Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0003055

Physical Location & Seq

Genomic Coordinates Reverse (-)

21969211 .. 21982921

Gene Structure 13711 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG130500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2466 bp

ATGGAGCTGAGAAGGGTTTCAATCTCGAAACCTTTCTCTTTCTTAATCAAACGCCCATTAAGCTGCGTCCCACGTCCTCAGCCTCCGGCGCCGCCGCCGCCGCCGAATAACCAGAGATTACTTGACCGGGTATCCTCTGTTCTCTCAAACTCATCTTTCAAGTACCCTCAATGTAGATCTCTCATATCCCTCTTGTCCCCTCATGAATTCGATGCCCTCTTCTATTCCGTCGCCACTTCCCCCTCCTCCAATGTCAACCCCAAAACTGCTCTCCGTTTCTTTCACTTCGCTTCTAAAGCTTTTAACTTCCATTTTACCCTCGCCTCTTATTGCCTTTTGGTTCGTGTACTAATTCTTTCCAATCTTAACTCGCCTGCGAGATTGCTTTTGATCCGCTTGATTGACGGCAATGTGCAAGCTTTGTATGCTCTCCCGCCCACTGATAGGCATATTGAGATAGCCATGGCTATGTCCCACTTCAAAACCGCCTACGAAAGAGCTGCTGTGCTTCAGGCGTTGGATATGTTGATTCATCTCTACTGTACTCAGTTCAAGGATTTGGGTTTTTGTTCTGCCCTTCATGTTTTTGAGTTTTTCTCTAATAAGGCTATGTTTCCGTCCCTCAAGACTTGCCATTTTTTGTTGAATTCTTTAGTCAAGGCTGACCAACTTGATAAGAGCTACCGTGTGTTTGAAGTTCTGCTGCGTGGTGTTTCTCCTGATGTTTACTTGTTTACTACTGCAATTCAAGCATTTTGTAAGGGAGGGAAGGTTGATGATGCAATAGGTTTGTTCTCTAAAATGGAGGCACTTGGCATTGCTCCAAATGTTGTTACTTACAACAATGTTATTCACGGGTTATGTAAGAGCAGAAGATTAGAGGAGGCTTTCCAATTCAAGCACAAGATGGTACAAAACAATGTGAATCCCAGTCTGACAACATATGGTGTGCTCCTTAATGGTTTGATTAAGTTGGAGAAGTTTGACAGCGCAAATCATGTTTTGAAGGAAATGTATAGTAAGGGATTTGTCCCCAATGAGGTTATCTATAACATATTGATTAACGGCTATTGTAAAACGGGAAGTACTAGTGAGGCACTCAAGTTAAGGGATGAAATGTTATCCAATGGGGTAACTCCAAATTCTGTTACCATTAACTCGCTACTGCAGGGATTTTGTAAAAGCAACCACTTTGAGCATGCTGAGCAGGTCTTAGATAAGGTGCTATCCAGTGGTTCATCTGTAGACCAAGTCGTTTGTTTCTCAGTCATTCACTCGTTATGCAAGAACTCTAGGTTTGATTCTGCACTGAAATTCACAATTGAAATGCTATTAAGAAACTTCAGGCCCAGCGATAACTTGCTTACAACATTGGTTGTTGGGCTCTGTAAAGATGGAAAGCATTCTGAGGCATCTCAGCTTTGGTTTAGGCTATGGGAGAAAGGGTTTGCAGCCAACACAGTGACCTCAAATGCTCTAATTTATGGAGTTTGTGAATCTGGTAGCATGCAAGAGGTTGCTAGGCTACTCAAGGAAATGGTAAAGAGAGGCTTGGTATTGGATAGGATCTCATGCAACACACTCATCTTGGGTTGGTGCAAGGAGGGAAAAGTGGACCAAGGTTTTAAGATTAGGGACTGGATGGGTAAGAAAGGAATTTTGCCAGACACATATACTTACAATTTGCTAATGCATGGTCTATGTAATATGGGAAAAGTGGATGATGCTGTTAAACTTTGGGAGGAGTGCAGAAAACATGGTCTTGCCGATGTCTATACATATGGGGTGATGATAGATGGGTACTGTAGAGCTGACAGAATTAAAGACGGTGAAGACCTATTTATTGAGTTGGTGACTAAGAAACTTCAGCTGAATTTCATTGTTTATAATACGCTAATAAGAGCATACTGTACAAATGCAAACATGATTGGAGCCCTTGGTCTCTGCTGCGACATGAAAAAGAAGGGTATTGAACCAACTTGTACCACATATTCTTCTCTTATACATGGGATGTGCAATCTTGGTAATGTCGAAGATGCAGAATACCTTCTTGATCAAATGAGGAAGGAGGGTTTGTTGCCCGATGTTGTTTGCTACACTGCACTAATTCATGGTTATTGTAAGCTAGGCCAGATGGATAAAGTAGGGAGTGTTCTTGGAGAGATGTCTTCATATAACGTACAACCTAATAAGATTACATACACTGTCATGATTGATGGGCATTGTAAACTAGGTAATATGGAAGAAGCAACTAAACTTCTATGCGAGATGGAAAAAAAGGGAATTGTCCCGGATGCTGTCACTTACAATGCCTTAACAAATGGATTTTGCAAGGAAAGGATGGTGGAAGAAGCTTTTGAAGTTTGTGATCAAATGTTCAGTAAAGGTCTAGCTTTAGATGAAATTACCTATACGACATTGGTTAGTGGGCTGCATCAAACAGCTACATGTGCAGACGAGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

821

Amino Acids

91.96

Weight (kDa)

8.17

Isoelectric Point (pI)

31.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_long	PF17177	181 - 320	5.3e-09	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	235 - 284	3.3e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	236 - 269	2.9e-10	PPR repeat
PPR_2	PF13041	240 - 288	2.1e-14	PPR repeat family
PPR_1	PF12854	272 - 304	4.4e-11	PPR repeat
PPR_2	PF13041	275 - 324	3.2e-16	PPR repeat family
PPR	PF01535	278 - 308	3.6e-06	PPR repeat
PPR_3	PF13812	300 - 357	6.4e-07	Pentatricopeptide repeat domain
TPR_24	PF23276	331 - 438	2.1e-08	Fungal tetratrico peptide repeats
PPR_3	PF13812	334 - 391	4.3e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	341 - 373	1.7e-11	PPR repeat
PPR_2	PF13041	345 - 394	5.2e-18	PPR repeat family
PPR	PF01535	348 - 378	6.8e-09	PPR repeat
PPR_1	PF12854	376 - 407	4.3e-06	PPR repeat
PPR_3	PF13812	508 - 565	6.2e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	522 - 569	8.9e-16	PPR repeat family
PPR_1	PF12854	551 - 582	3.3e-11	PPR repeat
PPR_2	PF13041	558 - 603	4e-13	PPR repeat family
PPR	PF01535	558 - 588	1.6e-06	PPR repeat
PPR_1	PF12854	589 - 616	5.1e-06	PPR repeat
PPR_3	PF13812	613 - 669	3.6e-09	Pentatricopeptide repeat domain
PPR_long	PF17177	613 - 734	3.7e-09	Pentacotripeptide-repeat region of PRORP
TPR_24	PF23276	619 - 714	3.6e-08	Fungal tetratrico peptide repeats
PPR_2	PF13041	627 - 673	6.5e-14	PPR repeat family
PPR_3	PF13812	651 - 706	5.9e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	655 - 688	2.1e-11	PPR repeat
PPR	PF01535	663 - 692	7.6e-07	PPR repeat
PPR_2	PF13041	666 - 703	1.6e-08	PPR repeat family
PPR_1	PF12854	691 - 714	6.5e-08	PPR repeat
PPR_2	PF13041	694 - 743	1.2e-17	PPR repeat family
PPR	PF01535	697 - 726	2.1e-06	PPR repeat
PPR_long	PF17177	714 - 808	3.2e-10	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	717 - 774	1.4e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	726 - 758	7.6e-11	PPR repeat
PPR	PF01535	732 - 762	5.1e-10	PPR repeat
PPR_2	PF13041	732 - 778	3.6e-17	PPR repeat family
PPR_1	PF12854	760 - 792	1.5e-11	PPR repeat
PPR_2	PF13041	764 - 812	4.3e-14	PPR repeat family
PPR	PF01535	767 - 797	3.2e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003055)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19440 AT4G19440 AT4G19440 AT4G19440
fragaria_vesca	FvH4_4g10410 FvH4_4g10410 FvH4_4g10440 FvH4_5g24430 FvH4_5g24430 FvH4_5g24430 FvH4_5g24430
malus_domestica	MD06G1022200.v1.1
prunus_persica	Prupe.3G018200_v2.0.a1
pyrus_communis	pycom06g01610
rosa_chinensis	RchiOBHm_Chr4g0405931 RchiOBHm_Chr7g0214821 RchiOBHm_Chr7g0219861
rosa_laevigata	RLG00000002716 RLG00000008810
rosa_multiflora	Rmu_sc0002308.1_g000021 Rmu_sc0019702.1_g000004 Rmu_ssc0000087.1_g000071
rosa_roxburghii	Rroxscaffold_3G00244980 Rroxscaffold_5G00350670
rosa_rugosa	Rorug04G0064100 Rorug07G0147600 Rorug07G0147700 Rorug07G0147800
rosa_samantha	Rh4AG134900 Rh4BG130500 Rh4CG142300 Rh4DG129200 Rh7AG284500 Rh7BG275300 Rh7CG303700 Rh7DG287900
rosa_wichuraiana	Rw4G010980 Rw7G024260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1887
Acc36I	ACCTGC	1 cut(s)	1198
AccB1I	GGYRCC	1 cut(s)	88
AccI	GTMKAC	1 cut(s)	1245
AciI	CCGC	7 cut(s)	92, 95, 98, 101, 394, 434, 486
AclWI	GGATC	2 cut(s)	385, 1574
AcsI	RAATTY	6 cut(s)	206, 646, 1141, 1313, 1656, 1873
AcuI	CTGAAG	3 cut(s)	494, 1327, 1850
AcyI	GRCGYC	1 cut(s)	89
AfaI	GTAC	9 cut(s)	164, 348, 544, 912, 1087, 1802, 1912, 1984, 2181
AfiI	CCNNNNNNNGG	2 cut(s)	444, 1039
AflIII	ACRYGT	1 cut(s)	2447
AhlI	ACTAGT	1 cut(s)	1088
AjiI	CACGTC	1 cut(s)	74
Alw21I	GWGCWC	1 cut(s)	954
Alw26I	GTCTC	1 cut(s)	1946
AlwI	GGATC	2 cut(s)	385, 1574
AoxI	GGCC	2 cut(s)	1346, 2128
ApeKI	GCWGC	6 cut(s)	63, 500, 703, 1451, 1947, 2431
ApoI	RAATTY	6 cut(s)	206, 646, 1141, 1313, 1656, 1873
Asp700I	GAANNNNTTC	4 cut(s)	16, 32, 1402, 2046
AspLEI	GCGC	2 cut(s)	91, 992
AspS9I	GGNCC	2 cut(s)	1347, 1615
AsuC2I	CCSGG	2 cut(s)	128, 2291
AsuHPI	GGTGA	3 cut(s)	1798, 1841, 1864
AvaII	GGWCC	1 cut(s)	1615
BanI	GGYRCC	1 cut(s)	88
BanII	GRGCYC	2 cut(s)	1386, 1936
BbsI	GAAGAC	2 cut(s)	1839, 2160
Bbv12I	GWGCWC	1 cut(s)	954
BbvCI	CCTCAGC	1 cut(s)	78
BbvI	GCAGC	6 cut(s)	50, 487, 690, 1463, 1934, 2418
BccI	CCATC	8 cut(s)	901, 1388, 1636, 1790, 2128, 2210, 2263, 2335
BceAI	ACGGC	2 cut(s)	421, 1081
BcgI	CGANNNNNNTGC	2 cut(s)	482, 516
BciVI	GTATCC	1 cut(s)	142
BclI	TGATCA	2 cut(s)	2053, 2368
BcnI	CCSGG	2 cut(s)	128, 2291
BcoDI	GTCTC	1 cut(s)	1946
BcuI	ACTAGT	1 cut(s)	1088
BfaI	CTAG	6 cut(s)	1089, 1293, 1521, 2126, 2231, 2390
BfmI	CTRYAG	3 cut(s)	1166, 1242, 1804
BfoI	RGCGCY	1 cut(s)	92
BfuAI	ACCTGC	1 cut(s)	1198
BfuI	GTATCC	1 cut(s)	142
BglII	AGATCT	1 cut(s)	176
BlpI	GCTNAGC	1 cut(s)	1203
BmcAI	AGTACT	1 cut(s)	1087
Bme1390I	CCNGG	2 cut(s)	128, 2291
Bme18I	GGWCC	1 cut(s)	1615
BmgBI	CACGTC	1 cut(s)	74
BmgT120I	GGNCC	2 cut(s)	1347, 1615
BmiI	GGNNCC	2 cut(s)	90, 1933
BmrFI	CCNGG	2 cut(s)	128, 2291
BmrI	ACTGGG	1 cut(s)	924
BmsI	GCATC	7 cut(s)	202, 769, 1421, 1714, 2026, 2284, 2443
BmuI	ACTGGG	1 cut(s)	924
BpiI	GAAGAC	2 cut(s)	1839, 2160
BplI	GAGNNNNNCTC	2 cut(s)	581, 613
Bpu10I	CCTNAGC	1 cut(s)	78
Bpu1102I	GCTNAGC	1 cut(s)	1203
BpuEI	CTTGAG	3 cut(s)	608, 1085, 1514
BpuMI	CCSGG	2 cut(s)	128, 2291
BsaHI	GRCGYC	1 cut(s)	89
BsaI	GGTCTC	1 cut(s)	1946
BsaJI	CCNNGG	3 cut(s)	462, 1618, 1936
BsaXI	ACNNNNNCTCC	6 cut(s)	756, 786, 1430, 1460, 2060, 2090
Bsc4I	CCNNNNNNNGG	2 cut(s)	444, 1039
Bse1I	ACTGG	3 cut(s)	930, 1230, 1643
Bse3DI	GCAATG	2 cut(s)	415, 816
BseDI	CCNNGG	3 cut(s)	462, 1618, 1936
BseGI	GGATG	6 cut(s)	1117, 1647, 1726, 2016, 2299, 2346
BseLI	CCNNNNNNNGG	2 cut(s)	444, 1039
BseMI	GCAATG	2 cut(s)	415, 816
BseMII	CTCAG	6 cut(s)	92, 560, 1194, 1278, 1398, 1430
BseNI	ACTGG	3 cut(s)	930, 1230, 1643
BseRI	GAGGAG	3 cut(s)	235, 896, 1757
BseXI	GCAGC	6 cut(s)	50, 487, 690, 1463, 1934, 2418
BseYI	CCCAGC	1 cut(s)	1349
BsgI	GTGCAG	3 cut(s)	1290, 1768, 2085
BshFI	GGCC	2 cut(s)	1348, 2130
BshNI	GGYRCC	1 cut(s)	88
BsiHKAI	GWGCWC	1 cut(s)	954
BsiSI	CCGG	3 cut(s)	86, 127, 2291
BslFI	GGGAC	7 cut(s)	53, 181, 457, 604, 1016, 1649, 2273
BslI	CCNNNNNNNGG	2 cut(s)	444, 1039
BsmAI	GTCTC	1 cut(s)	1946
BsmFI	GGGAC	7 cut(s)	53, 181, 457, 604, 1016, 1649, 2273
BsmI	GAATGC	1 cut(s)	1402
BsnI	GGCC	2 cut(s)	1348, 2130
Bso31I	GGTCTC	1 cut(s)	1946
Bsp1286I	GDGCHC	3 cut(s)	954, 1386, 1936
Bsp1407I	TGTACA	1 cut(s)	1910
Bsp143I	GATC	5 cut(s)	176, 390, 1566, 2053, 2368
Bsp1720I	GCTNAGC	1 cut(s)	1203
Bsp19I	CCATGG	1 cut(s)	462
BspACI	CCGC	7 cut(s)	92, 95, 98, 101, 394, 434, 486
BspANI	GGCC	2 cut(s)	1348, 2130
BspCNI	CTCAG	6 cut(s)	91, 559, 1195, 1277, 1399, 1429
BspHI	TCATGA	2 cut(s)	202, 2208
BspLI	GGNNCC	2 cut(s)	90, 1933
BspMAI	CTGCAG	1 cut(s)	1170
BspMI	ACCTGC	1 cut(s)	1198
BspPI	GGATC	2 cut(s)	385, 1574
BspT107I	GGYRCC	1 cut(s)	88
BspTNI	GGTCTC	1 cut(s)	1946
BsrDI	GCAATG	2 cut(s)	415, 816
BsrGI	TGTACA	1 cut(s)	1910
BsrI	ACTGG	3 cut(s)	930, 1230, 1643
BssECI	CCNNGG	3 cut(s)	462, 1618, 1936
BssMI	GATC	5 cut(s)	176, 390, 1566, 2053, 2368
BssNI	GRCGYC	1 cut(s)	89
BssT1I	CCWWGG	3 cut(s)	462, 1618, 1936
Bst4CI	ACNGT	7 cut(s)	542, 686, 1462, 1805, 1829, 1910, 2206
Bst6I	CTCTTC	1 cut(s)	224
BstACI	GRCGYC	1 cut(s)	89
BstAUI	TGTACA	1 cut(s)	1910
BstC8I	GCNNGC	4 cut(s)	375, 417, 1200, 1508
BstDEI	CTNAG	9 cut(s)	8, 78, 546, 1203, 1213, 1264, 1407, 1416, 1857
BstDSI	CCRYGG	1 cut(s)	462
BstF5I	GGATG	6 cut(s)	1117, 1647, 1726, 2016, 2299, 2346
BstH2I	RGCGCY	1 cut(s)	92
BstHHI	GCGC	2 cut(s)	91, 992
BstKTI	GATC	5 cut(s)	179, 393, 1569, 2056, 2371
BstMAI	GTCTC	1 cut(s)	1946
BstMBI	GATC	5 cut(s)	176, 390, 1566, 2053, 2368
BstMWI	GCNNNNNNNGC	9 cut(s)	60, 88, 97, 100, 296, 425, 749, 1204, 2450
BstNSI	RCATGY	3 cut(s)	1202, 1510, 2451
BstSCI	CCNGG	2 cut(s)	126, 2289
BstSFI	CTRYAG	3 cut(s)	1166, 1242, 1804
BstV1I	GCAGC	6 cut(s)	50, 487, 690, 1463, 1934, 2418
BstV2I	GAAGAC	2 cut(s)	1839, 2160
BstX2I	RGATCY	2 cut(s)	176, 1566
BstYI	RGATCY	2 cut(s)	176, 1566
BsuI	GTATCC	1 cut(s)	142
BsuRI	GGCC	2 cut(s)	1348, 2130
BtgI	CCRYGG	1 cut(s)	462
BtrI	CACGTC	1 cut(s)	74
BtsCI	GGATG	6 cut(s)	1117, 1647, 1726, 2016, 2299, 2346
BtsI	GCAGTG	1 cut(s)	2097
BtsIMutI	CAGTG	6 cut(s)	438, 1237, 1307, 1467, 2097, 2202
BveI	ACCTGC	1 cut(s)	1198
Cac8I	GCNNGC	4 cut(s)	375, 417, 1200, 1508
CciI	TCATGA	2 cut(s)	202, 2208
CfoI	GCGC	2 cut(s)	91, 992
Cfr13I	GGNCC	2 cut(s)	1347, 1615
CseI	GACGC	1 cut(s)	55
Csp6I	GTAC	9 cut(s)	163, 347, 543, 911, 1086, 1801, 1911, 1983, 2180
CviQI	GTAC	9 cut(s)	163, 347, 543, 911, 1086, 1801, 1911, 1983, 2180
DdeI	CTNAG	9 cut(s)	8, 78, 546, 1203, 1213, 1264, 1407, 1416, 1857
DinI	GGCGCC	1 cut(s)	90
DpnI	GATC	5 cut(s)	178, 392, 1568, 2055, 2370
DpnII	GATC	5 cut(s)	176, 390, 1566, 2053, 2368
Eam1104I	CTCTTC	1 cut(s)	224
EarI	CTCTTC	1 cut(s)	224
Eco130I	CCWWGG	3 cut(s)	462, 1618, 1936
Eco24I	GRGCYC	2 cut(s)	1386, 1936
Eco31I	GGTCTC	1 cut(s)	1946
Eco47I	GGWCC	1 cut(s)	1615
Eco57I	CTGAAG	3 cut(s)	494, 1327, 1850
EcoRI	GAATTC	2 cut(s)	206, 646
EcoT14I	CCWWGG	3 cut(s)	462, 1618, 1936
EcoT22I	ATGCAT	1 cut(s)	1695
EcoT38I	GRGCYC	2 cut(s)	1386, 1936
EgeI	GGCGCC	1 cut(s)	90
EheI	GGCGCC	1 cut(s)	90
ErhI	CCWWGG	3 cut(s)	462, 1618, 1936
FalI	AAGNNNNNCTT	2 cut(s)	1535, 1567
FaqI	GGGAC	7 cut(s)	53, 181, 457, 604, 1016, 1649, 2273
FauI	CCCGC	1 cut(s)	441
FauNDI	CATATG	2 cut(s)	943, 1780
FbaI	TGATCA	2 cut(s)	2053, 2368
FblI	GTMKAC	1 cut(s)	1245
FokI	GGATG	6 cut(s)	1124, 1654, 1733, 2023, 2306, 2353
FriOI	GRGCYC	2 cut(s)	1386, 1936
FspBI	CTAG	6 cut(s)	1089, 1293, 1521, 2126, 2231, 2390
GlaI	GCGC	2 cut(s)	90, 991
GsaI	CCCAGC	1 cut(s)	1353
HaeII	RGCGCY	1 cut(s)	92
HaeIII	GGCC	2 cut(s)	1348, 2130
HapII	CCGG	3 cut(s)	86, 127, 2291
HgaI	GACGC	1 cut(s)	55
HhaI	GCGC	2 cut(s)	91, 992
Hin1I	GRCGYC	1 cut(s)	89
Hin6I	GCGC	2 cut(s)	89, 990
HinP1I	GCGC	2 cut(s)	89, 990
HincII	GTYRAC	1 cut(s)	256
HindII	GTYRAC	1 cut(s)	256
HindIII	AAGCTT	3 cut(s)	297, 417, 2352
HinfI	GANTC	4 cut(s)	529, 925, 1301, 1496
HpaII	CCGG	3 cut(s)	86, 127, 2291
HphI	GGTGA	3 cut(s)	1798, 1841, 1864
Hpy166II	GTNNAC	7 cut(s)	256, 347, 727, 735, 1246, 1615, 2228
Hpy188I	TCNGA	2 cut(s)	936, 1408
Hpy188III	TCNNGA	6 cut(s)	25, 203, 625, 719, 2051, 2209
Hpy8I	GTNNAC	7 cut(s)	256, 347, 727, 735, 1246, 1615, 2228
Hpy99I	CGWCG	1 cut(s)	233
HpyAV	CCTTC	7 cut(s)	6, 587, 763, 1000, 1957, 2057, 2059
HpyCH4III	ACNGT	7 cut(s)	542, 686, 1462, 1805, 1829, 1910, 2206
HpyCH4IV	ACGT	2 cut(s)	73, 2178
HpyF10VI	GCNNNNNNNGC	9 cut(s)	60, 88, 97, 100, 296, 425, 749, 1204, 2450
HpyF3I	CTNAG	9 cut(s)	8, 78, 546, 1203, 1213, 1264, 1407, 1416, 1857
HpySE526I	ACGT	2 cut(s)	73, 2178
Hsp92I	GRCGYC	1 cut(s)	89
HspAI	GCGC	2 cut(s)	89, 990
KasI	GGCGCC	1 cut(s)	88
Ksp22I	TGATCA	2 cut(s)	2053, 2368
Kzo9I	GATC	5 cut(s)	176, 390, 1566, 2053, 2368
LmnI	GCTCC	4 cut(s)	4, 826, 957, 1931
Lsp1109I	GCAGC	6 cut(s)	50, 487, 690, 1463, 1934, 2418
LweI	GCATC	7 cut(s)	202, 769, 1421, 1714, 2026, 2284, 2443
MaeI	CTAG	6 cut(s)	1089, 1293, 1521, 2126, 2231, 2390
MaeII	ACGT	2 cut(s)	73, 2178
MaeIII	GTNAC	6 cut(s)	832, 1132, 1147, 1462, 1852, 2299
MalI	GATC	5 cut(s)	178, 392, 1568, 2055, 2370
MboI	GATC	5 cut(s)	176, 390, 1566, 2053, 2368
MboII	GAAGA	8 cut(s)	211, 885, 1844, 1986, 2045, 2160, 2255, 2360
MfeI	CAATTG	1 cut(s)	1320
MflI	RGATCY	2 cut(s)	176, 1566
MhlI	GDGCHC	3 cut(s)	954, 1386, 1936
Mly113I	GGCGCC	1 cut(s)	89
MmeI	TCCRAC	2 cut(s)	498, 954
Mph1103I	ATGCAT	1 cut(s)	1695
MroXI	GAANNNNTTC	4 cut(s)	16, 32, 1402, 2046
MslI	CAYNNNNRTG	2 cut(s)	467, 2207
MspA1I	CMGCKG	1 cut(s)	1870
MspI	CCGG	3 cut(s)	86, 127, 2291
MspR9I	CCNGG	2 cut(s)	128, 2291
MunI	CAATTG	1 cut(s)	1320
Mva1269I	GAATGC	1 cut(s)	1402
MwoI	GCNNNNNNNGC	9 cut(s)	60, 88, 97, 100, 296, 425, 749, 1204, 2450
NarI	GGCGCC	1 cut(s)	89
NciI	CCSGG	2 cut(s)	128, 2291
NcoI	CCATGG	1 cut(s)	462
NdeI	CATATG	2 cut(s)	943, 1780
NdeII	GATC	5 cut(s)	176, 390, 1566, 2053, 2368
NlaIV	GGNNCC	2 cut(s)	90, 1933
NmuCI	GTSAC	3 cut(s)	1462, 1852, 2299
NsiI	ATGCAT	1 cut(s)	1695
NspI	RCATGY	3 cut(s)	1202, 1510, 2451
PaeI	GCATGC	2 cut(s)	1202, 1510
PagI	TCATGA	2 cut(s)	202, 2208
PciI	ACATGT	1 cut(s)	2447
PctI	GAATGC	1 cut(s)	1402
PdmI	GAANNNNTTC	4 cut(s)	16, 32, 1402, 2046
PfeI	GAWTC	4 cut(s)	529, 925, 1301, 1496
PflFI	GACNNNGTC	1 cut(s)	1250
PfoI	TCCNGGA	1 cut(s)	2289
PluTI	GGCGCC	1 cut(s)	92
PscI	ACATGT	1 cut(s)	2447
PsiI	TTATAA	1 cut(s)	1887
PspFI	CCCAGC	1 cut(s)	1349
PspN4I	GGNNCC	2 cut(s)	90, 1933
PspPI	GGNCC	2 cut(s)	1347, 1615
PsrI	GAACNNNNNNTAC	4 cut(s)	123, 155, 2136, 2168
PstI	CTGCAG	1 cut(s)	1170
PsuI	RGATCY	2 cut(s)	176, 1566
PsyI	GACNNNGTC	1 cut(s)	1250
PvuII	CAGCTG	1 cut(s)	1870
RsaI	GTAC	9 cut(s)	164, 348, 544, 912, 1087, 1802, 1912, 1984, 2181
RsaNI	GTAC	9 cut(s)	163, 347, 543, 911, 1086, 1801, 1911, 1983, 2180
RseI	CAYNNNNRTG	2 cut(s)	467, 2207
Sau3AI	GATC	5 cut(s)	176, 390, 1566, 2053, 2368
Sau96I	GGNCC	2 cut(s)	1347, 1615
ScaI	AGTACT	1 cut(s)	1087
ScrFI	CCNGG	2 cut(s)	128, 2291
SduI	GDGCHC	3 cut(s)	954, 1386, 1936
SfaNI	GCATC	7 cut(s)	202, 769, 1421, 1714, 2026, 2284, 2443
SfcI	CTRYAG	3 cut(s)	1166, 1242, 1804
SfoI	GGCGCC	1 cut(s)	90
SinI	GGWCC	1 cut(s)	1615
SmiMI	CAYNNNNRTG	2 cut(s)	467, 2207
SmlI	CTYRAG	3 cut(s)	623, 1100, 1529
SmoI	CTYRAG	3 cut(s)	623, 1100, 1529
SpeI	ACTAGT	1 cut(s)	1088
SphI	GCATGC	2 cut(s)	1202, 1510
SsiI	CCGC	7 cut(s)	92, 95, 98, 101, 394, 434, 486
SspDI	GGCGCC	1 cut(s)	88
SspMI	CTAG	6 cut(s)	1089, 1293, 1521, 2126, 2231, 2390
StyD4I	CCNGG	2 cut(s)	126, 2289
StyI	CCWWGG	3 cut(s)	462, 1618, 1936
TaaI	ACNGT	7 cut(s)	542, 686, 1462, 1805, 1829, 1910, 2206
TaiI	ACGT	2 cut(s)	76, 2181
TaqI	TCGA	3 cut(s)	26, 210, 2031
TatI	WGTACW	4 cut(s)	346, 542, 1085, 1910
TauI	GCSGC	4 cut(s)	94, 97, 100, 103
TfiI	GAWTC	4 cut(s)	529, 925, 1301, 1496
TscAI	CASTG	6 cut(s)	445, 1237, 1314, 1467, 2104, 2209
TseFI	GTSAC	3 cut(s)	1462, 1852, 2299
TseI	GCWGC	6 cut(s)	63, 500, 703, 1451, 1947, 2431
Tsp45I	GTSAC	3 cut(s)	1462, 1852, 2299
TspGWI	ACGGA	3 cut(s)	217, 263, 606
TspRI	CASTG	6 cut(s)	445, 1237, 1314, 1467, 2104, 2209
Tth111I	GACNNNGTC	1 cut(s)	1250
VpaK11BI	GGWCC	1 cut(s)	1615
XapI	RAATTY	6 cut(s)	206, 646, 1141, 1313, 1656, 1873
XceI	RCATGY	3 cut(s)	1202, 1510, 2451
XmiI	GTMKAC	1 cut(s)	1245
XmnI	GAANNNNTTC	4 cut(s)	16, 32, 1402, 2046
XspI	CTAG	6 cut(s)	1089, 1293, 1521, 2126, 2231, 2390
ZrmI	AGTACT	1 cut(s)	1087
Zsp2I	ATGCAT	1 cut(s)	1695

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.