e-11	PPR repeat
PPR_2	PF13041	242 - 290	1.9e-13	PPR repeat family
PPR_2	PF13041	291 - 320	3.4e-06	PPR repeat family
PPR_1	PF12854	302 - 334	1.2e-06	PPR repeat
PPR_2	PF13041	306 - 349	3.7e-06	PPR repeat family
PPR_2	PF13041	366 - 408	2.7e-06	PPR repeat family
PPR_2	PF13041	416 - 462	1.3e-15	PPR repeat family
PPR_1	PF12854	416 - 443	2.7e-07	PPR repeat
PPR	PF01535	417 - 447	3.7e-06	PPR repeat
PPR_3	PF13812	438 - 496	2.3e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	446 - 475	1.6e-09	PPR repeat
PPR_2	PF13041	449 - 498	2.1e-13	PPR repeat family
PPR_long	PF17177	512 - 612	1.2e-08	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	515 - 545	6.2e-06	PPR repeat
PPR_2	PF13041	517 - 556	8.9e-08	PPR repeat family
PPR_2	PF13041	551 - 600	1.2e-16	PPR repeat family
PPR_1	PF12854	583 - 606	5e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003055)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19440 AT4G19440 AT4G19440 AT4G19440
fragaria_vesca	FvH4_4g10410 FvH4_4g10410 FvH4_4g10440 FvH4_5g24430 FvH4_5g24430 FvH4_5g24430 FvH4_5g24430
malus_domestica	MD06G1022200.v1.1
prunus_persica	Prupe.3G018200_v2.0.a1
pyrus_communis	pycom06g01610
rosa_chinensis	RchiOBHm_Chr4g0405931 RchiOBHm_Chr7g0214821 RchiOBHm_Chr7g0219861
rosa_laevigata	RLG00000002716 RLG00000008810
rosa_multiflora	Rmu_sc0002308.1_g000021 Rmu_sc0019702.1_g000004 Rmu_ssc0000087.1_g000071
rosa_roxburghii	Rroxscaffold_3G00244980 Rroxscaffold_5G00350670
rosa_rugosa	Rorug04G0064100 Rorug07G0147600 Rorug07G0147700 Rorug07G0147800
rosa_samantha	Rh4AG134900 Rh4BG130500 Rh4CG142300 Rh4DG129200 Rh7AG284500 Rh7BG275300 Rh7CG303700 Rh7DG287900
rosa_wichuraiana	Rw4G010980 Rw7G024260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1574
AccB1I	GGYRCC	1 cut(s)	1648
AciI	CCGC	4 cut(s)	45, 106, 125, 128
AclI	AACGTT	1 cut(s)	1455
AclWI	GGATC	1 cut(s)	1337
AcoI	YGGCCR	2 cut(s)	1449, 1594
AcsI	RAATTY	7 cut(s)	260, 595, 934, 1132, 1763, 2054, 2099
AcuI	CTGAAG	2 cut(s)	704, 1692
AfaI	GTAC	3 cut(s)	583, 1487, 1947
AfiI	CCNNNNNNNGG	7 cut(s)	79, 80, 167, 211, 542, 1603, 1955
AflII	CTTAAG	1 cut(s)	1270
AflIII	ACRYGT	1 cut(s)	1973
AgsI	TTSAA	9 cut(s)	402, 520, 592, 664, 701, 1427, 1831, 1918, 2052
AloI	GAACNNNNNNTCC	2 cut(s)	512, 544
AluBI	AGCT	7 cut(s)	311, 688, 794, 1312, 1618, 1696, 1801
AluI	AGCT	7 cut(s)	311, 688, 794, 1312, 1618, 1696, 1801
Alw21I	GWGCWC	3 cut(s)	801, 877, 1620
AlwI	GGATC	1 cut(s)	1337
Ama87I	CYCGRG	2 cut(s)	711, 878
AoxI	GGCC	5 cut(s)	410, 1076, 1449, 1594, 1699
ApeKI	GCWGC	1 cut(s)	1181
ApoI	RAATTY	7 cut(s)	260, 595, 934, 1132, 1763, 2054, 2099
AseI	ATTAAT	1 cut(s)	753
AspS9I	GGNCC	3 cut(s)	288, 410, 1077
AsuC2I	CCSGG	1 cut(s)	168
AsuHPI	GGTGA	2 cut(s)	85, 1483
AsuNHI	GCTAGC	1 cut(s)	1003
AvaI	CYCGRG	2 cut(s)	711, 878
AvaII	GGWCC	1 cut(s)	288
BalI	TGGCCA	2 cut(s)	1451, 1596
BanI	GGYRCC	1 cut(s)	1648
BanII	GRGCYC	1 cut(s)	1620
BbsI	GAAGAC	2 cut(s)	671, 724
Bbv12I	GWGCWC	3 cut(s)	801, 877, 1620
BbvCI	CCTCAGC	1 cut(s)	120
BbvI	GCAGC	1 cut(s)	1193
BccI	CCATC	6 cut(s)	214, 440, 1118, 1781, 1833, 1949
BceAI	ACGGC	4 cut(s)	115, 485, 877, 1999
BcgI	CGANNNNNNTGC	2 cut(s)	702, 736
BclI	TGATCA	1 cut(s)	265
BcnI	CCSGG	1 cut(s)	168
BfaI	CTAG	5 cut(s)	1004, 1697, 1802, 1881, 1952
BfrI	CTTAAG	1 cut(s)	1270
BisI	GCNGC	4 cut(s)	106, 125, 128, 1182
BlsI	GCNGC	4 cut(s)	107, 126, 129, 1183
Bme1390I	CCNGG	1 cut(s)	168
Bme18I	GGWCC	1 cut(s)	288
BmeT110I	CYCGRG	2 cut(s)	711, 878
BmgT120I	GGNCC	3 cut(s)	288, 410, 1077
BmiI	GGNNCC	1 cut(s)	1650
BmrFI	CCNGG	1 cut(s)	168
BmrI	ACTGGG	4 cut(s)	190, 452, 580, 1074
BmsI	GCATC	8 cut(s)	775, 985, 990, 1245, 1396, 1500, 1597, 1854
BmtI	GCTAGC	1 cut(s)	1007
BmuI	ACTGGG	4 cut(s)	190, 452, 580, 1074
BpiI	GAAGAC	2 cut(s)	671, 724
BplI	GAGNNNNNCTC	4 cut(s)	1235, 1267, 1724, 1756
BpmI	CTGGAG	1 cut(s)	1751
Bpu10I	CCTNAGC	2 cut(s)	120, 981
BpuMI	CCSGG	1 cut(s)	168
BsaJI	CCNNGG	2 cut(s)	859, 1213
BsaXI	ACNNNNNCTCC	6 cut(s)	762, 792, 1160, 1190, 1627, 1657
Bsc4I	CCNNNNNNNGG	7 cut(s)	79, 80, 167, 211, 542, 1603, 1955
Bse118I	RCCGGY	1 cut(s)	535
Bse1I	ACTGG	6 cut(s)	185, 458, 586, 1008, 1019, 1080
Bse3DI	GCAATG	2 cut(s)	393, 513
BseDI	CCNNGG	2 cut(s)	859, 1213
BseGI	GGATG	5 cut(s)	787, 895, 976, 1408, 1612
BseLI	CCNNNNNNNGG	7 cut(s)	79, 80, 167, 211, 542, 1603, 1955
BseMI	GCAATG	2 cut(s)	393, 513
BseMII	CTCAG	2 cut(s)	134, 972
BseNI	ACTGG	6 cut(s)	185, 458, 586, 1008, 1019, 1080
BseRI	GAGGAG	3 cut(s)	108, 1648, 1732
BseXI	GCAGC	1 cut(s)	1193
Bsh1285I	CGRYCG	1 cut(s)	1146
BshFI	GGCC	5 cut(s)	412, 1078, 1451, 1596, 1701
BshNI	GGYRCC	1 cut(s)	1648
BsiEI	CGRYCG	1 cut(s)	1146
BsiHKAI	GWGCWC	3 cut(s)	801, 877, 1620
BsiHKCI	CYCGRG	2 cut(s)	711, 878
BsiSI	CCGG	2 cut(s)	167, 536
BslFI	GGGAC	3 cut(s)	235, 440, 514
BslI	CCNNNNNNNGG	7 cut(s)	79, 80, 167, 211, 542, 1603, 1955
BsmFI	GGGAC	3 cut(s)	235, 440, 514
BsmI	GAATGC	1 cut(s)	1433
BsnI	GGCC	5 cut(s)	412, 1078, 1451, 1596, 1701
BsoBI	CYCGRG	2 cut(s)	711, 878
Bsp1286I	GDGCHC	3 cut(s)	801, 877, 1620
Bsp143I	GATC	6 cut(s)	33, 265, 365, 1143, 1342, 1926
Bsp19I	CCATGG	1 cut(s)	1213
BspACI	CCGC	4 cut(s)	45, 106, 125, 128
BspANI	GGCC	5 cut(s)	412, 1078, 1451, 1596, 1701
BspCNI	CTCAG	2 cut(s)	133, 973
BspHI	TCATGA	1 cut(s)	256
BspLI	GGNNCC	1 cut(s)	1650
BspOI	GCTAGC	1 cut(s)	1007
BspPI	GGATC	1 cut(s)	1337
BspQI	GCTCTTC	1 cut(s)	318
BspT107I	GGYRCC	1 cut(s)	1648
BspTI	CTTAAG	1 cut(s)	1270
BsrDI	GCAATG	2 cut(s)	393, 513
BsrFI	RCCGGY	1 cut(s)	535
BsrI	ACTGG	6 cut(s)	185, 458, 586, 1008, 1019, 1080
BssAI	RCCGGY	1 cut(s)	535
BssECI	CCNNGG	2 cut(s)	859, 1213
BssMI	GATC	6 cut(s)	33, 265, 365, 1143, 1342, 1926
BssT1I	CCWWGG	1 cut(s)	1213
Bst4CI	ACNGT	4 cut(s)	361, 581, 1490, 1777
Bst6I	CTCTTC	5 cut(s)	59, 318, 1236, 1285, 1314
BstAFI	CTTAAG	1 cut(s)	1270
BstAPI	GCANNNNNTGC	1 cut(s)	755
BstC8I	GCNNGC	4 cut(s)	485, 1005, 1891, 2063
BstDEI	CTNAG	5 cut(s)	120, 981, 1313, 1329, 1874
BstDSI	CCRYGG	2 cut(s)	859, 1213
BstF5I	GGATG	5 cut(s)	787, 895, 976, 1408, 1612
BstKTI	GATC	6 cut(s)	36, 268, 368, 1146, 1345, 1929
BstMBI	GATC	6 cut(s)	33, 265, 365, 1143, 1342, 1926
BstMCI	CGRYCG	1 cut(s)	1146
BstMWI	GCNNNNNNNGC	6 cut(s)	136, 755, 982, 1190, 1593, 1667
BstNSI	RCATGY	4 cut(s)	1977, 2065, 2080, 2090
BstSCI	CCNGG	1 cut(s)	166
BstV1I	GCAGC	1 cut(s)	1193
BstV2I	GAAGAC	2 cut(s)	671, 724
BsuRI	GGCC	5 cut(s)	412, 1078, 1451, 1596, 1701
BtgI	CCRYGG	2 cut(s)	859, 1213
BtsCI	GGATG	5 cut(s)	787, 895, 976, 1408, 1612
BtsIMutI	CAGTG	2 cut(s)	1015, 1087
Cac8I	GCNNGC	4 cut(s)	485, 1005, 1891, 2063
CciI	TCATGA	1 cut(s)	256
Cfr10I	RCCGGY	1 cut(s)	535
Cfr13I	GGNCC	3 cut(s)	288, 410, 1077
CseI	GACGC	1 cut(s)	516
Csp6I	GTAC	3 cut(s)	582, 1486, 1946
CviQI	GTAC	3 cut(s)	582, 1486, 1946
DdeI	CTNAG	5 cut(s)	120, 981, 1313, 1329, 1874
DpnI	GATC	6 cut(s)	35, 267, 367, 1145, 1344, 1928
DpnII	GATC	6 cut(s)	33, 265, 365, 1143, 1342, 1926
EaeI	YGGCCR	2 cut(s)	1449, 1594
Eam1104I	CTCTTC	5 cut(s)	59, 318, 1236, 1285, 1314
EarI	CTCTTC	5 cut(s)	59, 318, 1236, 1285, 1314
Ecl136II	GAGCTC	1 cut(s)	1618
Eco130I	CCWWGG	1 cut(s)	1213
Eco24I	GRGCYC	1 cut(s)	1620
Eco47I	GGWCC	1 cut(s)	288
Eco53kI	GAGCTC	1 cut(s)	1618
Eco57I	CTGAAG	2 cut(s)	704, 1692
Eco88I	CYCGRG	2 cut(s)	711, 878
EcoICRI	GAGCTC	1 cut(s)	1618
EcoRI	GAATTC	1 cut(s)	934
EcoT14I	CCWWGG	1 cut(s)	1213
EcoT38I	GRGCYC	1 cut(s)	1620
ErhI	CCWWGG	1 cut(s)	1213
FaqI	GGGAC	3 cut(s)	235, 440, 514
FauI	CCCGC	1 cut(s)	52
FauNDI	CATATG	2 cut(s)	1465, 2023
FbaI	TGATCA	1 cut(s)	265
Fnu4HI	GCNGC	4 cut(s)	106, 125, 128, 1182
FokI	GGATG	5 cut(s)	794, 902, 963, 1415, 1619
FriOI	GRGCYC	1 cut(s)	1620
Fsp4HI	GCNGC	4 cut(s)	106, 125, 128, 1182
FspBI	CTAG	5 cut(s)	1004, 1697, 1802, 1881, 1952
GluI	GCNGC	4 cut(s)	106, 125, 128, 1182
GsuI	CTGGAG	1 cut(s)	1751
HaeIII	GGCC	5 cut(s)	412, 1078, 1451, 1596, 1701
HapII	CCGG	2 cut(s)	167, 536
HgaI	GACGC	1 cut(s)	516
HincII	GTYRAC	1 cut(s)	1024
HindII	GTYRAC	1 cut(s)	1024
HindIII	AAGCTT	1 cut(s)	1310
HpaII	CCGG	2 cut(s)	167, 536
HphI	GGTGA	2 cut(s)	85, 1483
Hpy166II	GTNNAC	7 cut(s)	149, 298, 357, 577, 741, 1016, 1024
Hpy188I	TCNGA	6 cut(s)	33, 144, 514, 640, 933, 1168
Hpy8I	GTNNAC	7 cut(s)	149, 298, 357, 577, 741, 1016, 1024
Hpy99I	CGWCG	1 cut(s)	506
HpyAV	CCTTC	6 cut(s)	18, 106, 769, 1165, 1295, 1475
HpyCH4III	ACNGT	4 cut(s)	361, 581, 1490, 1777
HpyCH4IV	ACGT	1 cut(s)	1455
HpyF10VI	GCNNNNNNNGC	6 cut(s)	136, 755, 982, 1190, 1593, 1667
HpyF3I	CTNAG	5 cut(s)	120, 981, 1313, 1329, 1874
HpySE526I	ACGT	1 cut(s)	1455
Ksp22I	TGATCA	1 cut(s)	265
Kzo9I	GATC	6 cut(s)	33, 265, 365, 1143, 1342, 1926
LguI	GCTCTTC	1 cut(s)	318
LmnI	GCTCC	2 cut(s)	832, 1719
Lsp1109I	GCAGC	1 cut(s)	1193
LweI	GCATC	8 cut(s)	775, 985, 990, 1245, 1396, 1500, 1597, 1854
MaeI	CTAG	5 cut(s)	1004, 1697, 1802, 1881, 1952
MaeII	ACGT	1 cut(s)	1455
MaeIII	GTNAC	7 cut(s)	85, 132, 838, 910, 925, 1490, 1869
MalI	GATC	6 cut(s)	35, 267, 367, 1145, 1344, 1928
MboI	GATC	6 cut(s)	33, 265, 365, 1143, 1342, 1926
MhlI	GDGCHC	3 cut(s)	801, 877, 1620
MlsI	TGGCCA	2 cut(s)	1451, 1596
MluNI	TGGCCA	2 cut(s)	1451, 1596
MlyI	GAGTC	2 cut(s)	154, 703
MmeI	TCCRAC	3 cut(s)	124, 492, 1567
Mox20I	TGGCCA	2 cut(s)	1451, 1596
MscI	TGGCCA	2 cut(s)	1451, 1596
MseI	TTAA	8 cut(s)	77, 345, 566, 753, 1064, 1271, 1308, 1413
MslI	CAYNNNNRTG	1 cut(s)	864
Msp20I	TGGCCA	2 cut(s)	1451, 1596
MspCI	CTTAAG	1 cut(s)	1270
MspI	CCGG	2 cut(s)	167, 536
MspR9I	CCNGG	1 cut(s)	168
Mva1269I	GAATGC	1 cut(s)	1433
MwoI	GCNNNNNNNGC	6 cut(s)	136, 755, 982, 1190, 1593, 1667
NciI	CCSGG	1 cut(s)	168
NcoI	CCATGG	1 cut(s)	1213
NdeI	CATATG	2 cut(s)	1465, 2023
NdeII	GATC	6 cut(s)	33, 265, 365, 1143, 1342, 1926
NheI	GCTAGC	1 cut(s)	1003
NlaIV	GGNNCC	1 cut(s)	1650
NmuCI	GTSAC	2 cut(s)	85, 1869
NspI	RCATGY	4 cut(s)	1977, 2065, 2080, 2090
PaeI	GCATGC	1 cut(s)	2065
PaeR7I	CTCGAG	2 cut(s)	711, 878
PagI	TCATGA	1 cut(s)	256
PciI	ACATGT	1 cut(s)	1973
PciSI	GCTCTTC	1 cut(s)	318
PctI	GAATGC	1 cut(s)	1433
PfeI	GAWTC	8 cut(s)	215, 230, 433, 547, 1226, 1503, 1959, 2018
PkrI	GCNGC	4 cut(s)	107, 126, 129, 1183
Ple19I	CGATCG	1 cut(s)	1146
PleI	GAGTC	2 cut(s)	153, 703
PpsI	GAGTC	2 cut(s)	153, 703
PscI	ACATGT	1 cut(s)	1973
PshBI	ATTAAT	1 cut(s)	753
PsiI	TTATAA	1 cut(s)	1574
Psp124BI	GAGCTC	1 cut(s)	1620
Psp1406I	AACGTT	1 cut(s)	1455
PspN4I	GGNNCC	1 cut(s)	1650
PspPI	GGNCC	3 cut(s)	288, 410, 1077
PspXI	VCTCGAGB	1 cut(s)	711
PvuI	CGATCG	1 cut(s)	1146
RsaI	GTAC	3 cut(s)	583, 1487, 1947
RsaNI	GTAC	3 cut(s)	582, 1486, 1946
RseI	CAYNNNNRTG	1 cut(s)	864
SacI	GAGCTC	1 cut(s)	1620
SapI	GCTCTTC	1 cut(s)	318
SaqAI	TTAA	8 cut(s)	77, 345, 566, 753, 1064, 1271, 1308, 1413
SatI	GCNGC	4 cut(s)	106, 125, 128, 1182
Sau3AI	GATC	6 cut(s)	33, 265, 365, 1143, 1342, 1926
Sau96I	GGNCC	3 cut(s)	288, 410, 1077
SchI	GAGTC	2 cut(s)	154, 703
ScrFI	CCNGG	1 cut(s)	168
SduI	GDGCHC	3 cut(s)	801, 877, 1620
SfaNI	GCATC	8 cut(s)	775, 985, 990, 1245, 1396, 1500, 1597, 1854
Sfr274I	CTCGAG	2 cut(s)	711, 878
SinI	GGWCC	1 cut(s)	288
SlaI	CTCGAG	2 cut(s)	711, 878
SmiMI	CAYNNNNRTG	1 cut(s)	864
SmlI	CTYRAG	3 cut(s)	711, 878, 1270
SmoI	CTYRAG	3 cut(s)	711, 878, 1270
SphI	GCATGC	1 cut(s)	2065
SsiI	CCGC	4 cut(s)	45, 106, 125, 128
SspI	AATATT	1 cut(s)	1591
SspMI	CTAG	5 cut(s)	1004, 1697, 1802, 1881, 1952
SstI	GAGCTC	1 cut(s)	1620
StyD4I	CCNGG	1 cut(s)	166
StyI	CCWWGG	1 cut(s)	1213
TaaI	ACNGT	4 cut(s)	361, 581, 1490, 1777
TaiI	ACGT	1 cut(s)	1458
TaqI	TCGA	7 cut(s)	364, 712, 879, 902, 1146, 1239, 1602
TauI	GCSGC	3 cut(s)	108, 127, 130
TfiI	GAWTC	8 cut(s)	215, 230, 433, 547, 1226, 1503, 1959, 2018
Tru1I	TTAA	8 cut(s)	77, 345, 566, 753, 1064, 1271, 1308, 1413
Tru9I	TTAA	8 cut(s)	77, 345, 566, 753, 1064, 1271, 1308, 1413
TscAI	CASTG	2 cut(s)	1015, 1087
TseFI	GTSAC	2 cut(s)	85, 1869
TseI	GCWGC	1 cut(s)	1181
Tsp45I	GTSAC	2 cut(s)	85, 1869
TspDTI	ATGAA	9 cut(s)	273, 305, 314, 374, 560, 608, 1641, 1776, 2111
TspGWI	ACGGA	1 cut(s)	645
TspRI	CASTG	2 cut(s)	1015, 1087
Vha464I	CTTAAG	1 cut(s)	1270
VpaK11BI	GGWCC	1 cut(s)	288
VspI	ATTAAT	1 cut(s)	753
XapI	RAATTY	7 cut(s)	260, 595, 934, 1132, 1763, 2054, 2099
XbaI	TCTAGA	1 cut(s)	1951
XceI	RCATGY	4 cut(s)	1977, 2065, 2080, 2090
XhoI	CTCGAG	2 cut(s)	711, 878
XspI	CTAG	5 cut(s)	1004, 1697, 1802, 1881, 1952

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.