Rh4AG134900

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0003055
Physical Location & Seq
Reverse (-)
29500375 .. 29502837
2463 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG134900.1

Sequence Viewer

Length: 2463 bp
ATGGAGCTGAGAAGGGTTTCAATCTCGAAACCTTGCTCTTTCTTAATCAAACGCCCATTAAGCTGCGTCCCACGTCCTCAGCCTCCGGCGCCGCCGCCACCGAACAACCAGAGATTACTTGATCGGGTATCCTCTGTTCTCTCAAACTCATCTTTCAAGTACCCTCAATGTAGATCTCTCATATCCCTCTTGTCCCCTCATGAATTCGATGCCCTCTTCTATTCCGTCGCCGCTTCCCCCTCCTCCAATGTCAACCCCAAAACTGCTCTCCGTTTCTTTCACTTCGCTTCTAAAGCTTTCAACTTCCATTTCACCCTCGCCTCTTATTGCCTTTTGGTTCGTGTACTAATTCTTTCCAATCTTAACTCGCCTGCGAGATTGCTTTTGATCCGCTTGATTGATGGCAATGTGCAAGCTTTGTATGCTCTCCCGCCCACTGATAGGCACATTGAGATAGCCATGGCTATGTCCCACTTCAAAACCGCCTACGAAAGAGCTGCTGTGCTTCAGGCGTTGGATATGTTGATTCATCTTTACTGTACTCAGTTCAAGGATTTGGGTTTTTGTTCTGCCGTTCATGTTTTTGAGTTTTTCTCTAATAAGGCTATGTTTCCGTCCCTCAAGACTTGCCATTTTTTGTTGAATTCTTTAGTCAAGGCTGACCAACTTGATAAGAGCTACCGTGTGTTTGAAGTTCTGTCTCGAGCTGTTTCTCCGGATGTTTACTTGTTTACTACTGCAATTCAAGCATTTTGTAAGGGAGGGAAGGTTGATGATGCAATAGGTTTGTTCTCTAAAATGGAGGCACTTGGCATTGCTCCAAATGTTGTTACTTACAACAATGTTATTCACGGGTTATGTAAGAGCAGAAGATTAGAGGAGGCTTTCCAATTCAAGGACAAGATGGTACAAAACAATGTGAATCCCAGTCTGACAACATATGGTGTGCTCCTTAATGGTTTGATTAAGTTGGAGAAGTTTGACGACGCAAATCATGTTTTGAAGGAAATGTATAGTAAGGGATTTGCCCCCAATGAGGTTATCTATAACATATTGATTGACGGCTATTGTAAAACGGGAAGTACTAGTGAGGCACTGAAGTTAAGGGATGAAATGTTATCCAATGGGGTAACTCCAAATTCTGTTACCATTAACTCGCTACTGCAGGGATTTTGTAAAAGCAACCACTTTGAGCATGCTGAGCAGGTCTTAGATAAGGTGCTATCCAGTGGTTCATCTGTACACCAAGTCGTTTGTTTCTCAGTCATTCACTCGTTATGCAAGAACTCTAGGTTTGATTCTGCACTGAAATTCACAATTGAAATGCTATTAAGAAACTTCAGGCCCAGCGATAACTTGCTTACAACATTGGTTGTTGGGCTCTGTAAAGATGGAAAGCATTCTGAGGCATCTCAGCTTTGGTTTAGGCTATGGGAGAAAGGGTTTGCAGCCAACACAGTGACCTCAAATGCTCTAATTTATGGAGTTTGTGAATCTGGTAGCATGCAAGAGGTTGCTAGGCTACTTAAGGAAATGGTAAAGAGAGGCTTGGTATTGGATAGGATCTCATGCAACACACTCATCTTGGGTTGGTGCAAGGAGGGAAAAGTGGACGAAGGTTTTAAGATTAGGGACTGGATGGGTAAGAAAGGAATTTTGCCAGACACATATACTTACAATTTGCTAATGCATGGTCTATGTAATATGGGAAAAGTGGATGATGCTGTTAAACTTTGGGAGGAGTGCAGAAAACATGGTCTTGCCGATGTCTATACATATGGGGTGATGATAGATGGGTACTGTAGAGCTGACAGAATTAAAGACGGTGAAGACCTATTTATTGAGTTGGTGACTAAGAAACTTCAGCTGAATTTCATTGTTTATAATACGCTTATAAGAGCATACTGTACAAATGCGAACGTGATTGGAGCCCTTGGTCTCTGCTGCGAGATGAAAAAGAAGGGTATTGAACCAACTTGTACCACATATTCTTCTCTTATACATGGGATGTGCAATATTGGTAATGTCGAAGATGCAGAATACCTTCTTGATCAAATGAGGAAGGAGGGTTTGTTGCCCGATGTTGTTTGCTACACTGCACTAATTCATGGTTATTGTAAGCTAGGCCAGATGGATAAAGTAGGGAGTGTTCTTGGAGAGATGTCTTCATATAACGTACAACCTAATAAGATTACATACACTGTCATGATTGATGGGCATTGTAAACTAGGTAATATGGAAGAAGCAACTAAACTTCTATGCGAGATGGAAAAAAAGGGAATTGTCCCGGATGCTGTCACTTACAATGCCTTAACAAATGGATTTTGCAAGGAAAGGATGGTGGAAGAAGCTTTTGAAGTTTGTGATCAAATGTTCAGTAAAGGTCTAGCTTTAGATGAAATTACCTATACGACATTGGTTAGTGGGCTGCATCAAACAGCTACATGTGCAGACGAGGAATAA

Protein Analysis

820

Amino Acids

91.74

Weight (kDa)

7.81

Isoelectric Point (pI)

30.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_long PF17177 180 - 319 5e-09 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 234 - 283 2.1e-07 Pentatricopeptide repeat domain
PPR_1 PF12854 237 - 268 3.5e-09 PPR repeat
PPR_2 PF13041 239 - 288 3.8e-15 PPR repeat family
PPR_1 PF12854 271 - 303 1e-11 PPR repeat
PPR_2 PF13041 274 - 323 2.2e-16 PPR repeat family
PPR PF01535 277 - 307 2.1e-06 PPR repeat
PPR_3 PF13812 299 - 356 1.9e-07 Pentatricopeptide repeat domain
TPR_24 PF23276 330 - 437 8.1e-09 Fungal tetratrico peptide repeats
PPR_3 PF13812 333 - 390 2.7e-07 Pentatricopeptide repeat domain
PPR_1 PF12854 340 - 372 4.8e-11 PPR repeat
PPR_2 PF13041 344 - 393 7.7e-18 PPR repeat family
PPR PF01535 347 - 377 8.2e-09 PPR repeat
PPR_1 PF12854 375 - 406 4.2e-06 PPR repeat
PPR_3 PF13812 507 - 564 7.9e-07 Pentatricopeptide repeat domain
PPR_2 PF13041 521 - 568 5.1e-16 PPR repeat family
PPR_1 PF12854 550 - 581 3.3e-11 PPR repeat
PPR_2 PF13041 554 - 602 1.2e-14 PPR repeat family
PPR PF01535 557 - 587 1.6e-06 PPR repeat
PPR_1 PF12854 588 - 615 5.1e-06 PPR repeat
PPR_long PF17177 612 - 734 3.4e-09 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 612 - 668 1.5e-09 Pentatricopeptide repeat domain
TPR_24 PF23276 618 - 713 1.8e-08 Fungal tetratrico peptide repeats
PPR_2 PF13041 626 - 672 3.6e-14 PPR repeat family
PPR PF01535 627 - 656 1e-05 PPR repeat
PPR_3 PF13812 650 - 705 9.3e-11 Pentatricopeptide repeat domain
PPR_1 PF12854 654 - 687 2.1e-11 PPR repeat
PPR PF01535 662 - 691 2.4e-06 PPR repeat
PPR_2 PF13041 662 - 699 7.8e-09 PPR repeat family
PPR_1 PF12854 690 - 713 6.5e-08 PPR repeat
PPR_2 PF13041 693 - 742 1.2e-17 PPR repeat family
PPR PF01535 696 - 725 2.1e-06 PPR repeat
PPR_3 PF13812 716 - 773 1.4e-09 Pentatricopeptide repeat domain
PPR_long PF17177 717 - 807 6.6e-10 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 725 - 757 7.6e-11 PPR repeat
PPR PF01535 731 - 761 5.1e-10 PPR repeat
PPR_2 PF13041 731 - 777 3.8e-17 PPR repeat family
PPR_1 PF12854 759 - 791 1.5e-11 PPR repeat
PPR_2 PF13041 763 - 811 4.3e-14 PPR repeat family
PPR PF01535 766 - 796 3.2e-07 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1884, 1895
Acc36I ACCTGC 1 cut(s) 1195
AccB1I GGYRCC 1 cut(s) 88
AccIII TCCGGA 1 cut(s) 715
AciI CCGC 6 cut(s) 92, 95, 231, 391, 431, 483
AclWI GGATC 2 cut(s) 382, 1571
AcsI RAATTY 6 cut(s) 203, 643, 1138, 1310, 1653, 1870
AcuI CTGAAG 4 cut(s) 491, 1118, 1324, 1847
AcyI GRCGYC 1 cut(s) 89
AfiI CCNNNNNNNGG 3 cut(s) 441, 895, 1036
AflII CTTAAG 1 cut(s) 1526
AflIII ACRYGT 1 cut(s) 2444
AhlI ACTAGT 1 cut(s) 1085
AjiI CACGTC 1 cut(s) 74
Alw21I GWGCWC 1 cut(s) 951
Alw26I GTCTC 2 cut(s) 705, 1943
AlwI GGATC 2 cut(s) 382, 1571
Ama87I CYCGRG 1 cut(s) 702
Aor13HI TCCGGA 1 cut(s) 715
AoxI GGCC 2 cut(s) 1343, 2125
ApeKI GCWGC 5 cut(s) 63, 497, 1448, 1944, 2428
ApoI RAATTY 6 cut(s) 203, 643, 1138, 1310, 1653, 1870
Asp700I GAANNNNTTC 3 cut(s) 16, 1399, 2043
AspLEI GCGC 1 cut(s) 91
AspS9I GGNCC 1 cut(s) 1344
AsuC2I CCSGG 1 cut(s) 2288
AsuHPI GGTGA 4 cut(s) 304, 1795, 1838, 1861
AvaI CYCGRG 1 cut(s) 702
BanI GGYRCC 1 cut(s) 88
BanII GRGCYC 2 cut(s) 1383, 1933
BbsI GAAGAC 2 cut(s) 1836, 2157
Bbv12I GWGCWC 1 cut(s) 951
BbvCI CCTCAGC 1 cut(s) 78
BbvI GCAGC 5 cut(s) 50, 484, 1460, 1931, 2415
BccI CCATC 9 cut(s) 395, 898, 1385, 1633, 1787, 2125, 2207, 2260, 2332
BceAI ACGGC 2 cut(s) 557, 1078
BcgI CGANNNNNNTGC 2 cut(s) 479, 513
BciVI GTATCC 1 cut(s) 139
BclI TGATCA 2 cut(s) 2050, 2365
BcnI CCSGG 1 cut(s) 2288
BcoDI GTCTC 2 cut(s) 705, 1943
BcuI ACTAGT 1 cut(s) 1085
BfaI CTAG 6 cut(s) 1086, 1290, 1518, 2123, 2228, 2387
BfmI CTRYAG 2 cut(s) 1163, 1801
BfoI RGCGCY 1 cut(s) 92
BfrI CTTAAG 1 cut(s) 1526
BfuAI ACCTGC 1 cut(s) 1195
BfuI GTATCC 1 cut(s) 139
BglII AGATCT 1 cut(s) 173
BisI GCNGC 8 cut(s) 64, 92, 95, 231, 498, 1449, 1945, 2429
BlpI GCTNAGC 1 cut(s) 1200
BlsI GCNGC 8 cut(s) 65, 93, 96, 232, 499, 1450, 1946, 2430
BmcAI AGTACT 1 cut(s) 1084
Bme1390I CCNGG 1 cut(s) 2288
BmeT110I CYCGRG 1 cut(s) 702
BmgBI CACGTC 1 cut(s) 74
BmgT120I GGNCC 1 cut(s) 1344
BmiI GGNNCC 2 cut(s) 90, 1930
BmrFI CCNGG 1 cut(s) 2288
BmrI ACTGGG 1 cut(s) 921
BmsI GCATC 7 cut(s) 199, 766, 1418, 1711, 2023, 2281, 2440
BmuI ACTGGG 1 cut(s) 921
BpiI GAAGAC 2 cut(s) 1836, 2157
BplI GAGNNNNNCTC 2 cut(s) 578, 610
Bpu10I CCTNAGC 1 cut(s) 78
Bpu1102I GCTNAGC 1 cut(s) 1200
BpuEI CTTGAG 1 cut(s) 605
BpuMI CCSGG 1 cut(s) 2288
BsaHI GRCGYC 1 cut(s) 89
BsaI GGTCTC 1 cut(s) 1943
BsaJI CCNNGG 2 cut(s) 459, 1933
BsaWI WCCGGW 1 cut(s) 715
BsaXI ACNNNNNCTCC 6 cut(s) 753, 783, 1427, 1457, 2057, 2087
Bsc4I CCNNNNNNNGG 3 cut(s) 441, 895, 1036
Bse1I ACTGG 3 cut(s) 927, 1227, 1640
Bse3DI GCAATG 2 cut(s) 412, 813
BseAI TCCGGA 1 cut(s) 715
BseDI CCNNGG 2 cut(s) 459, 1933
BseGI GGATG 7 cut(s) 724, 1114, 1644, 1723, 2013, 2296, 2343
BseLI CCNNNNNNNGG 3 cut(s) 441, 895, 1036
BseMI GCAATG 2 cut(s) 412, 813
BseMII CTCAG 6 cut(s) 92, 557, 1191, 1275, 1395, 1427
BseNI ACTGG 3 cut(s) 927, 1227, 1640
BseRI GAGGAG 3 cut(s) 232, 893, 1754
BseXI GCAGC 5 cut(s) 50, 484, 1460, 1931, 2415
BseYI CCCAGC 1 cut(s) 1346
BsgI GTGCAG 3 cut(s) 1287, 1765, 2082
BshFI GGCC 2 cut(s) 1345, 2127
BshNI GGYRCC 1 cut(s) 88
BsiHKAI GWGCWC 1 cut(s) 951
BsiHKCI CYCGRG 1 cut(s) 702
BsiSI CCGG 3 cut(s) 86, 716, 2288
BslFI GGGAC 6 cut(s) 53, 178, 454, 601, 1646, 2270
BslI CCNNNNNNNGG 3 cut(s) 441, 895, 1036
BsmAI GTCTC 2 cut(s) 705, 1943
BsmFI GGGAC 6 cut(s) 53, 178, 454, 601, 1646, 2270
BsmI GAATGC 1 cut(s) 1399
BsnI GGCC 2 cut(s) 1345, 2127
Bso31I GGTCTC 1 cut(s) 1943
BsoBI CYCGRG 1 cut(s) 702
Bsp1286I GDGCHC 3 cut(s) 951, 1383, 1933
Bsp13I TCCGGA 1 cut(s) 715
Bsp1407I TGTACA 2 cut(s) 1240, 1907
Bsp143I GATC 6 cut(s) 121, 173, 387, 1563, 2050, 2365
Bsp1720I GCTNAGC 1 cut(s) 1200
Bsp19I CCATGG 1 cut(s) 459
BspACI CCGC 6 cut(s) 92, 95, 231, 391, 431, 483
BspANI GGCC 2 cut(s) 1345, 2127
BspCNI CTCAG 6 cut(s) 91, 556, 1192, 1274, 1396, 1426
BspEI TCCGGA 1 cut(s) 715
BspHI TCATGA 2 cut(s) 199, 2205
BspLI GGNNCC 2 cut(s) 90, 1930
BspMAI CTGCAG 1 cut(s) 1167
BspMI ACCTGC 1 cut(s) 1195
BspPI GGATC 2 cut(s) 382, 1571
BspT107I GGYRCC 1 cut(s) 88
BspTI CTTAAG 1 cut(s) 1526
BspTNI GGTCTC 1 cut(s) 1943
BsrDI GCAATG 2 cut(s) 412, 813
BsrGI TGTACA 2 cut(s) 1240, 1907
BsrI ACTGG 3 cut(s) 927, 1227, 1640
BssECI CCNNGG 2 cut(s) 459, 1933
BssMI GATC 6 cut(s) 121, 173, 387, 1563, 2050, 2365
BssNI GRCGYC 1 cut(s) 89
BssT1I CCWWGG 2 cut(s) 459, 1933
Bst4CI ACNGT 7 cut(s) 539, 683, 1459, 1802, 1826, 1907, 2203
Bst6I CTCTTC 1 cut(s) 221
BstACI GRCGYC 1 cut(s) 89
BstAFI CTTAAG 1 cut(s) 1526
BstAUI TGTACA 2 cut(s) 1240, 1907
BstC8I GCNNGC 4 cut(s) 372, 414, 1197, 1505
BstDEI CTNAG 9 cut(s) 8, 78, 543, 1200, 1210, 1261, 1404, 1413, 1854
BstDSI CCRYGG 1 cut(s) 459
BstF5I GGATG 7 cut(s) 724, 1114, 1644, 1723, 2013, 2296, 2343
BstH2I RGCGCY 1 cut(s) 92
BstHHI GCGC 1 cut(s) 91
BstKTI GATC 6 cut(s) 124, 176, 390, 1566, 2053, 2368
BstMAI GTCTC 2 cut(s) 705, 1943
BstMBI GATC 6 cut(s) 121, 173, 387, 1563, 2050, 2365
BstMWI GCNNNNNNNGC 7 cut(s) 60, 88, 293, 422, 746, 1201, 2447
BstNSI RCATGY 3 cut(s) 1199, 1507, 2448
BstSCI CCNGG 1 cut(s) 2286
BstSFI CTRYAG 2 cut(s) 1163, 1801
BstV1I GCAGC 5 cut(s) 50, 484, 1460, 1931, 2415
BstV2I GAAGAC 2 cut(s) 1836, 2157
BstX2I RGATCY 2 cut(s) 173, 1563
BstYI RGATCY 2 cut(s) 173, 1563
BsuI GTATCC 1 cut(s) 139
BsuRI GGCC 2 cut(s) 1345, 2127
BtgI CCRYGG 1 cut(s) 459
BtrI CACGTC 1 cut(s) 74
BtsCI GGATG 7 cut(s) 724, 1114, 1644, 1723, 2013, 2296, 2343
BtsI GCAGTG 1 cut(s) 2094
BtsIMutI CAGTG 7 cut(s) 435, 1094, 1234, 1304, 1464, 2094, 2199
BveI ACCTGC 1 cut(s) 1195
Cac8I GCNNGC 4 cut(s) 372, 414, 1197, 1505
CciI TCATGA 2 cut(s) 199, 2205
CfoI GCGC 1 cut(s) 91
Cfr13I GGNCC 1 cut(s) 1344
CseI GACGC 2 cut(s) 55, 995
DdeI CTNAG 9 cut(s) 8, 78, 543, 1200, 1210, 1261, 1404, 1413, 1854
DinI GGCGCC 1 cut(s) 90
DpnI GATC 6 cut(s) 123, 175, 389, 1565, 2052, 2367
DpnII GATC 6 cut(s) 121, 173, 387, 1563, 2050, 2365
Eam1104I CTCTTC 1 cut(s) 221
EarI CTCTTC 1 cut(s) 221
Eco130I CCWWGG 2 cut(s) 459, 1933
Eco24I GRGCYC 2 cut(s) 1383, 1933
Eco31I GGTCTC 1 cut(s) 1943
Eco57I CTGAAG 4 cut(s) 491, 1118, 1324, 1847
Eco88I CYCGRG 1 cut(s) 702
EcoRI GAATTC 2 cut(s) 203, 643
EcoT14I CCWWGG 2 cut(s) 459, 1933
EcoT22I ATGCAT 1 cut(s) 1692
EcoT38I GRGCYC 2 cut(s) 1383, 1933
EgeI GGCGCC 1 cut(s) 90
EheI GGCGCC 1 cut(s) 90
ErhI CCWWGG 2 cut(s) 459, 1933
FalI AAGNNNNNCTT 2 cut(s) 1532, 1564
FaqI GGGAC 6 cut(s) 53, 178, 454, 601, 1646, 2270
FauI CCCGC 1 cut(s) 438
FauNDI CATATG 2 cut(s) 940, 1777
FbaI TGATCA 2 cut(s) 2050, 2365
Fnu4HI GCNGC 8 cut(s) 64, 92, 95, 231, 498, 1449, 1945, 2429
FokI GGATG 7 cut(s) 731, 1121, 1651, 1730, 2020, 2303, 2350
FriOI GRGCYC 2 cut(s) 1383, 1933
Fsp4HI GCNGC 8 cut(s) 64, 92, 95, 231, 498, 1449, 1945, 2429
FspBI CTAG 6 cut(s) 1086, 1290, 1518, 2123, 2228, 2387
GlaI GCGC 1 cut(s) 90
GluI GCNGC 8 cut(s) 64, 92, 95, 231, 498, 1449, 1945, 2429
GsaI CCCAGC 1 cut(s) 1350
HaeII RGCGCY 1 cut(s) 92
HaeIII GGCC 2 cut(s) 1345, 2127
HapII CCGG 3 cut(s) 86, 716, 2288
HgaI GACGC 2 cut(s) 55, 995
HhaI GCGC 1 cut(s) 91
Hin1I GRCGYC 1 cut(s) 89
Hin6I GCGC 1 cut(s) 89
HinP1I GCGC 1 cut(s) 89
HincII GTYRAC 1 cut(s) 253
HindII GTYRAC 1 cut(s) 253
HindIII AAGCTT 3 cut(s) 294, 414, 2349
HinfI GANTC 4 cut(s) 526, 922, 1298, 1493
HpaII CCGG 3 cut(s) 86, 716, 2288
HphI GGTGA 4 cut(s) 304, 1795, 1838, 1861
Hpy166II GTNNAC 7 cut(s) 253, 344, 724, 732, 1243, 1612, 2225
Hpy188I TCNGA 2 cut(s) 933, 1405
Hpy188III TCNNGA 7 cut(s) 25, 200, 622, 702, 716, 2048, 2206
Hpy8I GTNNAC 7 cut(s) 253, 344, 724, 732, 1243, 1612, 2225
Hpy99I CGWCG 2 cut(s) 230, 989
HpyAV CCTTC 7 cut(s) 6, 760, 997, 1610, 1954, 2054, 2056
HpyCH4III ACNGT 7 cut(s) 539, 683, 1459, 1802, 1826, 1907, 2203
HpyCH4IV ACGT 3 cut(s) 73, 1920, 2175
HpyF10VI GCNNNNNNNGC 7 cut(s) 60, 88, 293, 422, 746, 1201, 2447
HpyF3I CTNAG 9 cut(s) 8, 78, 543, 1200, 1210, 1261, 1404, 1413, 1854
HpySE526I ACGT 3 cut(s) 73, 1920, 2175
Hsp92I GRCGYC 1 cut(s) 89
HspAI GCGC 1 cut(s) 89
KasI GGCGCC 1 cut(s) 88
Kpn2I TCCGGA 1 cut(s) 715
Ksp22I TGATCA 2 cut(s) 2050, 2365
Kzo9I GATC 6 cut(s) 121, 173, 387, 1563, 2050, 2365
LmnI GCTCC 4 cut(s) 4, 823, 954, 1928
Lsp1109I GCAGC 5 cut(s) 50, 484, 1460, 1931, 2415
LweI GCATC 7 cut(s) 199, 766, 1418, 1711, 2023, 2281, 2440
MaeI CTAG 6 cut(s) 1086, 1290, 1518, 2123, 2228, 2387
MaeII ACGT 3 cut(s) 73, 1920, 2175
MaeIII GTNAC 6 cut(s) 829, 1129, 1144, 1459, 1849, 2296
MalI GATC 6 cut(s) 123, 175, 389, 1565, 2052, 2367
MboI GATC 6 cut(s) 121, 173, 387, 1563, 2050, 2365
MboII GAAGA 8 cut(s) 208, 882, 1841, 1983, 2042, 2157, 2252, 2357
MfeI CAATTG 1 cut(s) 1317
MflI RGATCY 2 cut(s) 173, 1563
MhlI GDGCHC 3 cut(s) 951, 1383, 1933
Mly113I GGCGCC 1 cut(s) 89
MmeI TCCRAC 2 cut(s) 495, 951
Mph1103I ATGCAT 1 cut(s) 1692
MroI TCCGGA 1 cut(s) 715
MroXI GAANNNNTTC 3 cut(s) 16, 1399, 2043
MslI CAYNNNNRTG 2 cut(s) 464, 2204
MspA1I CMGCKG 1 cut(s) 1867
MspCI CTTAAG 1 cut(s) 1526
MspI CCGG 3 cut(s) 86, 716, 2288
MspR9I CCNGG 1 cut(s) 2288
MunI CAATTG 1 cut(s) 1317
Mva1269I GAATGC 1 cut(s) 1399
MwoI GCNNNNNNNGC 7 cut(s) 60, 88, 293, 422, 746, 1201, 2447
NarI GGCGCC 1 cut(s) 89
NciI CCSGG 1 cut(s) 2288
NcoI CCATGG 1 cut(s) 459
NdeI CATATG 2 cut(s) 940, 1777
NdeII GATC 6 cut(s) 121, 173, 387, 1563, 2050, 2365
NlaIV GGNNCC 2 cut(s) 90, 1930
NmuCI GTSAC 3 cut(s) 1459, 1849, 2296
NsiI ATGCAT 1 cut(s) 1692
NspI RCATGY 3 cut(s) 1199, 1507, 2448
PaeI GCATGC 2 cut(s) 1199, 1507
PaeR7I CTCGAG 1 cut(s) 702
PagI TCATGA 2 cut(s) 199, 2205
PciI ACATGT 1 cut(s) 2444
PctI GAATGC 1 cut(s) 1399
PdmI GAANNNNTTC 3 cut(s) 16, 1399, 2043
PfeI GAWTC 4 cut(s) 526, 922, 1298, 1493
PfoI TCCNGGA 1 cut(s) 2286
PkrI GCNGC 8 cut(s) 65, 93, 96, 232, 499, 1450, 1946, 2430
PluTI GGCGCC 1 cut(s) 92
PscI ACATGT 1 cut(s) 2444
PsiI TTATAA 2 cut(s) 1884, 1895
PspFI CCCAGC 1 cut(s) 1346
PspN4I GGNNCC 2 cut(s) 90, 1930
PspPI GGNCC 1 cut(s) 1344
PsrI GAACNNNNNNTAC 4 cut(s) 120, 152, 2133, 2165
PstI CTGCAG 1 cut(s) 1167
PsuI RGATCY 2 cut(s) 173, 1563
PvuII CAGCTG 1 cut(s) 1867
RseI CAYNNNNRTG 2 cut(s) 464, 2204
SatI GCNGC 8 cut(s) 64, 92, 95, 231, 498, 1449, 1945, 2429
Sau3AI GATC 6 cut(s) 121, 173, 387, 1563, 2050, 2365
Sau96I GGNCC 1 cut(s) 1344
ScaI AGTACT 1 cut(s) 1084
ScrFI CCNGG 1 cut(s) 2288
SduI GDGCHC 3 cut(s) 951, 1383, 1933
SfaNI GCATC 7 cut(s) 199, 766, 1418, 1711, 2023, 2281, 2440
SfcI CTRYAG 2 cut(s) 1163, 1801
SfoI GGCGCC 1 cut(s) 90
Sfr274I CTCGAG 1 cut(s) 702
SlaI CTCGAG 1 cut(s) 702
SmiMI CAYNNNNRTG 2 cut(s) 464, 2204
SmlI CTYRAG 3 cut(s) 620, 702, 1526
SmoI CTYRAG 3 cut(s) 620, 702, 1526
SpeI ACTAGT 1 cut(s) 1085
SphI GCATGC 2 cut(s) 1199, 1507
SsiI CCGC 6 cut(s) 92, 95, 231, 391, 431, 483
SspDI GGCGCC 1 cut(s) 88
SspI AATATT 1 cut(s) 2017
SspMI CTAG 6 cut(s) 1086, 1290, 1518, 2123, 2228, 2387
StyD4I CCNGG 1 cut(s) 2286
StyI CCWWGG 2 cut(s) 459, 1933
TaaI ACNGT 7 cut(s) 539, 683, 1459, 1802, 1826, 1907, 2203
TaiI ACGT 3 cut(s) 76, 1923, 2178
TaqI TCGA 4 cut(s) 26, 207, 703, 2028
TatI WGTACW 5 cut(s) 343, 539, 1082, 1240, 1907
TauI GCSGC 3 cut(s) 94, 97, 233
TfiI GAWTC 4 cut(s) 526, 922, 1298, 1493
TscAI CASTG 7 cut(s) 442, 1101, 1234, 1311, 1464, 2101, 2206
TseFI GTSAC 3 cut(s) 1459, 1849, 2296
TseI GCWGC 5 cut(s) 63, 497, 1448, 1944, 2428
Tsp45I GTSAC 3 cut(s) 1459, 1849, 2296
TspGWI ACGGA 3 cut(s) 214, 260, 603
TspRI CASTG 7 cut(s) 442, 1101, 1234, 1311, 1464, 2101, 2206
Vha464I CTTAAG 1 cut(s) 1526
XapI RAATTY 6 cut(s) 203, 643, 1138, 1310, 1653, 1870
XceI RCATGY 3 cut(s) 1199, 1507, 2448
XhoI CTCGAG 1 cut(s) 702
XmnI GAANNNNTTC 3 cut(s) 16, 1399, 2043
XspI CTAG 6 cut(s) 1086, 1290, 1518, 2123, 2228, 2387
ZrmI AGTACT 1 cut(s) 1084
Zsp2I ATGCAT 1 cut(s) 1692
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.