Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0019702.1

Orthogroup ID

OG0003055

Physical Location & Seq

Genomic Coordinates Reverse (-)

18332 .. 19545

Gene Structure 1214 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0019702.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

atggttatgattttcatcccgcagcaaagcgcgggcactgttgctagccacagcctcccaatccgggtttgctcaactgggtccaatgtgaaccccaaaacagctcttcatttctttcattttgcttctcaatcttttaagtttcagtttaccgttcgatctttctgtgttttggttcatttgctcattgcttcaaatcttgggcctcctgcgaggttgcttttgattcgtttgattgatgggaatgtcccagttttgtgtgctaaccccaatagcaagcatattgagatggccgtcgcaatgtcggagttgaacaatgcgtcccaaccgtctctggggattcaggcattggatatgttaattcatgtttactgtacccagttcaagaatttgggttttggttatgctgttaatgtgtttgagcatttttcagataagggtgtgtttccgtctttgaagacttgtaatgttttgctgagttctttagtgaaggctaacgaacttgagaagagctatcatgtatttgaagttatgactcgaggtgtttgtcttgatgttttcttgtttactactgcaattaatgcattttgcaagggagggaaggtggatgatgctatagctgtgttctcaaaaatggagagcattggtattggtccgaatgttgttacttacaatagcattatccacgggctatgtaagagtagaagattagaggaagctttccagtttaaggagaagatggtaaagaataatgtgaagccgagtcttataacatacagtgtgctcattaatggtttgattaagctggagaagttttatgaggcaaattgtgttttcaaggaaatgcgtagttgggggtttgtcccgaatgaggttgcatataacactttgattaatgggtattgtacaatgggaaatattggtgaggcactcaagataagggatgatatggtatcgaatggggttacccctaattctgttactctgaattcgctactgcacggattttgtataagtaatcaatttgagcatgctgagcaatttttggacaagatgctagccagtggtttaccagtcaaccaagttgtttcttactcagtcattgactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

369

Amino Acids

40.77

Weight (kDa)

8.23

Isoelectric Point (pI)

26.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003055)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19440 AT4G19440 AT4G19440 AT4G19440
fragaria_vesca	FvH4_4g10410 FvH4_4g10410 FvH4_4g10440 FvH4_5g24430 FvH4_5g24430 FvH4_5g24430 FvH4_5g24430
malus_domestica	MD06G1022200.v1.1
prunus_persica	Prupe.3G018200_v2.0.a1
pyrus_communis	pycom06g01610
rosa_chinensis	RchiOBHm_Chr4g0405931 RchiOBHm_Chr7g0214821 RchiOBHm_Chr7g0219861
rosa_laevigata	RLG00000002716 RLG00000008810
rosa_multiflora	Rmu_sc0002308.1_g000021 Rmu_sc0019702.1_g000004 Rmu_ssc0000087.1_g000071
rosa_roxburghii	Rroxscaffold_3G00244980 Rroxscaffold_5G00350670
rosa_rugosa	Rorug04G0064100 Rorug07G0147600 Rorug07G0147700 Rorug07G0147800
rosa_samantha	Rh4AG134900 Rh4BG130500 Rh4CG142300 Rh4DG129200 Rh7AG284500 Rh7BG275300 Rh7CG303700 Rh7DG287900
rosa_wichuraiana	Rw4G010980 Rw7G024260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	770
AccII	CGCG	1 cut(s)	32
AciI	CCGC	2 cut(s)	20, 32
AcoI	YGGCCR	1 cut(s)	291
AcsI	RAATTY	2 cut(s)	388, 988
AfaI	GTAC	2 cut(s)	376, 907
AfiI	CCNNNNNNNGG	4 cut(s)	64, 335, 730, 871
AgsI	TTSAA	6 cut(s)	195, 313, 385, 457, 527, 838
AloI	GAACNNNNNNTCC	2 cut(s)	305, 337
AluBI	AGCT	5 cut(s)	104, 513, 620, 719, 805
AluI	AGCT	5 cut(s)	104, 513, 620, 719, 805
Alw21I	GWGCWC	1 cut(s)	786
Alw26I	GTCTC	1 cut(s)	336
Ama87I	CYCGRG	1 cut(s)	537
AoxI	GGCC	2 cut(s)	203, 291
ApeKI	GCWGC	1 cut(s)	22
ApoI	RAATTY	2 cut(s)	388, 988
AseI	ATTAAT	3 cut(s)	579, 789, 894
AspLEI	GCGC	1 cut(s)	32
AspS9I	GGNCC	3 cut(s)	81, 203, 653
AsuC2I	CCSGG	1 cut(s)	65
AsuHPI	GGTGA	1 cut(s)	935
AsuNHI	GCTAGC	2 cut(s)	44, 1057
AvaI	CYCGRG	1 cut(s)	537
AvaII	GGWCC	2 cut(s)	81, 653
BaeGI	GKGCMC	1 cut(s)	38
BbsI	GAAGAC	1 cut(s)	464
Bbv12I	GWGCWC	1 cut(s)	786
BbvI	GCAGC	1 cut(s)	34
BccI	CCATC	3 cut(s)	233, 283, 733
BceAI	ACGGC	1 cut(s)	278
BcnI	CCSGG	1 cut(s)	65
BcoDI	GTCTC	1 cut(s)	336
BfaI	CTAG	3 cut(s)	45, 1058, 1108
BfmI	CTRYAG	1 cut(s)	615
BisI	GCNGC	1 cut(s)	23
BlpI	GCTNAGC	1 cut(s)	1035
BlsI	GCNGC	1 cut(s)	24
Bme1390I	CCNGG	1 cut(s)	65
Bme18I	GGWCC	2 cut(s)	81, 653
BmeT110I	CYCGRG	1 cut(s)	537
BmgT120I	GGNCC	3 cut(s)	81, 203, 653
BmiI	GGNNCC	1 cut(s)	82
BmrFI	CCNGG	1 cut(s)	65
BmrI	ACTGGG	3 cut(s)	87, 245, 373
BmsI	GCATC	2 cut(s)	601, 1044
BmtI	GCTAGC	2 cut(s)	48, 1061
BmuI	ACTGGG	3 cut(s)	87, 245, 373
BpiI	GAAGAC	1 cut(s)	464
BpmI	CTGGAG	1 cut(s)	827
Bpu1102I	GCTNAGC	1 cut(s)	1035
BpuEI	CTTGAG	2 cut(s)	524, 917
BpuMI	CCSGG	1 cut(s)	65
BsaBI	GATNNNNATC	1 cut(s)	14
BsaJI	CCNNGG	1 cut(s)	685
BsaXI	ACNNNNNCTCC	2 cut(s)	588, 618
Bsc4I	CCNNNNNNNGG	4 cut(s)	64, 335, 730, 871
Bse1I	ACTGG	6 cut(s)	82, 251, 379, 724, 1062, 1073
Bse3DI	GCAATG	2 cut(s)	186, 306
Bse8I	GATNNNNATC	1 cut(s)	14
BseDI	CCNNGG	1 cut(s)	685
BseGI	GGATG	3 cut(s)	15, 613, 949
BseJI	GATNNNNATC	1 cut(s)	14
BseLI	CCNNNNNNNGG	4 cut(s)	64, 335, 730, 871
BseMI	GCAATG	2 cut(s)	186, 306
BseMII	CTCAG	3 cut(s)	467, 1026, 1110
BseNI	ACTGG	6 cut(s)	82, 251, 379, 724, 1062, 1073
BseSI	GKGCMC	1 cut(s)	38
BseXI	GCAGC	1 cut(s)	34
BsgI	GTGCAG	1 cut(s)	983
Bsh1236I	CGCG	1 cut(s)	32
BshFI	GGCC	2 cut(s)	205, 293
BsiHKAI	GWGCWC	1 cut(s)	786
BsiHKCI	CYCGRG	1 cut(s)	537
BsiSI	CCGG	1 cut(s)	64
BslFI	GGGAC	3 cut(s)	233, 307, 848
BslI	CCNNNNNNNGG	4 cut(s)	64, 335, 730, 871
BsmAI	GTCTC	1 cut(s)	336
BsmBI	CGTCTC	1 cut(s)	336
BsmFI	GGGAC	3 cut(s)	233, 307, 848
BsnI	GGCC	2 cut(s)	205, 293
BsoBI	CYCGRG	1 cut(s)	537
Bsp1286I	GDGCHC	2 cut(s)	38, 786
Bsp1407I	TGTACA	1 cut(s)	905
Bsp143I	GATC	1 cut(s)	158
Bsp1720I	GCTNAGC	1 cut(s)	1035
BspACI	CCGC	2 cut(s)	20, 32
BspANI	GGCC	2 cut(s)	205, 293
BspCNI	CTCAG	3 cut(s)	468, 1027, 1109
BspFNI	CGCG	1 cut(s)	32
BspLI	GGNNCC	1 cut(s)	82
BspOI	GCTAGC	2 cut(s)	48, 1061
BspQI	GCTCTTC	2 cut(s)	111, 503
BsrDI	GCAATG	2 cut(s)	186, 306
BsrGI	TGTACA	1 cut(s)	905
BsrI	ACTGG	6 cut(s)	82, 251, 379, 724, 1062, 1073
BssECI	CCNNGG	1 cut(s)	685
BssMI	GATC	1 cut(s)	158
Bst4CI	ACNGT	5 cut(s)	40, 154, 330, 374, 779
Bst6I	CTCTTC	2 cut(s)	111, 503
BstAPI	GCANNNNNTGC	1 cut(s)	581
BstAUI	TGTACA	1 cut(s)	905
BstC8I	GCNNGC	5 cut(s)	34, 46, 278, 1032, 1059
BstDEI	CTNAG	3 cut(s)	476, 1035, 1096
BstDSI	CCRYGG	1 cut(s)	685
BstEII	GGTNACC	1 cut(s)	964
BstF5I	GGATG	3 cut(s)	15, 613, 949
BstFNI	CGCG	1 cut(s)	32
BstHHI	GCGC	1 cut(s)	32
BstKTI	GATC	1 cut(s)	161
BstMAI	GTCTC	1 cut(s)	336
BstMBI	GATC	1 cut(s)	158
BstMWI	GCNNNNNNNGC	2 cut(s)	581, 1036
BstNSI	RCATGY	1 cut(s)	1034
BstPI	GGTNACC	1 cut(s)	964
BstSCI	CCNGG	1 cut(s)	63
BstSFI	CTRYAG	1 cut(s)	615
BstSLI	GKGCMC	1 cut(s)	38
BstUI	CGCG	1 cut(s)	32
BstV1I	GCAGC	1 cut(s)	34
BstV2I	GAAGAC	1 cut(s)	464
BsuRI	GGCC	2 cut(s)	205, 293
BtgI	CCRYGG	1 cut(s)	685
BtsCI	GGATG	3 cut(s)	15, 613, 949
BtsIMutI	CAGTG	3 cut(s)	36, 784, 1069
Cac8I	GCNNGC	5 cut(s)	34, 46, 278, 1032, 1059
CfoI	GCGC	1 cut(s)	32
Cfr13I	GGNCC	3 cut(s)	81, 203, 653
CseI	GACGC	1 cut(s)	309
Csp6I	GTAC	2 cut(s)	375, 906
CviAII	CATG	3 cut(s)	365, 518, 1031
CviQI	GTAC	2 cut(s)	375, 906
DdeI	CTNAG	3 cut(s)	476, 1035, 1096
DpnI	GATC	1 cut(s)	160
DpnII	GATC	1 cut(s)	158
EaeI	YGGCCR	1 cut(s)	291
Eam1104I	CTCTTC	2 cut(s)	111, 503
EarI	CTCTTC	2 cut(s)	111, 503
Eco47I	GGWCC	2 cut(s)	81, 653
Eco88I	CYCGRG	1 cut(s)	537
Eco91I	GGTNACC	1 cut(s)	964
EcoO65I	GGTNACC	1 cut(s)	964
EcoRI	GAATTC	1 cut(s)	988
EcoT22I	ATGCAT	1 cut(s)	586
Esp3I	CGTCTC	1 cut(s)	336
FaeI	CATG	3 cut(s)	368, 521, 1034
FaqI	GGGAC	3 cut(s)	233, 307, 848
FatI	CATG	3 cut(s)	364, 517, 1030
FauI	CCCGC	2 cut(s)	25, 27
Fnu4HI	GCNGC	1 cut(s)	23
FokI	GGATG	3 cut(s)	2, 620, 956
Fsp4HI	GCNGC	1 cut(s)	23
FspBI	CTAG	3 cut(s)	45, 1058, 1108
GlaI	GCGC	1 cut(s)	31
GluI	GCNGC	1 cut(s)	23
GsuI	CTGGAG	1 cut(s)	827
HaeIII	GGCC	2 cut(s)	205, 293
HapII	CCGG	1 cut(s)	64
HgaI	GACGC	1 cut(s)	309
HhaI	GCGC	1 cut(s)	32
Hin1II	CATG	3 cut(s)	368, 521, 1034
Hin6I	GCGC	1 cut(s)	30
HinP1I	GCGC	1 cut(s)	30
HincII	GTYRAC	1 cut(s)	1078
HindII	GTYRAC	1 cut(s)	1078
HindIII	AAGCTT	1 cut(s)	717
HinfI	GANTC	4 cut(s)	226, 340, 535, 763
HpaII	CCGG	1 cut(s)	64
HphI	GGTGA	1 cut(s)	935
Hpy166II	GTNNAC	6 cut(s)	91, 150, 370, 567, 1070, 1078
Hpy188I	TCNGA	4 cut(s)	307, 433, 657, 987
Hpy188III	TCNNGA	4 cut(s)	385, 551, 865, 934
Hpy8I	GTNNAC	6 cut(s)	91, 150, 370, 567, 1070, 1078
Hpy99I	CGWCG	1 cut(s)	299
HpyAV	CCTTC	2 cut(s)	484, 595
HpyCH4III	ACNGT	5 cut(s)	40, 154, 330, 374, 779
HpyCH4V	TGCA	5 cut(s)	575, 584, 591, 878, 1000
HpyF10VI	GCNNNNNNNGC	2 cut(s)	581, 1036
HpyF3I	CTNAG	3 cut(s)	476, 1035, 1096
Hsp92II	CATG	3 cut(s)	368, 521, 1034
HspAI	GCGC	1 cut(s)	30
Kzo9I	GATC	1 cut(s)	158
LguI	GCTCTTC	2 cut(s)	111, 503
Lsp1109I	GCAGC	1 cut(s)	34
LweI	GCATC	2 cut(s)	601, 1044
MaeI	CTAG	3 cut(s)	45, 1058, 1108
MaeIII	GTNAC	3 cut(s)	664, 964, 979
MalI	GATC	1 cut(s)	160
MboI	GATC	1 cut(s)	158
MboII	GAAGA	5 cut(s)	98, 469, 520, 717, 748
MhlI	GDGCHC	2 cut(s)	38, 786
MluCI	AATT	8 cut(s)	360, 388, 576, 826, 973, 988, 1022, 1040
MlyI	GAGTC	2 cut(s)	529, 772
MmeI	TCCRAC	1 cut(s)	285
MnlI	CCTC	9 cut(s)	65, 207, 216, 533, 590, 706, 814, 865, 919
Mph1103I	ATGCAT	1 cut(s)	586
MseI	TTAA	8 cut(s)	138, 359, 411, 579, 729, 789, 801, 894
MspI	CCGG	1 cut(s)	64
MspR9I	CCNGG	1 cut(s)	65
MvnI	CGCG	1 cut(s)	32
MwoI	GCNNNNNNNGC	2 cut(s)	581, 1036
NciI	CCSGG	1 cut(s)	65
NdeII	GATC	1 cut(s)	158
NheI	GCTAGC	2 cut(s)	44, 1057
NlaIII	CATG	3 cut(s)	368, 521, 1034
NlaIV	GGNNCC	1 cut(s)	82
NmeAIII	GCCGAG	1 cut(s)	786
NsiI	ATGCAT	1 cut(s)	586
NspI	RCATGY	1 cut(s)	1034
PaeI	GCATGC	1 cut(s)	1034
PaeR7I	CTCGAG	1 cut(s)	537
PciSI	GCTCTTC	2 cut(s)	111, 503
PfeI	GAWTC	2 cut(s)	226, 340
PkrI	GCNGC	1 cut(s)	24
PleI	GAGTC	2 cut(s)	529, 771
PpsI	GAGTC	2 cut(s)	529, 771
PshBI	ATTAAT	3 cut(s)	579, 789, 894
PsiI	TTATAA	1 cut(s)	770
PspEI	GGTNACC	1 cut(s)	964
PspN4I	GGNNCC	1 cut(s)	82
PspPI	GGNCC	3 cut(s)	81, 203, 653
PspXI	VCTCGAGB	1 cut(s)	537
RsaI	GTAC	2 cut(s)	376, 907
RsaNI	GTAC	2 cut(s)	375, 906
SapI	GCTCTTC	2 cut(s)	111, 503
SaqAI	TTAA	8 cut(s)	138, 359, 411, 579, 729, 789, 801, 894
SatI	GCNGC	1 cut(s)	23
Sau3AI	GATC	1 cut(s)	158
Sau96I	GGNCC	3 cut(s)	81, 203, 653
SchI	GAGTC	2 cut(s)	529, 772
ScrFI	CCNGG	1 cut(s)	65
SduI	GDGCHC	2 cut(s)	38, 786
SetI	ASST	9 cut(s)	106, 218, 515, 544, 606, 622, 721, 807, 876
SfaNI	GCATC	2 cut(s)	601, 1044
SfcI	CTRYAG	1 cut(s)	615
Sfr274I	CTCGAG	1 cut(s)	537
SinI	GGWCC	2 cut(s)	81, 653
SlaI	CTCGAG	1 cut(s)	537
SmlI	CTYRAG	3 cut(s)	503, 537, 932
SmoI	CTYRAG	3 cut(s)	503, 537, 932
SphI	GCATGC	1 cut(s)	1034
Sse9I	AATT	8 cut(s)	360, 388, 576, 826, 973, 988, 1022, 1040
SsiI	CCGC	2 cut(s)	20, 32
SspI	AATATT	1 cut(s)	919
SspMI	CTAG	3 cut(s)	45, 1058, 1108
StyD4I	CCNGG	1 cut(s)	63
TaaI	ACNGT	5 cut(s)	40, 154, 330, 374, 779
TaqI	TCGA	3 cut(s)	157, 538, 956
TasI	AATT	8 cut(s)	360, 388, 576, 826, 973, 988, 1022, 1040
TatI	WGTACW	1 cut(s)	905
TfiI	GAWTC	2 cut(s)	226, 340
Tru1I	TTAA	8 cut(s)	138, 359, 411, 579, 729, 789, 801, 894
Tru9I	TTAA	8 cut(s)	138, 359, 411, 579, 729, 789, 801, 894
TscAI	CASTG	3 cut(s)	43, 784, 1069
TseI	GCWGC	1 cut(s)	22
TspDTI	ATGAA	5 cut(s)	4, 98, 107, 167, 353
TspGWI	ACGGA	2 cut(s)	438, 1017
TspRI	CASTG	3 cut(s)	43, 784, 1069
VpaK11BI	GGWCC	2 cut(s)	81, 653
VspI	ATTAAT	3 cut(s)	579, 789, 894
XapI	RAATTY	2 cut(s)	388, 988
XceI	RCATGY	1 cut(s)	1034
XhoI	CTCGAG	1 cut(s)	537
XspI	CTAG	3 cut(s)	45, 1058, 1108
Zsp2I	ATGCAT	1 cut(s)	586

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.