Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0003055

Physical Location & Seq

Genomic Coordinates Reverse (-)

25817329 .. 25819795

Gene Structure 2467 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G010980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2421 bp

ATGGAGCTGAGAAGGGTTTCAATCTCGAAACCTTGCTCTTTCTTAATCAAACGCCCACTAAGCTGCGTCCCACGTCCTCAGCCTCCGCCGCCGCCGCCGCCGCCGCCGAACAACCAGAGATTACTTGACCGGGTATCCTCTGTTCTCTCAAACTCATCTTTCAAGTACCCTCAATGTAGATCTCTCATATCCCTCTTGTCCCCTCATGAATTCGATGCCCTCTTCTATTCGGTCGCCGCTTCCCCCTCCTCCAATGTCAACCCCAAAACTGCTCTCCGTTTCTTTCACTTCGCTTCTAAAGCTTTCAACTTCCATTTCACCCTCGCCTCTTATTGCCTTTTGGTTCGTGTACTAATTCTTTCCAATCTTAACTCGCCTGCGAGATTGCTTTTGATCCGCTTGATTGATGGCAATGTGCAAGCTTTGTATGCCCTCCCGCCCACTGATAGGCACATTGAGATAGCCATGGCTATGTCCCACTTCAAAACCGCCTACGAAAGAGCTGCTGTGCTTCAGGCGTTGGATATGTTGATTCATCTTTACTGTACTCAGTTCAAGGATTTGGGTTTTTGTTCTGCCGTTCATGTTTTTGAGTTTTTCTCTAATAAGGCTATGTTTCCGTCCCTCAAGACTTGCCATTTTTTGTTGAATTCTCTAGTCAAGGCTGACCAACTTGATAAGAGCTACCGTGTGTTTGAAGTTCTGTTGCGTGCTGTTTCTCCGGATGTTTACTTGTTTACTACTGCAATTCAAGCATTTTGTAAGGGAGGGAAGGTTGATGATGCAATAGGTTTGTTCTCTAAAATGGAGGCACTTGGCATTGCTCCAAATGTTGTTACTTACAACAATGTTATTCACGGGTTATGTAAGAGCAGAAGATTAGAGGAGGCTTTCCAATTCAAGGACAAGATGGTACAAAACAATGTGAATCCCAGTCTGACAACCTATGGTGTGCTCCTTAATGGTTTGATTAAGTTGGACAAGTTTGACGACGCAAATCATGTTTCGAAGGAAATGTATAGTAAGGGATTTGCCCCCAATGAGGTTATCTATAACATATTGATTGACGGCTATTGTAAAACTGGAAGTACTAGTGAGGCACTGAAGTTAAGGGATGAAATGTTATCCAATGGGGTAACTCCAAATTCTGTTACCATTAACTCGCTACTGCAGGGATTTTGTAAAAGCAACCACTTTGAGCATGCTGAGCAGGTCTTAGATAAGGTGCTATCCAATGGTTCATCTGTAGACCAAGTCGTTTGTTTCTCAGTCATTCACTCGTTATGCAAGAACTCTAGGTTTGATTCTGCACTGAAATTCACAATTGAAATGCTATTAAGAAACTTCAGGCCCAGCGATAACTTGCTTACAACATTGGTTGTCGGGCTCTGTAAAGATGGAAAGCATTCTGAGGCATCTCAGCTTTGGTTTAGGCTATGGGAGAAAGGGTTTGCAGCCAACACAGTGACCTCAAATGCTCTAATTTATGGAGTTTGTGAATCTGGTAGCATGCAAGAGGTTGCTAGGCTACTCAAGGAAATGGTAAAGAGAGGCTTGGAGGGAAAAGTGGACGAAGGTTTTAAGATTAAGGACTGGATGGGTAAGAAAGGAATTTTGCCAGACACATATACTTACAATTTGCTAATGCATGGTCTATGTAATATGGGAAAAGTGGATGATGCTGTCAAACTTTGGGAGGAGTGCAGAAAACATGGTCTTGCTGATGTCTATACATATGGGGTGATGATAGATGGGTACTGTAGAGCTGACAGAATTAAAGACGGTGAAGACCTATTTATTGAGTTGGTGACTAAGAAACTACAGCTGAATTTCATTGTTTATAATACGCTTATAAGAGCATACTGTACAAATGCGAACGTGATTGGAGCCCTTGGTCTCTGCTGCGACATGAAAAAGAAGGGTATTGAACCAACTTGTACCACATATTCTTCTCTTATACATGGGATGTGCAATATTGGTAATGTCGAAGATGCAGAATACCTTCTTGATCAAATGAGGAAGGAGGGTTTGTTGCCCGATGTTGTTTGCTACACTGCATTAATTCATGGTTATTGTAAGCTAGGCCAGATGGATAAAGTAGGGAGTGTTCTTGGAGAGATGTCTTCATATAACGTACAACCTAATAAGATTACATACACTGTCATGATTGATGGGCATTGTAAATTAGGTAATATGGAAGAAGCAACTAAACTTCTATGCGAGATGGAAAAAAAGGGAATTGTCCCGGATGCTGTCACTTACAATGCCTTAACAAATGGATTTTGCAAGGAAAGGATGGTGGAAGAAGCTTTTGAAGTTTGTGATCAAATGCTCAGTAAAGGTCTAGCTTTAGATGAAATTACCTATACGACATTGGTTAGTGGGCTGCATCAAACAGCTACATGTGCAGATGAGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

806

Amino Acids

90.06

Weight (kDa)

7.43

Isoelectric Point (pI)

30.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_long	PF17177	182 - 321	1.2e-08	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	238 - 285	3.1e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	239 - 270	3.4e-09	PPR repeat
PPR_2	PF13041	241 - 290	3.8e-15	PPR repeat family
PPR_1	PF12854	273 - 305	9.9e-12	PPR repeat
PPR_2	PF13041	276 - 325	2.1e-16	PPR repeat family
PPR	PF01535	279 - 309	2e-06	PPR repeat
PPR_3	PF13812	301 - 358	1.9e-06	Pentatricopeptide repeat domain
TPR_24	PF23276	335 - 439	1.7e-08	Fungal tetratrico peptide repeats
PPR_3	PF13812	336 - 392	1.1e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	342 - 374	4.7e-11	PPR repeat
PPR_2	PF13041	346 - 395	7.6e-18	PPR repeat family
PPR	PF01535	349 - 379	8.1e-09	PPR repeat
PPR_1	PF12854	377 - 408	4.2e-06	PPR repeat
PPR_2	PF13041	520 - 554	2.3e-09	PPR repeat family
PPR_1	PF12854	536 - 567	3.2e-11	PPR repeat
PPR	PF01535	543 - 573	1.6e-06	PPR repeat
PPR_2	PF13041	544 - 588	9.5e-13	PPR repeat family
PPR_1	PF12854	574 - 601	5e-06	PPR repeat
PPR_long	PF17177	598 - 715	1.1e-08	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	598 - 654	5.1e-09	Pentatricopeptide repeat domain
TPR_24	PF23276	604 - 699	2.9e-08	Fungal tetratrico peptide repeats
PPR_2	PF13041	612 - 658	5.9e-14	PPR repeat family
PPR_3	PF13812	636 - 691	4.9e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	640 - 673	2.1e-11	PPR repeat
PPR	PF01535	648 - 677	2.3e-06	PPR repeat
PPR_2	PF13041	651 - 690	1.5e-09	PPR repeat family
PPR_1	PF12854	676 - 699	6.3e-08	PPR repeat
PPR_2	PF13041	679 - 728	1.1e-17	PPR repeat family
PPR	PF01535	682 - 711	2e-06	PPR repeat
PPR_long	PF17177	699 - 793	1.7e-10	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	702 - 759	1.4e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	711 - 743	7.4e-11	PPR repeat
PPR	PF01535	717 - 747	5e-10	PPR repeat
PPR_2	PF13041	717 - 763	3.4e-17	PPR repeat family
PPR_1	PF12854	745 - 777	1e-11	PPR repeat
PPR_2	PF13041	749 - 797	1.8e-14	PPR repeat family
PPR	PF01535	752 - 782	8.2e-08	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003055)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19440 AT4G19440 AT4G19440 AT4G19440
fragaria_vesca	FvH4_4g10410 FvH4_4g10410 FvH4_4g10440 FvH4_5g24430 FvH4_5g24430 FvH4_5g24430 FvH4_5g24430
malus_domestica	MD06G1022200.v1.1
prunus_persica	Prupe.3G018200_v2.0.a1
pyrus_communis	pycom06g01610
rosa_chinensis	RchiOBHm_Chr4g0405931 RchiOBHm_Chr7g0214821 RchiOBHm_Chr7g0219861
rosa_laevigata	RLG00000002716 RLG00000008810
rosa_multiflora	Rmu_sc0002308.1_g000021 Rmu_sc0019702.1_g000004 Rmu_ssc0000087.1_g000071
rosa_roxburghii	Rroxscaffold_3G00244980 Rroxscaffold_5G00350670
rosa_rugosa	Rorug04G0064100 Rorug07G0147600 Rorug07G0147700 Rorug07G0147800
rosa_samantha	Rh4AG134900 Rh4BG130500 Rh4CG142300 Rh4DG129200 Rh7AG284500 Rh7BG275300 Rh7CG303700 Rh7DG287900
rosa_wichuraiana	Rw4G010980 Rw7G024260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1842, 1853
Acc36I	ACCTGC	1 cut(s)	1201
AccI	GTMKAC	1 cut(s)	1248
AccIII	TCCGGA	1 cut(s)	721
AclWI	GGATC	1 cut(s)	388
AcsI	RAATTY	6 cut(s)	209, 649, 1144, 1316, 1611, 1828
AcuI	CTGAAG	3 cut(s)	497, 1124, 1330
AfaI	GTAC	9 cut(s)	167, 351, 547, 915, 1090, 1757, 1867, 1939, 2136
AfiI	CCNNNNNNNGG	3 cut(s)	447, 901, 1042
AflIII	ACRYGT	1 cut(s)	2402
AhlI	ACTAGT	1 cut(s)	1091
AjiI	CACGTC	1 cut(s)	74
Alw21I	GWGCWC	1 cut(s)	957
Alw26I	GTCTC	1 cut(s)	1901
AlwI	GGATC	1 cut(s)	388
Aor13HI	TCCGGA	1 cut(s)	721
AoxI	GGCC	2 cut(s)	1349, 2083
ApeKI	GCWGC	5 cut(s)	63, 503, 1454, 1902, 2386
ApoI	RAATTY	6 cut(s)	209, 649, 1144, 1316, 1611, 1828
AseI	ATTAAT	1 cut(s)	2060
Asp700I	GAANNNNTTC	3 cut(s)	16, 1405, 2001
AspS9I	GGNCC	1 cut(s)	1350
AsuC2I	CCSGG	2 cut(s)	131, 2246
AsuHPI	GGTGA	4 cut(s)	310, 1753, 1796, 1819
AsuII	TTCGAA	1 cut(s)	1007
BanII	GRGCYC	2 cut(s)	1389, 1891
BbsI	GAAGAC	2 cut(s)	1794, 2115
Bbv12I	GWGCWC	1 cut(s)	957
BbvCI	CCTCAGC	1 cut(s)	78
BbvI	GCAGC	5 cut(s)	50, 490, 1466, 1889, 2373
BccI	CCATC	9 cut(s)	401, 904, 1391, 1591, 1745, 2083, 2165, 2218, 2290
BceAI	ACGGC	2 cut(s)	563, 1084
BcgI	CGANNNNNNTGC	2 cut(s)	485, 519
BciVI	GTATCC	1 cut(s)	145
BclI	TGATCA	2 cut(s)	2008, 2323
BcnI	CCSGG	2 cut(s)	131, 2246
BcoDI	GTCTC	1 cut(s)	1901
BcuI	ACTAGT	1 cut(s)	1091
BfaI	CTAG	6 cut(s)	656, 1092, 1296, 1524, 2081, 2345
BfmI	CTRYAG	4 cut(s)	1169, 1245, 1759, 1820
BfuAI	ACCTGC	1 cut(s)	1201
BfuI	GTATCC	1 cut(s)	145
BglII	AGATCT	1 cut(s)	179
BlpI	GCTNAGC	1 cut(s)	1206
BmcAI	AGTACT	1 cut(s)	1090
Bme1390I	CCNGG	2 cut(s)	131, 2246
BmgBI	CACGTC	1 cut(s)	74
BmgT120I	GGNCC	1 cut(s)	1350
BmiI	GGNNCC	1 cut(s)	1888
BmrFI	CCNGG	2 cut(s)	131, 2246
BmrI	ACTGGG	1 cut(s)	927
BmsI	GCATC	7 cut(s)	205, 772, 1424, 1669, 1981, 2239, 2398
BmuI	ACTGGG	1 cut(s)	927
BpiI	GAAGAC	2 cut(s)	1794, 2115
BplI	GAGNNNNNCTC	2 cut(s)	584, 616
Bpu10I	CCTNAGC	1 cut(s)	78
Bpu1102I	GCTNAGC	1 cut(s)	1206
Bpu14I	TTCGAA	1 cut(s)	1007
BpuEI	CTTGAG	2 cut(s)	611, 1517
BpuMI	CCSGG	2 cut(s)	131, 2246
BsaI	GGTCTC	1 cut(s)	1901
BsaJI	CCNNGG	2 cut(s)	465, 1891
BsaWI	WCCGGW	1 cut(s)	721
BsaXI	ACNNNNNCTCC	6 cut(s)	759, 789, 1433, 1463, 2015, 2045
Bsc4I	CCNNNNNNNGG	3 cut(s)	447, 901, 1042
Bse1I	ACTGG	3 cut(s)	933, 1087, 1598
Bse3DI	GCAATG	2 cut(s)	418, 819
BseAI	TCCGGA	1 cut(s)	721
BseDI	CCNNGG	2 cut(s)	465, 1891
BseGI	GGATG	7 cut(s)	730, 1120, 1602, 1681, 1971, 2254, 2301
BseLI	CCNNNNNNNGG	3 cut(s)	447, 901, 1042
BseMI	GCAATG	2 cut(s)	418, 819
BseMII	CTCAG	7 cut(s)	92, 563, 1197, 1281, 1401, 1433, 2347
BseNI	ACTGG	3 cut(s)	933, 1087, 1598
BseRI	GAGGAG	3 cut(s)	238, 899, 1712
BseXI	GCAGC	5 cut(s)	50, 490, 1466, 1889, 2373
BseYI	CCCAGC	1 cut(s)	1352
BsgI	GTGCAG	2 cut(s)	1293, 1723
Bsh1285I	CGRYCG	1 cut(s)	234
BshFI	GGCC	2 cut(s)	1351, 2085
BsiEI	CGRYCG	1 cut(s)	234
BsiHKAI	GWGCWC	1 cut(s)	957
BsiSI	CCGG	3 cut(s)	130, 722, 2246
BslFI	GGGAC	5 cut(s)	53, 184, 460, 607, 2228
BslI	CCNNNNNNNGG	3 cut(s)	447, 901, 1042
BsmAI	GTCTC	1 cut(s)	1901
BsmFI	GGGAC	5 cut(s)	53, 184, 460, 607, 2228
BsmI	GAATGC	1 cut(s)	1405
BsnI	GGCC	2 cut(s)	1351, 2085
Bso31I	GGTCTC	1 cut(s)	1901
Bsp119I	TTCGAA	1 cut(s)	1007
Bsp1286I	GDGCHC	3 cut(s)	957, 1389, 1891
Bsp13I	TCCGGA	1 cut(s)	721
Bsp1407I	TGTACA	1 cut(s)	1865
Bsp143I	GATC	4 cut(s)	179, 393, 2008, 2323
Bsp1720I	GCTNAGC	1 cut(s)	1206
Bsp19I	CCATGG	1 cut(s)	465
BspANI	GGCC	2 cut(s)	1351, 2085
BspCNI	CTCAG	7 cut(s)	91, 562, 1198, 1280, 1402, 1432, 2346
BspEI	TCCGGA	1 cut(s)	721
BspHI	TCATGA	2 cut(s)	205, 2163
BspLI	GGNNCC	1 cut(s)	1888
BspMAI	CTGCAG	1 cut(s)	1173
BspMI	ACCTGC	1 cut(s)	1201
BspPI	GGATC	1 cut(s)	388
BspT104I	TTCGAA	1 cut(s)	1007
BspTNI	GGTCTC	1 cut(s)	1901
BsrDI	GCAATG	2 cut(s)	418, 819
BsrGI	TGTACA	1 cut(s)	1865
BsrI	ACTGG	3 cut(s)	933, 1087, 1598
BssECI	CCNNGG	2 cut(s)	465, 1891
BssMI	GATC	4 cut(s)	179, 393, 2008, 2323
BssT1I	CCWWGG	2 cut(s)	465, 1891
Bst4CI	ACNGT	7 cut(s)	545, 689, 1465, 1760, 1784, 1865, 2161
Bst6I	CTCTTC	1 cut(s)	227
BstAUI	TGTACA	1 cut(s)	1865
BstBI	TTCGAA	1 cut(s)	1007
BstC8I	GCNNGC	5 cut(s)	378, 420, 711, 1203, 1511
BstDSI	CCRYGG	1 cut(s)	465
BstF5I	GGATG	7 cut(s)	730, 1120, 1602, 1681, 1971, 2254, 2301
BstKTI	GATC	4 cut(s)	182, 396, 2011, 2326
BstMAI	GTCTC	1 cut(s)	1901
BstMBI	GATC	4 cut(s)	179, 393, 2008, 2323
BstMCI	CGRYCG	1 cut(s)	234
BstNSI	RCATGY	3 cut(s)	1205, 1513, 2406
BstSCI	CCNGG	2 cut(s)	129, 2244
BstSFI	CTRYAG	4 cut(s)	1169, 1245, 1759, 1820
BstV1I	GCAGC	5 cut(s)	50, 490, 1466, 1889, 2373
BstV2I	GAAGAC	2 cut(s)	1794, 2115
BstX2I	RGATCY	1 cut(s)	179
BstYI	RGATCY	1 cut(s)	179
BsuI	GTATCC	1 cut(s)	145
BsuRI	GGCC	2 cut(s)	1351, 2085
BtgI	CCRYGG	1 cut(s)	465
BtrI	CACGTC	1 cut(s)	74
BtsCI	GGATG	7 cut(s)	730, 1120, 1602, 1681, 1971, 2254, 2301
BtsI	GCAGTG	1 cut(s)	2052
BtsIMutI	CAGTG	6 cut(s)	441, 1100, 1310, 1470, 2052, 2157
BveI	ACCTGC	1 cut(s)	1201
Cac8I	GCNNGC	5 cut(s)	378, 420, 711, 1203, 1511
CciI	TCATGA	2 cut(s)	205, 2163
Cfr13I	GGNCC	1 cut(s)	1350
CseI	GACGC	2 cut(s)	55, 1001
Csp6I	GTAC	9 cut(s)	166, 350, 546, 914, 1089, 1756, 1866, 1938, 2135
CviQI	GTAC	9 cut(s)	166, 350, 546, 914, 1089, 1756, 1866, 1938, 2135
DpnI	GATC	4 cut(s)	181, 395, 2010, 2325
DpnII	GATC	4 cut(s)	179, 393, 2008, 2323
Eam1104I	CTCTTC	1 cut(s)	227
EarI	CTCTTC	1 cut(s)	227
EciI	GGCGGA	1 cut(s)	75
Eco130I	CCWWGG	2 cut(s)	465, 1891
Eco24I	GRGCYC	2 cut(s)	1389, 1891
Eco31I	GGTCTC	1 cut(s)	1901
Eco57I	CTGAAG	3 cut(s)	497, 1124, 1330
EcoRI	GAATTC	2 cut(s)	209, 649
EcoT14I	CCWWGG	2 cut(s)	465, 1891
EcoT22I	ATGCAT	1 cut(s)	1650
EcoT38I	GRGCYC	2 cut(s)	1389, 1891
ErhI	CCWWGG	2 cut(s)	465, 1891
FalI	AAGNNNNNCTT	2 cut(s)	1538, 1570
FaqI	GGGAC	5 cut(s)	53, 184, 460, 607, 2228
FauI	CCCGC	1 cut(s)	444
FauNDI	CATATG	1 cut(s)	1735
FbaI	TGATCA	2 cut(s)	2008, 2323
FblI	GTMKAC	1 cut(s)	1248
FokI	GGATG	7 cut(s)	737, 1127, 1609, 1688, 1978, 2261, 2308
FriOI	GRGCYC	2 cut(s)	1389, 1891
FspBI	CTAG	6 cut(s)	656, 1092, 1296, 1524, 2081, 2345
GsaI	CCCAGC	1 cut(s)	1356
HaeIII	GGCC	2 cut(s)	1351, 2085
HapII	CCGG	3 cut(s)	130, 722, 2246
HgaI	GACGC	2 cut(s)	55, 1001
HincII	GTYRAC	1 cut(s)	259
HindII	GTYRAC	1 cut(s)	259
HindIII	AAGCTT	3 cut(s)	300, 420, 2307
HinfI	GANTC	4 cut(s)	532, 928, 1304, 1499
HpaII	CCGG	3 cut(s)	130, 722, 2246
HphI	GGTGA	4 cut(s)	310, 1753, 1796, 1819
Hpy166II	GTNNAC	6 cut(s)	259, 350, 730, 738, 1249, 1570
Hpy188I	TCNGA	2 cut(s)	939, 1411
Hpy188III	TCNNGA	6 cut(s)	25, 206, 628, 722, 2006, 2164
Hpy8I	GTNNAC	6 cut(s)	259, 350, 730, 738, 1249, 1570
Hpy99I	CGWCG	1 cut(s)	995
HpyAV	CCTTC	7 cut(s)	6, 766, 1003, 1568, 1912, 2012, 2014
HpyCH4III	ACNGT	7 cut(s)	545, 689, 1465, 1760, 1784, 1865, 2161
HpyCH4IV	ACGT	3 cut(s)	73, 1878, 2133
HpySE526I	ACGT	3 cut(s)	73, 1878, 2133
Kpn2I	TCCGGA	1 cut(s)	721
Ksp22I	TGATCA	2 cut(s)	2008, 2323
Kzo9I	GATC	4 cut(s)	179, 393, 2008, 2323
LmnI	GCTCC	4 cut(s)	4, 829, 960, 1886
Lsp1109I	GCAGC	5 cut(s)	50, 490, 1466, 1889, 2373
LweI	GCATC	7 cut(s)	205, 772, 1424, 1669, 1981, 2239, 2398
MaeI	CTAG	6 cut(s)	656, 1092, 1296, 1524, 2081, 2345
MaeII	ACGT	3 cut(s)	73, 1878, 2133
MaeIII	GTNAC	6 cut(s)	835, 1135, 1150, 1465, 1807, 2254
MalI	GATC	4 cut(s)	181, 395, 2010, 2325
MboI	GATC	4 cut(s)	179, 393, 2008, 2323
MboII	GAAGA	8 cut(s)	214, 888, 1799, 1941, 2000, 2115, 2210, 2315
MfeI	CAATTG	1 cut(s)	1323
MflI	RGATCY	1 cut(s)	179
MhlI	GDGCHC	3 cut(s)	957, 1389, 1891
MmeI	TCCRAC	2 cut(s)	501, 957
Mph1103I	ATGCAT	1 cut(s)	1650
MroI	TCCGGA	1 cut(s)	721
MroXI	GAANNNNTTC	3 cut(s)	16, 1405, 2001
MslI	CAYNNNNRTG	2 cut(s)	470, 2162
MspA1I	CMGCKG	1 cut(s)	1825
MspI	CCGG	3 cut(s)	130, 722, 2246
MspR9I	CCNGG	2 cut(s)	131, 2246
MunI	CAATTG	1 cut(s)	1323
Mva1269I	GAATGC	1 cut(s)	1405
NciI	CCSGG	2 cut(s)	131, 2246
NcoI	CCATGG	1 cut(s)	465
NdeI	CATATG	1 cut(s)	1735
NdeII	GATC	4 cut(s)	179, 393, 2008, 2323
NlaIV	GGNNCC	1 cut(s)	1888
NmuCI	GTSAC	3 cut(s)	1465, 1807, 2254
NsiI	ATGCAT	1 cut(s)	1650
NspI	RCATGY	3 cut(s)	1205, 1513, 2406
NspV	TTCGAA	1 cut(s)	1007
PaeI	GCATGC	2 cut(s)	1205, 1513
PagI	TCATGA	2 cut(s)	205, 2163
PciI	ACATGT	1 cut(s)	2402
PctI	GAATGC	1 cut(s)	1405
PdmI	GAANNNNTTC	3 cut(s)	16, 1405, 2001
PfeI	GAWTC	4 cut(s)	532, 928, 1304, 1499
PflFI	GACNNNGTC	1 cut(s)	1253
PfoI	TCCNGGA	1 cut(s)	2244
PscI	ACATGT	1 cut(s)	2402
PshBI	ATTAAT	1 cut(s)	2060
PsiI	TTATAA	2 cut(s)	1842, 1853
PspFI	CCCAGC	1 cut(s)	1352
PspN4I	GGNNCC	1 cut(s)	1888
PspPI	GGNCC	1 cut(s)	1350
PsrI	GAACNNNNNNTAC	4 cut(s)	126, 158, 2091, 2123
PstI	CTGCAG	1 cut(s)	1173
PsuI	RGATCY	1 cut(s)	179
PsyI	GACNNNGTC	1 cut(s)	1253
PvuII	CAGCTG	1 cut(s)	1825
RsaI	GTAC	9 cut(s)	167, 351, 547, 915, 1090, 1757, 1867, 1939, 2136
RsaNI	GTAC	9 cut(s)	166, 350, 546, 914, 1089, 1756, 1866, 1938, 2135
RseI	CAYNNNNRTG	2 cut(s)	470, 2162
Sau3AI	GATC	4 cut(s)	179, 393, 2008, 2323
Sau96I	GGNCC	1 cut(s)	1350
ScaI	AGTACT	1 cut(s)	1090
ScrFI	CCNGG	2 cut(s)	131, 2246
SduI	GDGCHC	3 cut(s)	957, 1389, 1891
SfaNI	GCATC	7 cut(s)	205, 772, 1424, 1669, 1981, 2239, 2398
SfcI	CTRYAG	4 cut(s)	1169, 1245, 1759, 1820
SfuI	TTCGAA	1 cut(s)	1007
SmiMI	CAYNNNNRTG	2 cut(s)	470, 2162
SmlI	CTYRAG	2 cut(s)	626, 1532
SmoI	CTYRAG	2 cut(s)	626, 1532
SpeI	ACTAGT	1 cut(s)	1091
SphI	GCATGC	2 cut(s)	1205, 1513
SspI	AATATT	1 cut(s)	1975
SspMI	CTAG	6 cut(s)	656, 1092, 1296, 1524, 2081, 2345
StyD4I	CCNGG	2 cut(s)	129, 2244
StyI	CCWWGG	2 cut(s)	465, 1891
TaaI	ACNGT	7 cut(s)	545, 689, 1465, 1760, 1784, 1865, 2161
TaiI	ACGT	3 cut(s)	76, 1881, 2136
TaqI	TCGA	4 cut(s)	26, 213, 1007, 1986
TaqII	GACCGA	1 cut(s)	220
TatI	WGTACW	4 cut(s)	349, 545, 1088, 1865
TauI	GCSGC	7 cut(s)	91, 94, 97, 100, 103, 106, 239
TfiI	GAWTC	4 cut(s)	532, 928, 1304, 1499
TscAI	CASTG	6 cut(s)	448, 1107, 1317, 1470, 2059, 2164
TseFI	GTSAC	3 cut(s)	1465, 1807, 2254
TseI	GCWGC	5 cut(s)	63, 503, 1454, 1902, 2386
Tsp45I	GTSAC	3 cut(s)	1465, 1807, 2254
TspGWI	ACGGA	2 cut(s)	266, 609
TspRI	CASTG	6 cut(s)	448, 1107, 1317, 1470, 2059, 2164
Tth111I	GACNNNGTC	1 cut(s)	1253
VspI	ATTAAT	1 cut(s)	2060
XapI	RAATTY	6 cut(s)	209, 649, 1144, 1316, 1611, 1828
XceI	RCATGY	3 cut(s)	1205, 1513, 2406
XmiI	GTMKAC	1 cut(s)	1248
XmnI	GAANNNNTTC	3 cut(s)	16, 1405, 2001
XspI	CTAG	6 cut(s)	656, 1092, 1296, 1524, 2081, 2345
ZrmI	AGTACT	1 cut(s)	1090
Zsp2I	ATGCAT	1 cut(s)	1650

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.