Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0003055

Physical Location & Seq

Genomic Coordinates Reverse (-)

11690058 .. 11690744

Gene Structure 687 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0147700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGTCATCGGAATCTTTTGACAAATTACTGGTGATGTTATGGAGTATTTGGAAGAACAGGAATGATAAGTTGTGGAGAGATCATTCGCTTAATGGATCTGGACTGGTAGCCACGGCCATGGCTTGGTTTGAGGAGTACTCTCGTGCTCATCGCTTGTCTAAAGCCACGAATGGGTGTCAACTTGTCCACCGGAAACAGTGGACTGCCCCTGCTGAAGATATTCTCAAACTGAATGTTGATGGAGCTTTCTTTTCTCCCATTCCTTATGGGGGTACAGGTGGGGTTATTCGGAATGCGCAGGGCCTATTTGTTGCTGCATTCTCTCACAGGGCTAACTTTGTTAGATCACCCCTGCATATAGAGCTCCTAGCTATAAAGAATGGATTAGAATTATTGATTGCCTTGAATATCACTCAGGCAGTGGTAGAGAGTGATTGCCTTATCGCGGTACAAGCTATAAATTCATTAGCTGACGACCTGTCTGATTTGGGAGCTCTGATCTCAGAGATTAAAGCTTTATTAGTTACTGTAGGAGCAGCTGCAGTTTATTTTGTTCCTAGACAGGCAAACAGAGTTGCACATCGTTTAGCTAGTCATAGCTTTGATTCAAACATTCGTGTAGATTGGTTTACCTCTGCTCCAGACTTCTTACTGGATGCCCTCATGTACGACCTTATTCGTACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

228

Amino Acids

25.22

Weight (kDa)

6.65

Isoelectric Point (pI)

34.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	78 - 199	2.8e-21	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003055)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19440 AT4G19440 AT4G19440 AT4G19440
fragaria_vesca	FvH4_4g10410 FvH4_4g10410 FvH4_4g10440 FvH4_5g24430 FvH4_5g24430 FvH4_5g24430 FvH4_5g24430
malus_domestica	MD06G1022200.v1.1
prunus_persica	Prupe.3G018200_v2.0.a1
pyrus_communis	pycom06g01610
rosa_chinensis	RchiOBHm_Chr4g0405931 RchiOBHm_Chr7g0214821 RchiOBHm_Chr7g0219861
rosa_laevigata	RLG00000002716 RLG00000008810
rosa_multiflora	Rmu_sc0002308.1_g000021 Rmu_sc0019702.1_g000004 Rmu_ssc0000087.1_g000071
rosa_roxburghii	Rroxscaffold_3G00244980 Rroxscaffold_5G00350670
rosa_rugosa	Rorug04G0064100 Rorug07G0147600 Rorug07G0147700 Rorug07G0147800
rosa_samantha	Rh4AG134900 Rh4BG130500 Rh4CG142300 Rh4DG129200 Rh7AG284500 Rh7BG275300 Rh7CG303700 Rh7DG287900
rosa_wichuraiana	Rw4G010980 Rw7G024260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	297
AccB7I	CCANNNNNTGG	1 cut(s)	123
AccII	CGCG	1 cut(s)	446
AciI	CCGC	1 cut(s)	446
AclWI	GGATC	1 cut(s)	103
AcoI	YGGCCR	1 cut(s)	114
AcsI	RAATTY	1 cut(s)	460
AcuI	CTGAAG	1 cut(s)	234
AfaI	GTAC	5 cut(s)	137, 274, 450, 668, 682
AfiI	CCNNNNNNNGG	4 cut(s)	123, 171, 269, 445
AgsI	TTSAA	2 cut(s)	406, 609
AhdI	GACNNNNNGTC	1 cut(s)	478
Alw21I	GWGCWC	3 cut(s)	148, 366, 496
AlwI	GGATC	1 cut(s)	103
AoxI	GGCC	2 cut(s)	114, 301
ApeKI	GCWGC	3 cut(s)	314, 536, 539
ApoI	RAATTY	1 cut(s)	460
Asp700I	GAANNNNTTC	1 cut(s)	219
AspLEI	GCGC	1 cut(s)	298
AspS9I	GGNCC	1 cut(s)	301
AsuHPI	GGTGA	2 cut(s)	43, 339
BanII	GRGCYC	2 cut(s)	366, 496
BauI	CACGAG	1 cut(s)	141
Bbv12I	GWGCWC	3 cut(s)	148, 366, 496
BbvI	GCAGC	3 cut(s)	301, 526, 548
BccI	CCATC	1 cut(s)	233
BceAI	ACGGC	1 cut(s)	129
BfaI	CTAG	3 cut(s)	368, 558, 591
BfmI	CTRYAG	2 cut(s)	528, 540
BisI	GCNGC	3 cut(s)	315, 537, 540
BlsI	GCNGC	3 cut(s)	316, 538, 541
BmcAI	AGTACT	1 cut(s)	137
BmeRI	GACNNNNNGTC	1 cut(s)	478
BmgT120I	GGNCC	1 cut(s)	301
BmsI	GCATC	1 cut(s)	646
BplI	GAGNNNNNCTC	2 cut(s)	122, 154
BpmI	CTGGAG	1 cut(s)	624
BsaJI	CCNNGG	2 cut(s)	111, 117
BsaWI	WCCGGW	1 cut(s)	189
BsaXI	ACNNNNNCTCC	2 cut(s)	622, 652
Bsc4I	CCNNNNNNNGG	4 cut(s)	123, 171, 269, 445
Bse1I	ACTGG	3 cut(s)	33, 108, 657
BseDI	CCNNGG	2 cut(s)	111, 117
BseGI	GGATG	1 cut(s)	661
BseLI	CCNNNNNNNGG	4 cut(s)	123, 171, 269, 445
BseMII	CTCAG	2 cut(s)	428, 516
BseNI	ACTGG	3 cut(s)	33, 108, 657
BseRI	GAGGAG	1 cut(s)	146
BseXI	GCAGC	3 cut(s)	301, 526, 548
Bsh1236I	CGCG	1 cut(s)	446
BshFI	GGCC	2 cut(s)	116, 303
BsiHKAI	GWGCWC	3 cut(s)	148, 366, 496
BsiSI	CCGG	1 cut(s)	190
BslI	CCNNNNNNNGG	4 cut(s)	123, 171, 269, 445
BsmI	GAATGC	2 cut(s)	298, 317
BsnI	GGCC	2 cut(s)	116, 303
Bsp1286I	GDGCHC	3 cut(s)	148, 366, 496
Bsp143I	GATC	4 cut(s)	79, 95, 344, 498
Bsp19I	CCATGG	1 cut(s)	117
BspACI	CCGC	1 cut(s)	446
BspANI	GGCC	2 cut(s)	116, 303
BspCNI	CTCAG	2 cut(s)	427, 515
BspFNI	CGCG	1 cut(s)	446
BspMAI	CTGCAG	1 cut(s)	544
BspPI	GGATC	1 cut(s)	103
BsrI	ACTGG	3 cut(s)	33, 108, 657
BssECI	CCNNGG	2 cut(s)	111, 117
BssMI	GATC	4 cut(s)	79, 95, 344, 498
BssSI	CACGAG	1 cut(s)	141
BssT1I	CCWWGG	1 cut(s)	117
Bst2BI	CACGAG	1 cut(s)	141
Bst4CI	ACNGT	2 cut(s)	198, 529
BstDEI	CTNAG	2 cut(s)	414, 502
BstDSI	CCRYGG	2 cut(s)	111, 117
BstF5I	GGATG	1 cut(s)	661
BstFNI	CGCG	1 cut(s)	446
BstHHI	GCGC	1 cut(s)	298
BstKTI	GATC	4 cut(s)	82, 98, 347, 501
BstMBI	GATC	4 cut(s)	79, 95, 344, 498
BstMWI	GCNNNNNNNGC	2 cut(s)	361, 452
BstSFI	CTRYAG	2 cut(s)	528, 540
BstUI	CGCG	1 cut(s)	446
BstV1I	GCAGC	3 cut(s)	301, 526, 548
BstX2I	RGATCY	1 cut(s)	95
BstXI	CCANNNNNNTGG	1 cut(s)	118
BstYI	RGATCY	1 cut(s)	95
BsuRI	GGCC	2 cut(s)	116, 303
BtgI	CCRYGG	2 cut(s)	111, 117
BtgZI	GCGATG	1 cut(s)	134
BtsCI	GGATG	1 cut(s)	661
BtsI	GCAGTG	1 cut(s)	426
BtsIMutI	CAGTG	2 cut(s)	203, 426
CfoI	GCGC	1 cut(s)	298
Cfr13I	GGNCC	1 cut(s)	301
Csp6I	GTAC	5 cut(s)	136, 273, 449, 667, 681
CviAII	CATG	2 cut(s)	118, 664
CviQI	GTAC	5 cut(s)	136, 273, 449, 667, 681
DdeI	CTNAG	2 cut(s)	414, 502
DpnI	GATC	4 cut(s)	81, 97, 346, 500
DpnII	GATC	4 cut(s)	79, 95, 344, 498
DriI	GACNNNNNGTC	1 cut(s)	478
EaeI	YGGCCR	1 cut(s)	114
Eam1105I	GACNNNNNGTC	1 cut(s)	478
Ecl136II	GAGCTC	2 cut(s)	364, 494
Eco130I	CCWWGG	1 cut(s)	117
Eco24I	GRGCYC	2 cut(s)	366, 496
Eco53kI	GAGCTC	2 cut(s)	364, 494
Eco57I	CTGAAG	1 cut(s)	234
EcoICRI	GAGCTC	2 cut(s)	364, 494
EcoO109I	RGGNCCY	1 cut(s)	301
EcoT14I	CCWWGG	1 cut(s)	117
EcoT38I	GRGCYC	2 cut(s)	366, 496
ErhI	CCWWGG	1 cut(s)	117
FaeI	CATG	2 cut(s)	121, 667
FaiI	YATR	9 cut(s)	40, 119, 267, 357, 359, 374, 458, 597, 665
FatI	CATG	2 cut(s)	117, 663
Fnu4HI	GCNGC	3 cut(s)	315, 537, 540
FokI	GGATG	1 cut(s)	668
FriOI	GRGCYC	2 cut(s)	366, 496
Fsp4HI	GCNGC	3 cut(s)	315, 537, 540
FspBI	CTAG	3 cut(s)	368, 558, 591
FspI	TGCGCA	1 cut(s)	297
GlaI	GCGC	1 cut(s)	297
GluI	GCNGC	3 cut(s)	315, 537, 540
GsuI	CTGGAG	1 cut(s)	624
HaeIII	GGCC	2 cut(s)	116, 303
HapII	CCGG	1 cut(s)	190
HhaI	GCGC	1 cut(s)	298
Hin1II	CATG	2 cut(s)	121, 667
Hin6I	GCGC	1 cut(s)	296
HinP1I	GCGC	1 cut(s)	296
HincII	GTYRAC	1 cut(s)	179
HindII	GTYRAC	1 cut(s)	179
HindIII	AAGCTT	1 cut(s)	513
HinfI	GANTC	2 cut(s)	11, 605
HpaII	CCGG	1 cut(s)	190
HphI	GGTGA	2 cut(s)	43, 339
Hpy166II	GTNNAC	4 cut(s)	179, 187, 201, 630
Hpy188I	TCNGA	5 cut(s)	10, 291, 484, 498, 505
Hpy188III	TCNNGA	2 cut(s)	99, 641
Hpy8I	GTNNAC	4 cut(s)	179, 187, 201, 630
HpyCH4III	ACNGT	2 cut(s)	198, 529
HpyCH4V	TGCA	4 cut(s)	317, 355, 542, 578
HpyF10VI	GCNNNNNNNGC	2 cut(s)	361, 452
HpyF3I	CTNAG	2 cut(s)	414, 502
Hsp92II	CATG	2 cut(s)	121, 667
HspAI	GCGC	1 cut(s)	296
Kzo9I	GATC	4 cut(s)	79, 95, 344, 498
LmnI	GCTCC	5 cut(s)	242, 369, 491, 533, 643
Lsp1109I	GCAGC	3 cut(s)	301, 526, 548
LweI	GCATC	1 cut(s)	646
MaeI	CTAG	3 cut(s)	368, 558, 591
MaeIII	GTNAC	1 cut(s)	523
MalI	GATC	4 cut(s)	81, 97, 346, 500
MboI	GATC	4 cut(s)	79, 95, 344, 498
MboII	GAAGA	2 cut(s)	64, 227
MflI	RGATCY	1 cut(s)	95
MhlI	GDGCHC	3 cut(s)	148, 366, 496
MluCI	AATT	3 cut(s)	23, 389, 460
MnlI	CCTC	3 cut(s)	124, 643, 671
MroXI	GAANNNNTTC	1 cut(s)	219
MseI	TTAA	3 cut(s)	90, 510, 685
MslI	CAYNNNNRTG	1 cut(s)	116
MspA1I	CMGCKG	1 cut(s)	539
MspI	CCGG	1 cut(s)	190
Mva1269I	GAATGC	2 cut(s)	298, 317
MvnI	CGCG	1 cut(s)	446
MwoI	GCNNNNNNNGC	2 cut(s)	361, 452
NcoI	CCATGG	1 cut(s)	117
NdeII	GATC	4 cut(s)	79, 95, 344, 498
NlaIII	CATG	2 cut(s)	121, 667
NsbI	TGCGCA	1 cut(s)	297
PctI	GAATGC	2 cut(s)	298, 317
PdmI	GAANNNNTTC	1 cut(s)	219
PfeI	GAWTC	2 cut(s)	11, 605
PflMI	CCANNNNNTGG	1 cut(s)	123
PkrI	GCNGC	3 cut(s)	316, 538, 541
Psp124BI	GAGCTC	2 cut(s)	366, 496
PspPI	GGNCC	1 cut(s)	301
PstI	CTGCAG	1 cut(s)	544
PsuI	RGATCY	1 cut(s)	95
PvuII	CAGCTG	1 cut(s)	539
RsaI	GTAC	5 cut(s)	137, 274, 450, 668, 682
RsaNI	GTAC	5 cut(s)	136, 273, 449, 667, 681
RseI	CAYNNNNRTG	1 cut(s)	116
SacI	GAGCTC	2 cut(s)	366, 496
SaqAI	TTAA	3 cut(s)	90, 510, 685
SatI	GCNGC	3 cut(s)	315, 537, 540
Sau3AI	GATC	4 cut(s)	79, 95, 344, 498
Sau96I	GGNCC	1 cut(s)	301
ScaI	AGTACT	1 cut(s)	137
SduI	GDGCHC	3 cut(s)	148, 366, 496
SfaNI	GCATC	1 cut(s)	646
SfcI	CTRYAG	2 cut(s)	528, 540
SmiMI	CAYNNNNRTG	1 cut(s)	116
Sse9I	AATT	3 cut(s)	23, 389, 460
SsiI	CCGC	1 cut(s)	446
SspMI	CTAG	3 cut(s)	368, 558, 591
SstI	GAGCTC	2 cut(s)	366, 496
StyI	CCWWGG	1 cut(s)	117
TaaI	ACNGT	2 cut(s)	198, 529
TasI	AATT	3 cut(s)	23, 389, 460
TatI	WGTACW	1 cut(s)	135
TfiI	GAWTC	2 cut(s)	11, 605
Tru1I	TTAA	3 cut(s)	90, 510, 685
Tru9I	TTAA	3 cut(s)	90, 510, 685
TscAI	CASTG	2 cut(s)	203, 426
TseI	GCWGC	3 cut(s)	314, 536, 539
TspDTI	ATGAA	1 cut(s)	453
TspRI	CASTG	2 cut(s)	203, 426
Van91I	CCANNNNNTGG	1 cut(s)	123
XapI	RAATTY	1 cut(s)	460
XmnI	GAANNNNTTC	1 cut(s)	219
XspI	CTAG	3 cut(s)	368, 558, 591
ZrmI	AGTACT	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.