Rorug04G0064100

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Reverse (-)
9936675 .. 9941465
4791 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0064100.1

Sequence Viewer

Length: 3408 bp
ATGGAGAGGAACTCGGCAGCGTGTGTGATGGAATGGAGCATTGAGCTAGAGAAGGCTTTGCGGTCTCCAAAGCCAGGCCGCTCGCTTGAAGCCATATCGGAAATCGGTCCAAAATTGGTACGGTTAAGCAGAGAACCAGAGTGTTCTCCAGTTATCTACCACATGTTCGACCTAATTCCCGCTGAGGAGAAGCTCTTCTCCAATGCTATTGTTCTGCGTCTCGCAAGTGCGTTTGAATCTGGGGATAAGCACACAAGGCTCTGTGTTTTGAAGGCATTTTTGTATGAGTACCGGAAGAGAAACAAACGGAAAGAGTACAGAGGAGTTTTATCGAAAACTGAGGCTCATGTGCGGGTAGAGCTTCTGGGGAGAGTTAAGGTTGTGTTTGACAGTGGGGATGTTGAAGATAGGGCTTTGGCTTTGGGTCTATTCGGCTGTTGGGCACATTTTGATAAAGAAAGTCCGAGCATACGATACCTGGTACTCTCTAGTATGGTTTCGCCTCACATTCTGGAGGTAAAAGCGTCCTTATTTGCGGCAGGATGCTTTGCTGAGTTATCAGAGGACTTTGCACGGGTTGCCTTGGAGATGCTGCTTCATATGATGAATTCACCAGAAACATTGCCTGGTATAAGGTTGGCTGGAGCACGCATGTTTGCCAAAGTTGGATTTTCACATTCCATTGCAAATAATGCTTACAAGACAGGTGTGAAGTTGTTATTAGAGTGTTCGGACGAGGATTATCAGGTTGCCATGCTGGTTTCCATTTCCAAACTTGCTTCCAGGTCAACGATTCTTATTTCTGAGCATGCTGACTTGCTTGTGTTGTTTCTTAACAAAGAAAAAACTTTTCATCTTCGGGGAACAGCACTAAGATGCCTGCATTATATTTTCAGTAAAGGAATGTGTCATGTTCCTTTAAACGCATCTCTGGTGAACACATTAGTTAGCATGCTAGATGAACCCCAACTCCCATCACACATGTTATTTCAAGCACTGCAGACGTTGCGTAAGATAATTTTACGTATACATCCTAATCTGCCCTGTGATGTCTTTGAATCCTCTAAGCTGTTAAGCATTGCTACGAATGTATCTGCATCTCCAATTACATCAGAGAGCATGTTAGCCCTTTCTGTTTTGGTAGATATGTCAAGAAAGGTAAAGGGAAGCACAGAGATGGAGTCCCTTGTGCAGTCAGAGTCTCTTCTCCCATCTCGGGTAATTTTGATTATCATAGATCAGATCACTTTGACGGTGAAGCCAGTTTTGGTTCTTTGTCAGATTGATTCTGTAGTGCTTCTGAAAGTTAATTTCCTTCTTGATCTTCTTATCATTCTAAATCGAGAATATCCAGATTTACATCTTCTAGTATTGGATCAAATATTTGGTTTAATCAAGTCCATCTCAATTGTGCATGACAATGTCATGGCTACAACAGACACAGATGCCTTTGTTCATGATAATGCAGATTTAAAAGAGAGCTCAGTTATCAGATCGAAGCTAGTATTTAGGATTTACAGATTTTTAATAACCTTTCTGGAGAATCTCAGTGAAGCTGAAGCCATCTCCACAAAAGTATTTGACAAGGTGAAGATTCTGGTCGAACATTTATGCCAGAGTAACTTGTTTGAGTGCTATGCATACACAATTTACTCTTTGCTGTTGCAACATCAGTTCATTTGGGGTCAGTTGGTGCATGAGAGCGAGGGAAGTTGCAATAGACTCTCGGATATATCTCTTCATAGTTACTCTGTTGGGCGTGAAACTCATGTCATTGAATTTGCTAAGAGGATGCTAACAGAAAAAAATAGTTGGCCTGCTTACAGGGTCGGGACATATGCAGCATGTCAGGGAGCTTGGCACACTGCGACTTTTATATTTGAGCAATTGGTGAAAAGAGTTCGCTCTGATCTGTGCTGTCGCTGGTTGAAATCACTAGTTCATTATGCTCATGGGGAGTGGAAATGGGAGCTGCTTCGATTGCCAAAACAAGGGTTAGAGACACGCAAATTCCCTCTTACACTTTCCATGGATGATTTAGGTGAAATTGGTCAAGATGCAGCTTGTAATATCAAGGAGCATATTTACACTACAGAGCTAGCAGCAGCTTATAACAGTCTCTGCTCTTCTTTGGAAACATTGAGAGTCGATGTCACAACAGGCCAAAGGTTTTATTTCCAGAGATGGTTTTTGTCCTTAAGAGTAAAGTTACTAGGAGCTGTGGTGGATATACTTGATATTTTTAGAAACATAATAAAAAATAGGCAGGGTCTGAAAAGTTCTATGGTTGAATACTTTATTTTGTTGCAGAAACTTGCTCAGATATCTTTGCAGTTAATGAGGGTGGCACAAGAGTTTGATTTAGTTACAACATCTTTCATTGGCATCGACAAGAAAAGTTCAAGTATCATTTCAGCGCTAGCATTAAGTTGCTCTGTGTTGGCCTTTTGTTCTGGTTTTGCTCTCTACATTCCAAGCCTAGCTAATCGCGTTGCTATTTGTGGTCAGGGAGTTGCAAACAATATAGACACAATACTGATACAAAATCTAGTTGGGCGGTTGTGGCACAGTAACAATGAATCCATTACAGATCTCTGTCTGCTTTGGGAGGTGGGTGGAAAGCCTTTTGATTGTTTTCACTTTCGATCAGGAATCCAAGCATGTGAAAATTGTTCCGAAGCAAGAGATATTCTCGGGGTCAGTAGTTATGCGGTTTCAGGGTTTTCTGGCTTGAAAAGCAAGTCTAACAGAGTGCAGAATGAGGAAGGTCTCTCTGAAGTAACCAAGGATGGCCTGCGACTTCTACTTGAAATTCTTATGAAATGGATGCAGATCCCTTTCCGGACTCCCAAGTACTTCTTCAACTTGAGGCCCTGCCTTGGGTCAGAACTCTTTGCTGTCAACGAAACTAGAAACTCAGATGGTATCTCGGTTTCATTAGGCTTCCACTTGTCATTAAATCTCTGCCTTCAATTAAGAAATGCGCCACCAGACATCCCAGTGCGGTTTAACAAATTCTACTGCATGCTCTATTGTAAACTATCCTTTGTGGAGCCAAGATCAAGTGGAGAACACAAGGAGCAAGAGCTGGGTACTTATCAAGCTTGGGAAACCGATGACATGGTAGAAGTTAATGAAAAGCTGTTGAAGTATGCAACCGAATGCAGAACAAGAAAGAGTAATAAGCGTGGAAGGAGTAGTGATGATGAGGACTTTGTGCATTCATTCGTTTGTTTTGAACTGAATGACAGAGGACAAGGGTTCTCTAGTTGCTTGCTTGATGTTTCTGGTTTTCCAGTAGGTTATTATAGAATCAAATGGTATAGCTGTTGTTTTGATAATCAGGGAGAGTGTTGGACCCTCCCCCCTTTGAATCCTGGACCTGTATTTACTGTACAGAGTTTGTAG

Protein Analysis

1135

Amino Acids

128.3

Weight (kDa)

7.13

Isoelectric Point (pI)

45.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
INTS7_N PF24436 66 - 465 1.6e-31 Integrator complex subunit 7, N-terminal
INTS7_C_plants PF22966 961 - 1133 5.8e-72 Integrator complex subunit 7, C-terminal domain in plants
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2112
AccBSI CCGCTC 1 cut(s) 81
AccI GTMKAC 1 cut(s) 1027
AccII CGCG 1 cut(s) 2490
AccIII TCCGGA 1 cut(s) 2841
AciI CCGC 8 cut(s) 61, 79, 180, 352, 536, 2557, 2711, 3004
AclWI GGATC 2 cut(s) 1383, 2827
AcsI RAATTY 5 cut(s) 607, 1778, 2009, 2811, 3014
AcuI CTGAAG 2 cut(s) 1578, 2796
AfaI GTAC 7 cut(s) 120, 290, 317, 483, 2855, 3094, 3396
AfeI AGCGCT 1 cut(s) 2418
AfiI CCNNNNNNNGG 5 cut(s) 74, 1216, 1991, 2879, 2880
AflII CTTAAG 1 cut(s) 2197
AflIII ACRYGT 2 cut(s) 162, 981
AhlI ACTAGT 1 cut(s) 1936
AjnI CCWGG 5 cut(s) 73, 477, 625, 782, 3376
AjuI GAANNNNNNNTTGG 4 cut(s) 1250, 1282, 2843, 2875
AloI GAACNNNNNNTCC 2 cut(s) 954, 986
Alw21I GWGCWC 2 cut(s) 649, 1484
Alw26I GTCTC 6 cut(s) 69, 224, 1206, 1994, 2123, 2774
AlwI GGATC 2 cut(s) 1383, 2827
AlwNI CAGNNNCTG 2 cut(s) 2121, 2272
Ama87I CYCGRG 2 cut(s) 1215, 2693
Aor13HI TCCGGA 1 cut(s) 2841
Aor51HI AGCGCT 1 cut(s) 2418
AoxI GGCC 6 cut(s) 76, 1814, 2161, 2442, 2791, 2870
ApeKI GCWGC 7 cut(s) 17, 592, 1841, 1972, 2060, 2102, 2105
ApoI RAATTY 5 cut(s) 607, 1778, 2009, 2811, 3014
Asp700I GAANNNNTTC 1 cut(s) 194
AspLEI GCGC 2 cut(s) 2419, 2986
AspS9I GGNCC 4 cut(s) 107, 2871, 3357, 3380
AsuHPI GGTGA 6 cut(s) 603, 946, 1267, 1600, 1903, 2054
AsuNHI GCTAGC 2 cut(s) 2098, 2419
AvaI CYCGRG 2 cut(s) 1215, 2693
AvaII GGWCC 3 cut(s) 107, 3357, 3380
BaeGI GKGCMC 1 cut(s) 445
BaeI ACNNNNGTAYC 2 cut(s) 1074, 1107
BanII GRGCYC 1 cut(s) 1484
Bbv12I GWGCWC 2 cut(s) 649, 1484
BbvCI CCTCAGC 1 cut(s) 183
BbvI GCAGC 7 cut(s) 29, 579, 1853, 1959, 2072, 2114, 2117
BccI CCATC 9 cut(s) 22, 982, 1171, 1219, 1409, 1571, 2178, 2783, 2915
BciT130I CCWGG 5 cut(s) 75, 479, 627, 784, 3378
BcoDI GTCTC 6 cut(s) 69, 224, 1206, 1994, 2123, 2774
BcuI ACTAGT 1 cut(s) 1936
BfmI CTRYAG 3 cut(s) 998, 1290, 2091
BfoI RGCGCY 1 cut(s) 2420
BfrI CTTAAG 1 cut(s) 2197
BglII AGATCT 1 cut(s) 2590
BisI GCNGC 9 cut(s) 18, 79, 537, 593, 1842, 1973, 2061, 2103, 2106
BlsI GCNGC 9 cut(s) 19, 80, 538, 594, 1843, 1974, 2062, 2104, 2107
BmcAI AGTACT 1 cut(s) 2855
Bme1390I CCNGG 5 cut(s) 75, 479, 627, 784, 3378
Bme18I GGWCC 3 cut(s) 107, 3357, 3380
BmeT110I CYCGRG 2 cut(s) 1215, 2693
BmgT120I GGNCC 4 cut(s) 107, 2871, 3357, 3380
BmiI GGNNCC 2 cut(s) 3054, 3359
BmrFI CCNGG 5 cut(s) 75, 479, 627, 784, 3378
BmrI ACTGGG 1 cut(s) 2993
BmtI GCTAGC 2 cut(s) 2102, 2423
BmuI ACTGGG 1 cut(s) 2993
BplI GAGNNNNNCTC 3 cut(s) 28, 2676, 2708
BpmI CTGGAG 4 cut(s) 132, 533, 663, 1559
Bpu10I CCTNAGC 1 cut(s) 183
BpuEI CTTGAG 1 cut(s) 2887
BsaAI YACGTR 1 cut(s) 1025
BsaBI GATNNNNATC 2 cut(s) 1359, 2831
BsaI GGTCTC 2 cut(s) 69, 2774
BsaJI CCNNGG 4 cut(s) 582, 2028, 2784, 2878
BsaWI WCCGGW 2 cut(s) 291, 2841
BsaXI ACNNNNNCTCC 4 cut(s) 954, 984, 2208, 2238
Bsc4I CCNNNNNNNGG 5 cut(s) 74, 1216, 1991, 2879, 2880
Bse1I ACTGG 4 cut(s) 149, 1262, 2999, 3296
Bse3DI GCAATG 3 cut(s) 620, 681, 1077
Bse8I GATNNNNATC 2 cut(s) 1359, 2831
BseAI TCCGGA 1 cut(s) 2841
BseBI CCWGG 5 cut(s) 75, 479, 627, 784, 3378
BseDI CCNNGG 4 cut(s) 582, 2028, 2784, 2878
BseGI GGATG 8 cut(s) 403, 548, 1030, 1797, 2038, 2794, 2832, 2994
BseJI GATNNNNATC 2 cut(s) 1359, 2831
BseLI CCNNNNNNNGG 5 cut(s) 74, 1216, 1991, 2879, 2880
BseMI GCAATG 3 cut(s) 620, 681, 1077
BseMII CTCAG 8 cut(s) 174, 330, 543, 795, 1497, 1561, 2333, 2931
BseNI ACTGG 4 cut(s) 149, 1262, 2999, 3296
BseRI GAGGAG 2 cut(s) 200, 336
BseSI GKGCMC 1 cut(s) 445
BseXI GCAGC 7 cut(s) 29, 579, 1853, 1959, 2072, 2114, 2117
BseYI CCCAGC 1 cut(s) 3088
BsgI GTGCAG 2 cut(s) 1211, 2774
Bsh1236I CGCG 1 cut(s) 2490
BshFI GGCC 6 cut(s) 78, 1816, 2163, 2444, 2793, 2872
BsiHKAI GWGCWC 2 cut(s) 649, 1484
BsiHKCI CYCGRG 2 cut(s) 1215, 2693
BsiSI CCGG 2 cut(s) 292, 2842
BslFI GGGAC 2 cut(s) 1168, 1846
BslI CCNNNNNNNGG 5 cut(s) 74, 1216, 1991, 2879, 2880
BsmAI GTCTC 6 cut(s) 69, 224, 1206, 1994, 2123, 2774
BsmBI CGTCTC 1 cut(s) 224
BsmFI GGGAC 2 cut(s) 1168, 1846
BsmI GAATGC 2 cut(s) 3167, 3220
BsnI GGCC 6 cut(s) 78, 1816, 2163, 2444, 2793, 2872
Bso31I GGTCTC 2 cut(s) 69, 2774
BsoBI CYCGRG 2 cut(s) 1215, 2693
Bsp1286I GDGCHC 3 cut(s) 445, 649, 1484
Bsp13I TCCGGA 1 cut(s) 2841
Bsp1407I TGTACA 1 cut(s) 3394
Bsp19I CCATGG 1 cut(s) 2028
BspACI CCGC 8 cut(s) 61, 79, 180, 352, 536, 2557, 2711, 3004
BspANI GGCC 6 cut(s) 78, 1816, 2163, 2444, 2793, 2872
BspCNI CTCAG 8 cut(s) 175, 331, 544, 796, 1496, 1560, 2332, 2930
BspEI TCCGGA 1 cut(s) 2841
BspFNI CGCG 1 cut(s) 2490
BspHI TCATGA 1 cut(s) 1456
BspLI GGNNCC 2 cut(s) 3054, 3359
BspMAI CTGCAG 1 cut(s) 1002
BspOI GCTAGC 2 cut(s) 2102, 2423
BspPI GGATC 2 cut(s) 1383, 2827
BspQI GCTCTTC 2 cut(s) 200, 2131
BspTI CTTAAG 1 cut(s) 2197
BspTNI GGTCTC 2 cut(s) 69, 2774
BsrBI CCGCTC 1 cut(s) 81
BsrDI GCAATG 3 cut(s) 620, 681, 1077
BsrGI TGTACA 1 cut(s) 3394
BsrI ACTGG 4 cut(s) 149, 1262, 2999, 3296
BssECI CCNNGG 4 cut(s) 582, 2028, 2784, 2878
BssNAI GTATAC 1 cut(s) 1028
BssT1I CCWWGG 4 cut(s) 582, 2028, 2784, 2878
Bst1107I GTATAC 1 cut(s) 1028
Bst2UI CCWGG 5 cut(s) 75, 479, 627, 784, 3378
Bst4CI ACNGT 6 cut(s) 123, 392, 1255, 2117, 2570, 3394
Bst6I CTCTTC 5 cut(s) 200, 290, 1209, 1743, 2131
BstAFI CTTAAG 1 cut(s) 2197
BstAPI GCANNNNNTGC 3 cut(s) 578, 692, 1006
BstAUI TGTACA 1 cut(s) 3394
BstBAI YACGTR 1 cut(s) 1025
BstDSI CCRYGG 1 cut(s) 2028
BstF5I GGATG 8 cut(s) 403, 548, 1030, 1797, 2038, 2794, 2832, 2994
BstFNI CGCG 1 cut(s) 2490
BstH2I RGCGCY 1 cut(s) 2420
BstHHI GCGC 2 cut(s) 2419, 2986
BstMAI GTCTC 6 cut(s) 69, 224, 1206, 1994, 2123, 2774
BstMWI GCNNNNNNNGC 8 cut(s) 256, 358, 578, 692, 1006, 1981, 2563, 2736
BstNI CCWGG 5 cut(s) 75, 479, 627, 784, 3378
BstNSI RCATGY 9 cut(s) 166, 655, 812, 955, 985, 1123, 1848, 2664, 3028
BstSCI CCNGG 5 cut(s) 73, 477, 625, 782, 3376
BstSFI CTRYAG 3 cut(s) 998, 1290, 2091
BstSLI GKGCMC 1 cut(s) 445
BstSNI TACGTA 1 cut(s) 1025
BstUI CGCG 1 cut(s) 2490
BstV1I GCAGC 7 cut(s) 29, 579, 1853, 1959, 2072, 2114, 2117
BstX2I RGATCY 2 cut(s) 2590, 2832
BstYI RGATCY 2 cut(s) 2590, 2832
BstZ17I GTATAC 1 cut(s) 1028
BsuRI GGCC 6 cut(s) 78, 1816, 2163, 2444, 2793, 2872
BtgI CCRYGG 1 cut(s) 2028
BtsCI GGATG 8 cut(s) 403, 548, 1030, 1797, 2038, 2794, 2832, 2994
BtsI GCAGTG 2 cut(s) 995, 1863
BtsIMutI CAGTG 5 cut(s) 397, 995, 1555, 1863, 3006
CaiI CAGNNNCTG 2 cut(s) 2121, 2272
CciI TCATGA 1 cut(s) 1456
CfoI GCGC 2 cut(s) 2419, 2986
Cfr13I GGNCC 4 cut(s) 107, 2871, 3357, 3380
CseI GACGC 2 cut(s) 206, 513
CsiI ACCWGGT 1 cut(s) 477
Csp6I GTAC 7 cut(s) 119, 289, 316, 482, 2854, 3093, 3395
CviQI GTAC 7 cut(s) 119, 289, 316, 482, 2854, 3093, 3395
DraI TTTAAA 2 cut(s) 921, 1473
Eam1104I CTCTTC 5 cut(s) 200, 290, 1209, 1743, 2131
EarI CTCTTC 5 cut(s) 200, 290, 1209, 1743, 2131
Ecl136II GAGCTC 1 cut(s) 1482
Eco105I TACGTA 1 cut(s) 1025
Eco130I CCWWGG 4 cut(s) 582, 2028, 2784, 2878
Eco24I GRGCYC 1 cut(s) 1484
Eco31I GGTCTC 2 cut(s) 69, 2774
Eco32I GATATC 1 cut(s) 2325
Eco47I GGWCC 3 cut(s) 107, 3357, 3380
Eco47III AGCGCT 1 cut(s) 2418
Eco53kI GAGCTC 1 cut(s) 1482
Eco57I CTGAAG 2 cut(s) 1578, 2796
Eco88I CYCGRG 2 cut(s) 1215, 2693
EcoICRI GAGCTC 1 cut(s) 1482
EcoO109I RGGNCCY 1 cut(s) 2871
EcoRI GAATTC 1 cut(s) 607
EcoRII CCWGG 5 cut(s) 73, 477, 625, 782, 3376
EcoRV GATATC 1 cut(s) 2325
EcoT14I CCWWGG 4 cut(s) 582, 2028, 2784, 2878
EcoT22I ATGCAT 1 cut(s) 1642
EcoT38I GRGCYC 1 cut(s) 1484
ErhI CCWWGG 4 cut(s) 582, 2028, 2784, 2878
Esp3I CGTCTC 1 cut(s) 224
FalI AAGNNNNNCTT 2 cut(s) 2843, 2875
FaqI GGGAC 2 cut(s) 1168, 1846
FauI CCCGC 2 cut(s) 187, 345
FauNDI CATATG 2 cut(s) 600, 1837
FblI GTMKAC 1 cut(s) 1027
Fnu4HI GCNGC 9 cut(s) 18, 79, 537, 593, 1842, 1973, 2061, 2103, 2106
FokI GGATG 8 cut(s) 410, 555, 1017, 1804, 2045, 2801, 2839, 2981
FriOI GRGCYC 1 cut(s) 1484
Fsp4HI GCNGC 9 cut(s) 18, 79, 537, 593, 1842, 1973, 2061, 2103, 2106
GlaI GCGC 2 cut(s) 2418, 2985
GluI GCNGC 9 cut(s) 18, 79, 537, 593, 1842, 1973, 2061, 2103, 2106
GsaI CCCAGC 1 cut(s) 3092
GsuI CTGGAG 4 cut(s) 132, 533, 663, 1559
HaeII RGCGCY 1 cut(s) 2420
HaeIII GGCC 6 cut(s) 78, 1816, 2163, 2444, 2793, 2872
HapII CCGG 2 cut(s) 292, 2842
HgaI GACGC 2 cut(s) 206, 513
HhaI GCGC 2 cut(s) 2419, 2986
Hin6I GCGC 2 cut(s) 2417, 2984
HinP1I GCGC 2 cut(s) 2417, 2984
HincII GTYRAC 2 cut(s) 789, 2902
HindII GTYRAC 2 cut(s) 789, 2902
HindIII AAGCTT 1 cut(s) 3102
HpaII CCGG 2 cut(s) 292, 2842
HphI GGTGA 6 cut(s) 603, 946, 1267, 1600, 1903, 2054
Hpy166II GTNNAC 5 cut(s) 789, 937, 1028, 2902, 3038
Hpy8I GTNNAC 5 cut(s) 789, 937, 1028, 2902, 3038
HpyAV CCTTC 6 cut(s) 46, 265, 1325, 2759, 2978, 3186
HpyCH4III ACNGT 6 cut(s) 123, 392, 1255, 2117, 2570, 3394
HpyCH4IV ACGT 2 cut(s) 1004, 1024
HpyF10VI GCNNNNNNNGC 8 cut(s) 256, 358, 578, 692, 1006, 1981, 2563, 2736
HpySE526I ACGT 2 cut(s) 1004, 1024
HspAI GCGC 2 cut(s) 2417, 2984
Kpn2I TCCGGA 1 cut(s) 2841
LguI GCTCTTC 2 cut(s) 200, 2131
LmnI GCTCC 8 cut(s) 36, 644, 1853, 1969, 2077, 2216, 3052, 3079
Lsp1109I GCAGC 7 cut(s) 29, 579, 1853, 1959, 2072, 2114, 2117
MabI ACCWGGT 1 cut(s) 477
MaeII ACGT 2 cut(s) 1004, 1024
MaeIII GTNAC 7 cut(s) 1619, 1745, 2152, 2208, 2365, 2570, 2779
MbiI CCGCTC 1 cut(s) 81
MfeI CAATTG 2 cut(s) 1407, 1886
MflI RGATCY 2 cut(s) 2590, 2832
MhlI GDGCHC 3 cut(s) 445, 649, 1484
MlyI GAGTC 5 cut(s) 1190, 1208, 1716, 2154, 2839
MmeI TCCRAC 2 cut(s) 646, 3335
Mph1103I ATGCAT 1 cut(s) 1642
MroI TCCGGA 1 cut(s) 2841
MroXI GAANNNNTTC 1 cut(s) 194
MslI CAYNNNNRTG 5 cut(s) 874, 1175, 1419, 1461, 2999
MspA1I CMGCKG 1 cut(s) 182
MspCI CTTAAG 1 cut(s) 2197
MspI CCGG 2 cut(s) 292, 2842
MspR9I CCNGG 5 cut(s) 75, 479, 627, 784, 3378
MunI CAATTG 2 cut(s) 1407, 1886
Mva1269I GAATGC 2 cut(s) 3167, 3220
MvaI CCWGG 5 cut(s) 75, 479, 627, 784, 3378
MvnI CGCG 1 cut(s) 2490
MwoI GCNNNNNNNGC 8 cut(s) 256, 358, 578, 692, 1006, 1981, 2563, 2736
NcoI CCATGG 1 cut(s) 2028
NdeI CATATG 2 cut(s) 600, 1837
NheI GCTAGC 2 cut(s) 2098, 2419
NlaIV GGNNCC 2 cut(s) 3054, 3359
NmuCI GTSAC 1 cut(s) 2152
NsiI ATGCAT 1 cut(s) 1642
NspI RCATGY 9 cut(s) 166, 655, 812, 955, 985, 1123, 1848, 2664, 3028
PaeI GCATGC 3 cut(s) 812, 955, 3028
PagI TCATGA 1 cut(s) 1456
PciI ACATGT 2 cut(s) 162, 981
PciSI GCTCTTC 2 cut(s) 200, 2131
PctI GAATGC 2 cut(s) 3167, 3220
PdmI GAANNNNTTC 1 cut(s) 194
PflFI GACNNNGTC 1 cut(s) 1421
PfoI TCCNGGA 1 cut(s) 3376
PkrI GCNGC 9 cut(s) 19, 80, 538, 594, 1843, 1974, 2062, 2104, 2107
PleI GAGTC 5 cut(s) 1189, 1207, 1716, 2153, 2839
PpsI GAGTC 5 cut(s) 1189, 1207, 1716, 2153, 2839
Ppu21I YACGTR 1 cut(s) 1025
PscI ACATGT 2 cut(s) 162, 981
PsiI TTATAA 1 cut(s) 2112
Psp124BI GAGCTC 1 cut(s) 1484
Psp6I CCWGG 5 cut(s) 73, 477, 625, 782, 3376
PspFI CCCAGC 1 cut(s) 3088
PspGI CCWGG 5 cut(s) 73, 477, 625, 782, 3376
PspN4I GGNNCC 2 cut(s) 3054, 3359
PspPI GGNCC 4 cut(s) 107, 2871, 3357, 3380
PstI CTGCAG 1 cut(s) 1002
PstNI CAGNNNCTG 2 cut(s) 2121, 2272
PsuI RGATCY 2 cut(s) 2590, 2832
PsyI GACNNNGTC 1 cut(s) 1421
RsaI GTAC 7 cut(s) 120, 290, 317, 483, 2855, 3094, 3396
RsaNI GTAC 7 cut(s) 119, 289, 316, 482, 2854, 3093, 3395
RseI CAYNNNNRTG 5 cut(s) 874, 1175, 1419, 1461, 2999
SacI GAGCTC 1 cut(s) 1484
SapI GCTCTTC 2 cut(s) 200, 2131
SatI GCNGC 9 cut(s) 18, 79, 537, 593, 1842, 1973, 2061, 2103, 2106
Sau96I GGNCC 4 cut(s) 107, 2871, 3357, 3380
ScaI AGTACT 1 cut(s) 2855
SchI GAGTC 5 cut(s) 1190, 1208, 1716, 2154, 2839
ScrFI CCNGG 5 cut(s) 75, 479, 627, 784, 3378
SduI GDGCHC 3 cut(s) 445, 649, 1484
SexAI ACCWGGT 1 cut(s) 477
SfcI CTRYAG 3 cut(s) 998, 1290, 2091
SinI GGWCC 3 cut(s) 107, 3357, 3380
SmiMI CAYNNNNRTG 5 cut(s) 874, 1175, 1419, 1461, 2999
SmlI CTYRAG 2 cut(s) 2197, 2866
SmoI CTYRAG 2 cut(s) 2197, 2866
SnaBI TACGTA 1 cut(s) 1025
SpeI ACTAGT 1 cut(s) 1936
SphI GCATGC 3 cut(s) 812, 955, 3028
SsiI CCGC 8 cut(s) 61, 79, 180, 352, 536, 2557, 2711, 3004
SspI AATATT 1 cut(s) 1383
SstI GAGCTC 1 cut(s) 1484
StyD4I CCNGG 5 cut(s) 73, 477, 625, 782, 3376
StyI CCWWGG 4 cut(s) 582, 2028, 2784, 2878
TaaI ACNGT 6 cut(s) 123, 392, 1255, 2117, 2570, 3394
TaiI ACGT 2 cut(s) 1007, 1027
TaqI TCGA 9 cut(s) 168, 332, 1342, 1496, 1602, 1978, 2148, 2388, 2644
TaqII GACCGA 1 cut(s) 95
TatI WGTACW 3 cut(s) 315, 2853, 3394
TauI GCSGC 2 cut(s) 81, 539
TscAI CASTG 5 cut(s) 397, 1002, 1555, 1870, 3006
TseFI GTSAC 1 cut(s) 2152
TseI GCWGC 7 cut(s) 17, 592, 1841, 1972, 2060, 2102, 2105
Tsp45I GTSAC 1 cut(s) 2152
TspGWI ACGGA 1 cut(s) 322
TspRI CASTG 5 cut(s) 397, 1002, 1555, 1870, 3006
Tth111I GACNNNGTC 1 cut(s) 1421
Vha464I CTTAAG 1 cut(s) 2197
VpaK11BI GGWCC 3 cut(s) 107, 3357, 3380
XapI RAATTY 5 cut(s) 607, 1778, 2009, 2811, 3014
XceI RCATGY 9 cut(s) 166, 655, 812, 955, 985, 1123, 1848, 2664, 3028
XmiI GTMKAC 1 cut(s) 1027
XmnI GAANNNNTTC 1 cut(s) 194
ZrmI AGTACT 1 cut(s) 2855
Zsp2I ATGCAT 1 cut(s) 1642
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.