Rh4DG129200

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0003055
Physical Location & Seq
Reverse (-)
21464441 .. 21466900
2460 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG129200.1

Sequence Viewer

Length: 2460 bp
ATGGAGCTGAGAAGGGTTTCAATCTCGAAACCTTGCTCTTTCTTAATCAAACGCCCACTAAGCTGCGTCCCACGTCCTCAGCCTCCGCCGCCGCCGCCGAACAACCAGAGATTACTTGACCGGGTATCCTCTGTTCTCTCAAACTCATCTTTCAAGTACCCTCAATGTAGATCTCTCATATCCCTCTTGTCCCCTCATGAATTCGATGCCCTCTTCTATTCGGTCGCCGCTTCCCCCTCCTCCAATGTCAACCCCAAAACTGCTCTCCGTTTCTTTCACTTCGCTTCTAAAGCTTTCAACTTCCATTTCACCCTCGCCTCTTATTGCCTTTTGGTTCGTGTACTAATTCTTTCCAATCTTAACTCGCCTGCGAGATTGCTTTTGATCCGCTTGATTGATGGCAATGTGCAAGCTTTGTATGCCCTCCCGCCCACTGATAGGCACATTGAGATAGCCATGGCTATGTCCCACTTCAAAACCGCCTACGAAAGAGCTGCTGTGCTTCAGGCGTTGGATATGTTGATTCATCTTTACTGTACTCAGTTCAAGGATTTGGGTTTTTGTTCTGCCGTTCATGTTTTTGAGTTTTTCTCTAATAAGGCTATGTTTCCGTCCCTCAAGACTTGCCATTTTTTGTTGAATTCTCTAGTCAAGGCTGACCAACTTGATAAGAGCTACCGAGTGTTTGAAGTTCTGTTGCGTGCTGTTTCTCCGGATGTTTACTTGTTTACTACTGCAATTCAAGCATTTTGTAAGGGAGGGAAGGTTGATGATGCAATAGGTTTGTTCTCTAAAATGGAGGCACTTGGCATTGCTCCAAATGTTGTTACTTACAACAATGTTATTCACGGGTTATGTAAGAGCAGAAGATTAGAGGAGGCTTTCCAATTCAAGGACAAGATGGTACAAAACAATGTGAATCCCAGTCTGACAACCTATGGTGTGCTCCTTAATGGTTTGATTAAGTTGGACAAGTTTGACGACGCAAATCATGTTTTGAAGGAAATGTATAGTAAGGGATTTGCCCCCAATGAGGTTATCTATAACATATTGATTGACGGCTATTGTAAAACGGGAAGTACTAGTGAGGCACTGAAGTTAAGGGATGAAATGTTATCCAATGGGGTAACTCCAAATTCTGTTACCATTAACTCGCTACTGCAGGGATTTTGTAAAAGCAACCACTTTGAGCATGCTGAGCAGGTCTTAGATAAGGTGCTATCCAATGGTTCATCTGTAGACCAAGTCGTTTGTTTCTCAGTCATTCACTCGTTATGCAAGAACTCTAGGTTTGATTCTGCACTGAAATTCACAATTGAAATGCTATTAAGAAACTTCAGGCCCAGCGATAACTTGCTTACAACATTGGTTGTCGGGCTCTGTAAAGATGGAAAGCATTCTGAGGCATCTCAGCTTTGGTTTAGGCTATGGGAGAAAGGGTTTGCAGCCAACACAGTGACCTCAAATGCTCTAATTTATGGAGTTTGTGAATCTGGTAGCATGCAAGAGGTTGCTAGGCTACTCAAGGAAATGGTAAAGAGAGGCTTGGTATTGGATAGGATCTCATGCAACACACTCATCTTGGGTTGGTGCAAGGAGGGAAAAGTGGACGAAGGTTTTAAGATTAAGGACTGGATGGGTAAGAAAGGAATTTTGCCAGATGCATATACTTACAATTTGCTAATGCATGGTCTATGTAATATGGGAAAAGTGGATGATGCTGTTAAACTTTGGGAGGAGTGCAGAAAACATGGTCTTGCTGATGTCTATACATATGGGGTGATGATAGATGGGTACTGTAGAGCTGACAGAATTAAAGACGGTGAAGACCTATTTATTGAGTTGGTGACTAAGAAACTACAGCTGAATTTCATTGTTTATAATACGCTTATAAGAGCATACTGTACAAATGCGAACGTGATTGGAGCCCTTGGTCTCTGCTGCGACATGAAAAAGAAGGGTATTGAACCAACTTGTACCACATATTCTTCTCTTATACATGGGATGTGCAATATTGGTAATGTCGAAGATGCAGAATACCTTCTTGATCAAATGAGGAAGGAGGGCTTGTTGCCCGATGTTGTTTGCTACACTGCATTAATTCATGGTTATTGTAAGCTAGGCCAGATGGATAAAGTAGGGAGTGTTCTTGGAGAGATGTCTTCATATAACGTACAACCTAATAAGATTACATACACTGTCATGATTGATGGGCATTGTAAACTAGGTAATATGGAAGAAGCAACTAAACTTCTATGCGAGATGGAAAAAAAGGGAATTGTCCCGGATGCTGTCACTTACAATGCCTTAACAAATGGATTTTGCAAGGAAAGGATGGTGGAAGAAGCTTTTGAAGTTTGTGATCTAATGTTCAGTAAAGGTCTAGCTTTAGATGAAATTACCTATACGACATTGGTTAGTGGGCTGCATCAAACTGCTACATGTGCAGATGAGGAATGA

Protein Analysis

819

Amino Acids

91.6

Weight (kDa)

7.63

Isoelectric Point (pI)

30.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_long PF17177 179 - 318 1e-08 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 235 - 282 3.2e-07 Pentatricopeptide repeat domain
PPR_1 PF12854 236 - 267 3.5e-09 PPR repeat
PPR_2 PF13041 238 - 287 3.8e-15 PPR repeat family
PPR_1 PF12854 270 - 302 1e-11 PPR repeat
PPR_2 PF13041 273 - 322 2.2e-16 PPR repeat family
PPR PF01535 276 - 306 2.1e-06 PPR repeat
PPR_3 PF13812 298 - 355 2.8e-07 Pentatricopeptide repeat domain
TPR_24 PF23276 329 - 436 5.3e-09 Fungal tetratrico peptide repeats
PPR_3 PF13812 332 - 389 2.7e-07 Pentatricopeptide repeat domain
PPR_1 PF12854 339 - 371 4.8e-11 PPR repeat
PPR_2 PF13041 343 - 392 7.7e-18 PPR repeat family
PPR PF01535 346 - 376 8.2e-09 PPR repeat
PPR_1 PF12854 374 - 405 4.2e-06 PPR repeat
PPR_2 PF13041 484 - 527 2.2e-07 PPR repeat family
PPR_3 PF13812 506 - 563 9e-07 Pentatricopeptide repeat domain
PPR_2 PF13041 520 - 567 5.2e-16 PPR repeat family
PPR_1 PF12854 549 - 580 4.6e-11 PPR repeat
PPR PF01535 556 - 586 1.6e-06 PPR repeat
PPR_2 PF13041 557 - 601 1.1e-12 PPR repeat family
PPR_1 PF12854 587 - 614 5.1e-06 PPR repeat
PPR_long PF17177 611 - 728 1.1e-08 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 611 - 667 5.2e-09 Pentatricopeptide repeat domain
TPR_24 PF23276 617 - 712 2.1e-08 Fungal tetratrico peptide repeats
PPR_2 PF13041 625 - 671 6e-14 PPR repeat family
PPR_3 PF13812 649 - 704 5e-11 Pentatricopeptide repeat domain
PPR_1 PF12854 653 - 686 2.1e-11 PPR repeat
PPR PF01535 661 - 690 2.4e-06 PPR repeat
PPR_2 PF13041 661 - 706 1.7e-13 PPR repeat family
PPR_1 PF12854 689 - 712 6.5e-08 PPR repeat
PPR_2 PF13041 692 - 741 1.2e-17 PPR repeat family
PPR PF01535 695 - 724 2.1e-06 PPR repeat
PPR_long PF17177 712 - 806 1.4e-09 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 715 - 772 1.4e-09 Pentatricopeptide repeat domain
PPR_1 PF12854 724 - 756 7.6e-11 PPR repeat
PPR PF01535 730 - 760 5.1e-10 PPR repeat
PPR_2 PF13041 735 - 776 8.8e-15 PPR repeat family
PPR_1 PF12854 758 - 790 1.5e-10 PPR repeat
PPR_2 PF13041 762 - 810 3.5e-13 PPR repeat family
PPR PF01535 765 - 795 8.5e-07 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1881, 1892
Acc36I ACCTGC 1 cut(s) 1192
AccI GTMKAC 1 cut(s) 1239
AccIII TCCGGA 1 cut(s) 712
AciI CCGC 8 cut(s) 86, 89, 92, 95, 228, 388, 428, 480
AclWI GGATC 2 cut(s) 379, 1568
AcsI RAATTY 6 cut(s) 200, 640, 1135, 1307, 1650, 1867
AcuI CTGAAG 3 cut(s) 488, 1115, 1321
AfaI GTAC 9 cut(s) 158, 342, 538, 906, 1081, 1796, 1906, 1978, 2175
AfiI CCNNNNNNNGG 3 cut(s) 438, 892, 1033
AflIII ACRYGT 1 cut(s) 2441
AhlI ACTAGT 1 cut(s) 1082
AjiI CACGTC 1 cut(s) 74
Alw21I GWGCWC 1 cut(s) 948
Alw26I GTCTC 1 cut(s) 1940
AlwI GGATC 2 cut(s) 379, 1568
Aor13HI TCCGGA 1 cut(s) 712
AoxI GGCC 2 cut(s) 1340, 2122
ApeKI GCWGC 5 cut(s) 63, 494, 1445, 1941, 2425
ApoI RAATTY 6 cut(s) 200, 640, 1135, 1307, 1650, 1867
AseI ATTAAT 1 cut(s) 2099
Asp700I GAANNNNTTC 3 cut(s) 16, 1396, 2040
AspS9I GGNCC 1 cut(s) 1341
AsuC2I CCSGG 2 cut(s) 122, 2285
AsuHPI GGTGA 4 cut(s) 301, 1792, 1835, 1858
BanII GRGCYC 2 cut(s) 1380, 1930
BbsI GAAGAC 2 cut(s) 1833, 2154
Bbv12I GWGCWC 1 cut(s) 948
BbvCI CCTCAGC 1 cut(s) 78
BbvI GCAGC 5 cut(s) 50, 481, 1457, 1928, 2412
BccI CCATC 9 cut(s) 392, 895, 1382, 1630, 1784, 2122, 2204, 2257, 2329
BceAI ACGGC 2 cut(s) 554, 1075
BcgI CGANNNNNNTGC 2 cut(s) 476, 510
BciVI GTATCC 1 cut(s) 136
BclI TGATCA 1 cut(s) 2047
BcnI CCSGG 2 cut(s) 122, 2285
BcoDI GTCTC 1 cut(s) 1940
BcuI ACTAGT 1 cut(s) 1082
BfaI CTAG 7 cut(s) 647, 1083, 1287, 1515, 2120, 2225, 2384
BfmI CTRYAG 4 cut(s) 1160, 1236, 1798, 1859
BfuAI ACCTGC 1 cut(s) 1192
BfuI GTATCC 1 cut(s) 136
BglII AGATCT 1 cut(s) 170
BisI GCNGC 9 cut(s) 64, 89, 92, 95, 228, 495, 1446, 1942, 2426
BlpI GCTNAGC 1 cut(s) 1197
BlsI GCNGC 9 cut(s) 65, 90, 93, 96, 229, 496, 1447, 1943, 2427
BmcAI AGTACT 1 cut(s) 1081
Bme1390I CCNGG 2 cut(s) 122, 2285
BmgBI CACGTC 1 cut(s) 74
BmgT120I GGNCC 1 cut(s) 1341
BmiI GGNNCC 1 cut(s) 1927
BmrFI CCNGG 2 cut(s) 122, 2285
BmrI ACTGGG 1 cut(s) 918
BmsI GCATC 8 cut(s) 196, 763, 1415, 1651, 1708, 2020, 2278, 2437
BmuI ACTGGG 1 cut(s) 918
BpiI GAAGAC 2 cut(s) 1833, 2154
BplI GAGNNNNNCTC 2 cut(s) 575, 607
Bpu10I CCTNAGC 1 cut(s) 78
Bpu1102I GCTNAGC 1 cut(s) 1197
BpuEI CTTGAG 2 cut(s) 602, 1508
BpuMI CCSGG 2 cut(s) 122, 2285
BsaI GGTCTC 1 cut(s) 1940
BsaJI CCNNGG 2 cut(s) 456, 1930
BsaWI WCCGGW 1 cut(s) 712
BsaXI ACNNNNNCTCC 6 cut(s) 750, 780, 1424, 1454, 2054, 2084
Bsc4I CCNNNNNNNGG 3 cut(s) 438, 892, 1033
Bse1I ACTGG 2 cut(s) 924, 1637
Bse3DI GCAATG 2 cut(s) 409, 810
BseAI TCCGGA 1 cut(s) 712
BseDI CCNNGG 2 cut(s) 456, 1930
BseGI GGATG 7 cut(s) 721, 1111, 1641, 1720, 2010, 2293, 2340
BseLI CCNNNNNNNGG 3 cut(s) 438, 892, 1033
BseMI GCAATG 2 cut(s) 409, 810
BseMII CTCAG 6 cut(s) 92, 554, 1188, 1272, 1392, 1424
BseNI ACTGG 2 cut(s) 924, 1637
BseRI GAGGAG 3 cut(s) 229, 890, 1751
BseXI GCAGC 5 cut(s) 50, 481, 1457, 1928, 2412
BseYI CCCAGC 1 cut(s) 1343
BsgI GTGCAG 2 cut(s) 1284, 1762
Bsh1285I CGRYCG 1 cut(s) 225
BshFI GGCC 2 cut(s) 1342, 2124
BsiEI CGRYCG 1 cut(s) 225
BsiHKAI GWGCWC 1 cut(s) 948
BsiSI CCGG 3 cut(s) 121, 713, 2285
BslFI GGGAC 5 cut(s) 53, 175, 451, 598, 2267
BslI CCNNNNNNNGG 3 cut(s) 438, 892, 1033
BsmAI GTCTC 1 cut(s) 1940
BsmFI GGGAC 5 cut(s) 53, 175, 451, 598, 2267
BsmI GAATGC 1 cut(s) 1396
BsnI GGCC 2 cut(s) 1342, 2124
Bso31I GGTCTC 1 cut(s) 1940
Bsp1286I GDGCHC 3 cut(s) 948, 1380, 1930
Bsp13I TCCGGA 1 cut(s) 712
Bsp1407I TGTACA 1 cut(s) 1904
Bsp143I GATC 5 cut(s) 170, 384, 1560, 2047, 2362
Bsp1720I GCTNAGC 1 cut(s) 1197
Bsp19I CCATGG 1 cut(s) 456
BspACI CCGC 8 cut(s) 86, 89, 92, 95, 228, 388, 428, 480
BspANI GGCC 2 cut(s) 1342, 2124
BspCNI CTCAG 6 cut(s) 91, 553, 1189, 1271, 1393, 1423
BspEI TCCGGA 1 cut(s) 712
BspHI TCATGA 2 cut(s) 196, 2202
BspLI GGNNCC 1 cut(s) 1927
BspMAI CTGCAG 1 cut(s) 1164
BspMI ACCTGC 1 cut(s) 1192
BspPI GGATC 2 cut(s) 379, 1568
BspTNI GGTCTC 1 cut(s) 1940
BsrDI GCAATG 2 cut(s) 409, 810
BsrGI TGTACA 1 cut(s) 1904
BsrI ACTGG 2 cut(s) 924, 1637
BssECI CCNNGG 2 cut(s) 456, 1930
BssMI GATC 5 cut(s) 170, 384, 1560, 2047, 2362
BssT1I CCWWGG 2 cut(s) 456, 1930
Bst4CI ACNGT 6 cut(s) 536, 1456, 1799, 1823, 1904, 2200
Bst6I CTCTTC 1 cut(s) 218
BstAUI TGTACA 1 cut(s) 1904
BstC8I GCNNGC 5 cut(s) 369, 411, 702, 1194, 1502
BstDSI CCRYGG 1 cut(s) 456
BstF5I GGATG 7 cut(s) 721, 1111, 1641, 1720, 2010, 2293, 2340
BstKTI GATC 5 cut(s) 173, 387, 1563, 2050, 2365
BstMAI GTCTC 1 cut(s) 1940
BstMBI GATC 5 cut(s) 170, 384, 1560, 2047, 2362
BstMCI CGRYCG 1 cut(s) 225
BstMWI GCNNNNNNNGC 8 cut(s) 60, 88, 94, 290, 419, 743, 1198, 2444
BstNSI RCATGY 3 cut(s) 1196, 1504, 2445
BstSCI CCNGG 2 cut(s) 120, 2283
BstSFI CTRYAG 4 cut(s) 1160, 1236, 1798, 1859
BstV1I GCAGC 5 cut(s) 50, 481, 1457, 1928, 2412
BstV2I GAAGAC 2 cut(s) 1833, 2154
BstX2I RGATCY 2 cut(s) 170, 1560
BstYI RGATCY 2 cut(s) 170, 1560
BsuI GTATCC 1 cut(s) 136
BsuRI GGCC 2 cut(s) 1342, 2124
BtgI CCRYGG 1 cut(s) 456
BtrI CACGTC 1 cut(s) 74
BtsCI GGATG 7 cut(s) 721, 1111, 1641, 1720, 2010, 2293, 2340
BtsI GCAGTG 1 cut(s) 2091
BtsIMutI CAGTG 6 cut(s) 432, 1091, 1301, 1461, 2091, 2196
BveI ACCTGC 1 cut(s) 1192
Cac8I GCNNGC 5 cut(s) 369, 411, 702, 1194, 1502
CciI TCATGA 2 cut(s) 196, 2202
Cfr13I GGNCC 1 cut(s) 1341
CseI GACGC 2 cut(s) 55, 992
Csp6I GTAC 9 cut(s) 157, 341, 537, 905, 1080, 1795, 1905, 1977, 2174
CviQI GTAC 9 cut(s) 157, 341, 537, 905, 1080, 1795, 1905, 1977, 2174
DpnI GATC 5 cut(s) 172, 386, 1562, 2049, 2364
DpnII GATC 5 cut(s) 170, 384, 1560, 2047, 2362
Eam1104I CTCTTC 1 cut(s) 218
EarI CTCTTC 1 cut(s) 218
EciI GGCGGA 1 cut(s) 75
Eco130I CCWWGG 2 cut(s) 456, 1930
Eco24I GRGCYC 2 cut(s) 1380, 1930
Eco31I GGTCTC 1 cut(s) 1940
Eco57I CTGAAG 3 cut(s) 488, 1115, 1321
EcoRI GAATTC 2 cut(s) 200, 640
EcoT14I CCWWGG 2 cut(s) 456, 1930
EcoT22I ATGCAT 2 cut(s) 1666, 1689
EcoT38I GRGCYC 2 cut(s) 1380, 1930
ErhI CCWWGG 2 cut(s) 456, 1930
FalI AAGNNNNNCTT 4 cut(s) 1529, 1561, 2051, 2083
FaqI GGGAC 5 cut(s) 53, 175, 451, 598, 2267
FauI CCCGC 1 cut(s) 435
FauNDI CATATG 1 cut(s) 1774
FbaI TGATCA 1 cut(s) 2047
FblI GTMKAC 1 cut(s) 1239
Fnu4HI GCNGC 9 cut(s) 64, 89, 92, 95, 228, 495, 1446, 1942, 2426
FokI GGATG 7 cut(s) 728, 1118, 1648, 1727, 2017, 2300, 2347
FriOI GRGCYC 2 cut(s) 1380, 1930
Fsp4HI GCNGC 9 cut(s) 64, 89, 92, 95, 228, 495, 1446, 1942, 2426
FspBI CTAG 7 cut(s) 647, 1083, 1287, 1515, 2120, 2225, 2384
GluI GCNGC 9 cut(s) 64, 89, 92, 95, 228, 495, 1446, 1942, 2426
GsaI CCCAGC 1 cut(s) 1347
HaeIII GGCC 2 cut(s) 1342, 2124
HapII CCGG 3 cut(s) 121, 713, 2285
HgaI GACGC 2 cut(s) 55, 992
HincII GTYRAC 1 cut(s) 250
HindII GTYRAC 1 cut(s) 250
HindIII AAGCTT 3 cut(s) 291, 411, 2346
HinfI GANTC 4 cut(s) 523, 919, 1295, 1490
HpaII CCGG 3 cut(s) 121, 713, 2285
HphI GGTGA 4 cut(s) 301, 1792, 1835, 1858
Hpy166II GTNNAC 7 cut(s) 250, 341, 721, 729, 1240, 1609, 2222
Hpy188I TCNGA 2 cut(s) 930, 1402
Hpy188III TCNNGA 6 cut(s) 25, 197, 619, 713, 2045, 2203
Hpy8I GTNNAC 7 cut(s) 250, 341, 721, 729, 1240, 1609, 2222
Hpy99I CGWCG 1 cut(s) 986
HpyAV CCTTC 7 cut(s) 6, 757, 994, 1607, 1951, 2051, 2053
HpyCH4III ACNGT 6 cut(s) 536, 1456, 1799, 1823, 1904, 2200
HpyCH4IV ACGT 3 cut(s) 73, 1917, 2172
HpyF10VI GCNNNNNNNGC 8 cut(s) 60, 88, 94, 290, 419, 743, 1198, 2444
HpySE526I ACGT 3 cut(s) 73, 1917, 2172
Kpn2I TCCGGA 1 cut(s) 712
Ksp22I TGATCA 1 cut(s) 2047
Kzo9I GATC 5 cut(s) 170, 384, 1560, 2047, 2362
LmnI GCTCC 4 cut(s) 4, 820, 951, 1925
Lsp1109I GCAGC 5 cut(s) 50, 481, 1457, 1928, 2412
LweI GCATC 8 cut(s) 196, 763, 1415, 1651, 1708, 2020, 2278, 2437
MaeI CTAG 7 cut(s) 647, 1083, 1287, 1515, 2120, 2225, 2384
MaeII ACGT 3 cut(s) 73, 1917, 2172
MaeIII GTNAC 6 cut(s) 826, 1126, 1141, 1456, 1846, 2293
MalI GATC 5 cut(s) 172, 386, 1562, 2049, 2364
MboI GATC 5 cut(s) 170, 384, 1560, 2047, 2362
MboII GAAGA 8 cut(s) 205, 879, 1838, 1980, 2039, 2154, 2249, 2354
MfeI CAATTG 1 cut(s) 1314
MflI RGATCY 2 cut(s) 170, 1560
MhlI GDGCHC 3 cut(s) 948, 1380, 1930
MmeI TCCRAC 2 cut(s) 492, 948
Mph1103I ATGCAT 2 cut(s) 1666, 1689
MroI TCCGGA 1 cut(s) 712
MroXI GAANNNNTTC 3 cut(s) 16, 1396, 2040
MslI CAYNNNNRTG 2 cut(s) 461, 2201
MspA1I CMGCKG 1 cut(s) 1864
MspI CCGG 3 cut(s) 121, 713, 2285
MspR9I CCNGG 2 cut(s) 122, 2285
MunI CAATTG 1 cut(s) 1314
Mva1269I GAATGC 1 cut(s) 1396
MwoI GCNNNNNNNGC 8 cut(s) 60, 88, 94, 290, 419, 743, 1198, 2444
NciI CCSGG 2 cut(s) 122, 2285
NcoI CCATGG 1 cut(s) 456
NdeI CATATG 1 cut(s) 1774
NdeII GATC 5 cut(s) 170, 384, 1560, 2047, 2362
NlaIV GGNNCC 1 cut(s) 1927
NmuCI GTSAC 3 cut(s) 1456, 1846, 2293
NsiI ATGCAT 2 cut(s) 1666, 1689
NspI RCATGY 3 cut(s) 1196, 1504, 2445
PaeI GCATGC 2 cut(s) 1196, 1504
PagI TCATGA 2 cut(s) 196, 2202
PciI ACATGT 1 cut(s) 2441
PctI GAATGC 1 cut(s) 1396
PdmI GAANNNNTTC 3 cut(s) 16, 1396, 2040
PfeI GAWTC 4 cut(s) 523, 919, 1295, 1490
PflFI GACNNNGTC 1 cut(s) 1244
PfoI TCCNGGA 1 cut(s) 2283
PkrI GCNGC 9 cut(s) 65, 90, 93, 96, 229, 496, 1447, 1943, 2427
PscI ACATGT 1 cut(s) 2441
PshBI ATTAAT 1 cut(s) 2099
PsiI TTATAA 2 cut(s) 1881, 1892
PspFI CCCAGC 1 cut(s) 1343
PspN4I GGNNCC 1 cut(s) 1927
PspPI GGNCC 1 cut(s) 1341
PsrI GAACNNNNNNTAC 4 cut(s) 117, 149, 2130, 2162
PstI CTGCAG 1 cut(s) 1164
PsuI RGATCY 2 cut(s) 170, 1560
PsyI GACNNNGTC 1 cut(s) 1244
PvuII CAGCTG 1 cut(s) 1864
RsaI GTAC 9 cut(s) 158, 342, 538, 906, 1081, 1796, 1906, 1978, 2175
RsaNI GTAC 9 cut(s) 157, 341, 537, 905, 1080, 1795, 1905, 1977, 2174
RseI CAYNNNNRTG 2 cut(s) 461, 2201
SatI GCNGC 9 cut(s) 64, 89, 92, 95, 228, 495, 1446, 1942, 2426
Sau3AI GATC 5 cut(s) 170, 384, 1560, 2047, 2362
Sau96I GGNCC 1 cut(s) 1341
ScaI AGTACT 1 cut(s) 1081
ScrFI CCNGG 2 cut(s) 122, 2285
SduI GDGCHC 3 cut(s) 948, 1380, 1930
SfaNI GCATC 8 cut(s) 196, 763, 1415, 1651, 1708, 2020, 2278, 2437
SfcI CTRYAG 4 cut(s) 1160, 1236, 1798, 1859
SmiMI CAYNNNNRTG 2 cut(s) 461, 2201
SmlI CTYRAG 2 cut(s) 617, 1523
SmoI CTYRAG 2 cut(s) 617, 1523
SpeI ACTAGT 1 cut(s) 1082
SphI GCATGC 2 cut(s) 1196, 1504
SsiI CCGC 8 cut(s) 86, 89, 92, 95, 228, 388, 428, 480
SspI AATATT 1 cut(s) 2014
SspMI CTAG 7 cut(s) 647, 1083, 1287, 1515, 2120, 2225, 2384
StyD4I CCNGG 2 cut(s) 120, 2283
StyI CCWWGG 2 cut(s) 456, 1930
TaaI ACNGT 6 cut(s) 536, 1456, 1799, 1823, 1904, 2200
TaiI ACGT 3 cut(s) 76, 1920, 2175
TaqI TCGA 3 cut(s) 26, 204, 2025
TaqII GACCGA 1 cut(s) 211
TatI WGTACW 4 cut(s) 340, 536, 1079, 1904
TauI GCSGC 4 cut(s) 91, 94, 97, 230
TfiI GAWTC 4 cut(s) 523, 919, 1295, 1490
TscAI CASTG 6 cut(s) 439, 1098, 1308, 1461, 2098, 2203
TseFI GTSAC 3 cut(s) 1456, 1846, 2293
TseI GCWGC 5 cut(s) 63, 494, 1445, 1941, 2425
Tsp45I GTSAC 3 cut(s) 1456, 1846, 2293
TspGWI ACGGA 2 cut(s) 257, 600
TspRI CASTG 6 cut(s) 439, 1098, 1308, 1461, 2098, 2203
Tth111I GACNNNGTC 1 cut(s) 1244
VspI ATTAAT 1 cut(s) 2099
XapI RAATTY 6 cut(s) 200, 640, 1135, 1307, 1650, 1867
XceI RCATGY 3 cut(s) 1196, 1504, 2445
XmiI GTMKAC 1 cut(s) 1239
XmnI GAANNNNTTC 3 cut(s) 16, 1396, 2040
XspI CTAG 7 cut(s) 647, 1083, 1287, 1515, 2120, 2225, 2384
ZrmI AGTACT 1 cut(s) 1081
Zsp2I ATGCAT 2 cut(s) 1666, 1689
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.