RchiOBHm_Chr4g0405931

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0003055
Physical Location & Seq
Reverse (-)
26842997 .. 26849018
6022 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37737

Sequence Viewer

Length: 2463 bp
ATGGAGCTGAGAAGGGTTTCAATCTCGAAACCTTGCTCTTTCTTAATCAAACGCCCACTAAGCTGCGTCCCACGCCCTCAGCCTCCGCCGCCGCCGCCGCCGAACAACCAGAGATTACTTGACCGGGTATCCTCTGTTCTCTCAAACTCATCTTTCAAGTACCCTCAATGTAGATCTCTCATATCCCTCTTGTCCCCTCATGAATTCGATGCCCTCTTCTATTCCGTCGCCGCTTCCCCCTCCTCCAATGTCAACCCCAAAACTGCTCTCCGTTTCTTTCACTTCGCTTCCAAAGCTTTCAACTTCCATTTCACCCTCGCCTCTTATTGCCTTTTGGTTCGTGTACTAATTCTTTCCAATCTTAACTCGCCTGCGAGATTGCTTTTGATCCGCTTGATTGATGGCAATGTGCAAGCTTTGTATGCCCTCCCGCCCACTGAGAGGCACATTGAGATAGCCATGGCTATGTCCCACTTCAAAACCGCCTACGAAAGAGCTTCTGTGCTTCAGGCGTTGGATATGTTGATTCATCTTTACTGTACTCAGTTCAAGGATTTGGGTTTTTGTTCTGCCGTTCATGTTTTTGAGTTTTTCTCTAGTAAGGCTATGTTTCCGTCCCTCAGGACTTGCCATTTTTTGTTGAATTCTCTAGTCAAGGCTGACCAACTTGATAAGAGCTACCGTGTGTTTGAAGTTCTGTCTCGTGCTGTTTCTCCGGATGTTTACTTGTTTACTACTGCAATTCAAGCATTTTGTAAGGGAGGGAAGGTTGATGAGGCAATAGGTTTGTTCTCTAAAATGGAGGCACTTGGCATTGCTCCAAATGTTGTTACTTACAACAATGTTATTCACGGGTTATGTAAGAGCAGAAGATTAGAGGAGGCTTTCCAATTCAAGGACAAGATGGTACAAAACAATGTGAATCCCAGTCTGACAACATATGGTGTGCTCCTTAATGGTTTGATTAAGTTGGAGAAGTTTGACGACGCAAATCATGTTTTGAAGGAAATGTATTGTAAGGGATTTGCCCCCAATGAGGTTATCTATAACATATTGATTGACGGCTATTGTAAAACGGGAAGTACTAGTGAGGCACTGAAGTTAAGGGATGAAATGTTATCCAATGGGGTAACTCCAAATTCTGTTACCATTAACTCGCTACTGCAGGGATTTTGTAAAAGCAACCACTTTGAGCATGCTGAGCAGGTCTTAGATAAGGTGCTATCCAGTGGTTCATCTGTAGACCAAGTCGTTTGTTTCTCAGTCATTCACTCGTTATGCAAGAACTCTAGGTTTGATTCTGCACTGAAATTCACAATTGAAATGCTATTAAGAAACTTCAGGCCCAGCGATAACTTGCTTACAACATTGGTTGTTGGGCTCTGTAAAGATGGAAAGCATTCTGAGGCATCTCAGCTTTGGTTTAGGCTATGGGAGAAAGGGTTTGCAGCCAACACAGTGACCTCAAATGCTCTAATTTATGGAGTTTGTGAATCTGGTAGCATGCAAGAGGTTGCTAGGCTACTCAAGGAAATGGTAAAGAGAGGCTTGGTATTGGATAGGATCTCATGCAACACACTCATCTTGGGTTGGTGCAAGGAGGGAAAAGTGGACGAAGGTTTTAAGATTAGGGACTGGATGGGTAAGAAAGGAATTTTGCCAGACACATATACTTACAATTTGCTAATGCATGGTCTATGTAATATGGGAAAAGTGGATGATGCTGTTAAACTTTGGGAGGAGTGCAGAAAACATGGTCTTGCCGATGTCTATACATATGGGGTGATGATAGATGGGTACTGTAGAGCTGACAGAATTAAAGACGGTGAAGACCTATTTATTGAGTTGGTGACTAAGAAACTTCAGCTGAATTTCATTCTTTATAATACGCTTATAAGAGCATACTGTACAAATGCGAACGTGATTGGAGCCCTTGGTCTCTGCTGCGACATGAAAAAGAAGGGTATTGAACCAACTTGTACCACATATTCTTCTCTTATACATGGGATGTGCAATATTGGTAATGTCAAAGATGCAGAATACCTTCTTGATCAAATGAGGAAGGAGGGTTTGTTGCCCGATGTTGTTTGCTACACTGCACTAATTCATGGTTATTGTAAGCTAGGCCAGATGGATAAAGTAGGGAGTGTTCTTGGAGAGATGTCTTCATATAACGTACAACCTAATAAGATTACATACACTGTCATGATTGATGGGCATTGTAAACTAGGTAATATGGAAGAAGCAACTAAACTTCTATGCGAGATGGAAAAAAAGGGAATTGTCCCGGATGCTGTCACTTACAATGCCTTAACAAATGGATTTTGCAAGGAAAGGATGGTGGAAGAAGCTTTTGAAGTTTGTGATCAAATGTTCAGTAAAGGTCTAGCTTTAGATGAAATTACCTATACGACATTGGTTAGTGGGCTGCATCAAACAGCTACATGTGCAGACGAGGAATGA

Protein Analysis

820

Amino Acids

91.81

Weight (kDa)

7.93

Isoelectric Point (pI)

31.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_long PF17177 180 - 319 2.4e-09 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 234 - 283 4.2e-07 Pentatricopeptide repeat domain
PPR_1 PF12854 237 - 268 2.4e-09 PPR repeat
PPR_2 PF13041 239 - 280 3.6e-11 PPR repeat family
PPR PF01535 243 - 272 5.6e-06 PPR repeat
PPR_1 PF12854 271 - 303 1e-11 PPR repeat
PPR_2 PF13041 274 - 323 2.2e-16 PPR repeat family
PPR PF01535 277 - 307 2.1e-06 PPR repeat
PPR_3 PF13812 299 - 356 5.9e-07 Pentatricopeptide repeat domain
TPR_24 PF23276 332 - 437 1.5e-08 Fungal tetratrico peptide repeats
PPR_3 PF13812 333 - 390 6.6e-07 Pentatricopeptide repeat domain
PPR_1 PF12854 340 - 372 4.8e-11 PPR repeat
PPR_2 PF13041 344 - 393 7.7e-18 PPR repeat family
PPR PF01535 347 - 377 8.2e-09 PPR repeat
PPR_1 PF12854 375 - 406 4.2e-06 PPR repeat
PPR_3 PF13812 507 - 564 7.9e-07 Pentatricopeptide repeat domain
PPR_2 PF13041 521 - 568 5.1e-16 PPR repeat family
PPR_1 PF12854 550 - 581 3.3e-11 PPR repeat
PPR PF01535 557 - 587 1.6e-06 PPR repeat
PPR_2 PF13041 558 - 602 1.1e-12 PPR repeat family
PPR_1 PF12854 588 - 615 5.1e-06 PPR repeat
PPR_3 PF13812 612 - 668 8.4e-09 Pentatricopeptide repeat domain
PPR_long PF17177 612 - 734 9.6e-09 Pentacotripeptide-repeat region of PRORP
TPR_24 PF23276 618 - 713 3e-08 Fungal tetratrico peptide repeats
PPR_2 PF13041 626 - 672 9e-14 PPR repeat family
PPR_3 PF13812 650 - 705 2.9e-11 Pentatricopeptide repeat domain
PPR_1 PF12854 654 - 687 2.2e-11 PPR repeat
PPR PF01535 662 - 691 6.9e-06 PPR repeat
PPR_2 PF13041 662 - 703 3.7e-10 PPR repeat family
PPR_1 PF12854 690 - 713 6.5e-08 PPR repeat
PPR_2 PF13041 693 - 742 1.2e-17 PPR repeat family
PPR PF01535 696 - 725 2.1e-06 PPR repeat
PPR_long PF17177 712 - 807 2.6e-10 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 716 - 773 1.3e-09 Pentatricopeptide repeat domain
PPR_1 PF12854 725 - 757 7.6e-11 PPR repeat
PPR PF01535 731 - 761 5.1e-10 PPR repeat
PPR_2 PF13041 733 - 777 5.5e-16 PPR repeat family
PPR_1 PF12854 759 - 791 1.5e-11 PPR repeat
PPR_2 PF13041 763 - 811 4.3e-14 PPR repeat family
PPR PF01535 766 - 796 3.2e-07 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1884, 1895
Acc36I ACCTGC 1 cut(s) 1195
AccI GTMKAC 1 cut(s) 1242
AccIII TCCGGA 1 cut(s) 715
AciI CCGC 9 cut(s) 86, 89, 92, 95, 98, 231, 391, 431, 483
AclWI GGATC 2 cut(s) 382, 1571
AcsI RAATTY 6 cut(s) 203, 643, 1138, 1310, 1653, 1870
AcuI CTGAAG 4 cut(s) 491, 1118, 1324, 1847
AfaI GTAC 9 cut(s) 161, 345, 541, 909, 1084, 1799, 1909, 1981, 2178
AfiI CCNNNNNNNGG 3 cut(s) 441, 895, 1036
AflIII ACRYGT 1 cut(s) 2444
AhlI ACTAGT 1 cut(s) 1085
Alw21I GWGCWC 1 cut(s) 951
Alw26I GTCTC 2 cut(s) 705, 1943
AlwI GGATC 2 cut(s) 382, 1571
Aor13HI TCCGGA 1 cut(s) 715
AoxI GGCC 2 cut(s) 1343, 2125
ApeKI GCWGC 4 cut(s) 63, 1448, 1944, 2428
ApoI RAATTY 6 cut(s) 203, 643, 1138, 1310, 1653, 1870
Asp700I GAANNNNTTC 3 cut(s) 16, 1399, 2043
AspS9I GGNCC 1 cut(s) 1344
AsuC2I CCSGG 2 cut(s) 125, 2288
AsuHPI GGTGA 4 cut(s) 304, 1795, 1838, 1861
AxyI CCTNAGG 1 cut(s) 620
BanII GRGCYC 2 cut(s) 1383, 1933
BauI CACGAG 1 cut(s) 702
BbsI GAAGAC 2 cut(s) 1836, 2157
Bbv12I GWGCWC 1 cut(s) 951
BbvCI CCTCAGC 1 cut(s) 78
BbvI GCAGC 4 cut(s) 50, 1460, 1931, 2415
BccI CCATC 9 cut(s) 395, 898, 1385, 1633, 1787, 2125, 2207, 2260, 2332
BceAI ACGGC 2 cut(s) 557, 1078
BciVI GTATCC 1 cut(s) 139
BclI TGATCA 2 cut(s) 2050, 2365
BcnI CCSGG 2 cut(s) 125, 2288
BcoDI GTCTC 2 cut(s) 705, 1943
BcuI ACTAGT 1 cut(s) 1085
BfaI CTAG 8 cut(s) 597, 650, 1086, 1290, 1518, 2123, 2228, 2387
BfmI CTRYAG 3 cut(s) 1163, 1239, 1801
BfuAI ACCTGC 1 cut(s) 1195
BfuI GTATCC 1 cut(s) 139
BglII AGATCT 1 cut(s) 173
BisI GCNGC 9 cut(s) 64, 89, 92, 95, 98, 231, 1449, 1945, 2429
BlpI GCTNAGC 1 cut(s) 1200
BlsI GCNGC 9 cut(s) 65, 90, 93, 96, 99, 232, 1450, 1946, 2430
BmcAI AGTACT 1 cut(s) 1084
Bme1390I CCNGG 2 cut(s) 125, 2288
BmgT120I GGNCC 1 cut(s) 1344
BmiI GGNNCC 1 cut(s) 1930
BmrFI CCNGG 2 cut(s) 125, 2288
BmrI ACTGGG 1 cut(s) 921
BmsI GCATC 6 cut(s) 199, 1418, 1711, 2023, 2281, 2440
BmuI ACTGGG 1 cut(s) 921
BpiI GAAGAC 2 cut(s) 1836, 2157
BplI GAGNNNNNCTC 2 cut(s) 578, 610
Bpu10I CCTNAGC 1 cut(s) 78
Bpu1102I GCTNAGC 1 cut(s) 1200
BpuEI CTTGAG 1 cut(s) 1511
BpuMI CCSGG 2 cut(s) 125, 2288
BsaI GGTCTC 1 cut(s) 1943
BsaJI CCNNGG 2 cut(s) 459, 1933
BsaWI WCCGGW 1 cut(s) 715
BsaXI ACNNNNNCTCC 6 cut(s) 753, 783, 1427, 1457, 2057, 2087
Bsc4I CCNNNNNNNGG 3 cut(s) 441, 895, 1036
Bse1I ACTGG 3 cut(s) 927, 1227, 1640
Bse21I CCTNAGG 1 cut(s) 620
Bse3DI GCAATG 2 cut(s) 412, 813
BseAI TCCGGA 1 cut(s) 715
BseDI CCNNGG 2 cut(s) 459, 1933
BseGI GGATG 7 cut(s) 724, 1114, 1644, 1723, 2013, 2296, 2343
BseLI CCNNNNNNNGG 3 cut(s) 441, 895, 1036
BseMI GCAATG 2 cut(s) 412, 813
BseMII CTCAG 8 cut(s) 92, 429, 557, 634, 1191, 1275, 1395, 1427
BseNI ACTGG 3 cut(s) 927, 1227, 1640
BseRI GAGGAG 3 cut(s) 232, 893, 1754
BseXI GCAGC 4 cut(s) 50, 1460, 1931, 2415
BseYI CCCAGC 1 cut(s) 1346
BsgI GTGCAG 3 cut(s) 1287, 1765, 2082
BshFI GGCC 2 cut(s) 1345, 2127
BsiHKAI GWGCWC 1 cut(s) 951
BsiSI CCGG 3 cut(s) 124, 716, 2288
BslFI GGGAC 6 cut(s) 53, 178, 454, 601, 1646, 2270
BslI CCNNNNNNNGG 3 cut(s) 441, 895, 1036
BsmAI GTCTC 2 cut(s) 705, 1943
BsmFI GGGAC 6 cut(s) 53, 178, 454, 601, 1646, 2270
BsmI GAATGC 1 cut(s) 1399
BsnI GGCC 2 cut(s) 1345, 2127
Bso31I GGTCTC 1 cut(s) 1943
Bsp1286I GDGCHC 3 cut(s) 951, 1383, 1933
Bsp13I TCCGGA 1 cut(s) 715
Bsp1407I TGTACA 1 cut(s) 1907
Bsp143I GATC 5 cut(s) 173, 387, 1563, 2050, 2365
Bsp1720I GCTNAGC 1 cut(s) 1200
Bsp19I CCATGG 1 cut(s) 459
BspACI CCGC 9 cut(s) 86, 89, 92, 95, 98, 231, 391, 431, 483
BspANI GGCC 2 cut(s) 1345, 2127
BspCNI CTCAG 8 cut(s) 91, 430, 556, 633, 1192, 1274, 1396, 1426
BspEI TCCGGA 1 cut(s) 715
BspHI TCATGA 2 cut(s) 199, 2205
BspLI GGNNCC 1 cut(s) 1930
BspMAI CTGCAG 1 cut(s) 1167
BspMI ACCTGC 1 cut(s) 1195
BspPI GGATC 2 cut(s) 382, 1571
BspTNI GGTCTC 1 cut(s) 1943
BsrDI GCAATG 2 cut(s) 412, 813
BsrGI TGTACA 1 cut(s) 1907
BsrI ACTGG 3 cut(s) 927, 1227, 1640
BssECI CCNNGG 2 cut(s) 459, 1933
BssMI GATC 5 cut(s) 173, 387, 1563, 2050, 2365
BssSI CACGAG 1 cut(s) 702
BssT1I CCWWGG 2 cut(s) 459, 1933
Bst2BI CACGAG 1 cut(s) 702
Bst4CI ACNGT 7 cut(s) 539, 683, 1459, 1802, 1826, 1907, 2203
Bst6I CTCTTC 1 cut(s) 221
BstAUI TGTACA 1 cut(s) 1907
BstC8I GCNNGC 4 cut(s) 372, 414, 1197, 1505
BstDSI CCRYGG 1 cut(s) 459
BstF5I GGATG 7 cut(s) 724, 1114, 1644, 1723, 2013, 2296, 2343
BstKTI GATC 5 cut(s) 176, 390, 1566, 2053, 2368
BstMAI GTCTC 2 cut(s) 705, 1943
BstMBI GATC 5 cut(s) 173, 387, 1563, 2050, 2365
BstNSI RCATGY 3 cut(s) 1199, 1507, 2448
BstSCI CCNGG 2 cut(s) 123, 2286
BstSFI CTRYAG 3 cut(s) 1163, 1239, 1801
BstV1I GCAGC 4 cut(s) 50, 1460, 1931, 2415
BstV2I GAAGAC 2 cut(s) 1836, 2157
BstX2I RGATCY 2 cut(s) 173, 1563
BstYI RGATCY 2 cut(s) 173, 1563
Bsu36I CCTNAGG 1 cut(s) 620
BsuI GTATCC 1 cut(s) 139
BsuRI GGCC 2 cut(s) 1345, 2127
BtgI CCRYGG 1 cut(s) 459
BtsCI GGATG 7 cut(s) 724, 1114, 1644, 1723, 2013, 2296, 2343
BtsI GCAGTG 1 cut(s) 2094
BtsIMutI CAGTG 7 cut(s) 435, 1094, 1234, 1304, 1464, 2094, 2199
BveI ACCTGC 1 cut(s) 1195
Cac8I GCNNGC 4 cut(s) 372, 414, 1197, 1505
CciI TCATGA 2 cut(s) 199, 2205
Cfr13I GGNCC 1 cut(s) 1344
CseI GACGC 2 cut(s) 55, 995
Csp6I GTAC 9 cut(s) 160, 344, 540, 908, 1083, 1798, 1908, 1980, 2177
CviQI GTAC 9 cut(s) 160, 344, 540, 908, 1083, 1798, 1908, 1980, 2177
DpnI GATC 5 cut(s) 175, 389, 1565, 2052, 2367
DpnII GATC 5 cut(s) 173, 387, 1563, 2050, 2365
Eam1104I CTCTTC 1 cut(s) 221
EarI CTCTTC 1 cut(s) 221
EciI GGCGGA 1 cut(s) 75
Eco130I CCWWGG 2 cut(s) 459, 1933
Eco24I GRGCYC 2 cut(s) 1383, 1933
Eco31I GGTCTC 1 cut(s) 1943
Eco57I CTGAAG 4 cut(s) 491, 1118, 1324, 1847
Eco81I CCTNAGG 1 cut(s) 620
EcoRI GAATTC 2 cut(s) 203, 643
EcoT14I CCWWGG 2 cut(s) 459, 1933
EcoT22I ATGCAT 1 cut(s) 1692
EcoT38I GRGCYC 2 cut(s) 1383, 1933
ErhI CCWWGG 2 cut(s) 459, 1933
FalI AAGNNNNNCTT 2 cut(s) 1532, 1564
FaqI GGGAC 6 cut(s) 53, 178, 454, 601, 1646, 2270
FauI CCCGC 1 cut(s) 438
FauNDI CATATG 2 cut(s) 940, 1777
FbaI TGATCA 2 cut(s) 2050, 2365
FblI GTMKAC 1 cut(s) 1242
Fnu4HI GCNGC 9 cut(s) 64, 89, 92, 95, 98, 231, 1449, 1945, 2429
FokI GGATG 7 cut(s) 731, 1121, 1651, 1730, 2020, 2303, 2350
FriOI GRGCYC 2 cut(s) 1383, 1933
Fsp4HI GCNGC 9 cut(s) 64, 89, 92, 95, 98, 231, 1449, 1945, 2429
FspBI CTAG 8 cut(s) 597, 650, 1086, 1290, 1518, 2123, 2228, 2387
GluI GCNGC 9 cut(s) 64, 89, 92, 95, 98, 231, 1449, 1945, 2429
GsaI CCCAGC 1 cut(s) 1350
HaeIII GGCC 2 cut(s) 1345, 2127
HapII CCGG 3 cut(s) 124, 716, 2288
HgaI GACGC 2 cut(s) 55, 995
HincII GTYRAC 1 cut(s) 253
HindII GTYRAC 1 cut(s) 253
HindIII AAGCTT 3 cut(s) 294, 414, 2349
HinfI GANTC 4 cut(s) 526, 922, 1298, 1493
HpaII CCGG 3 cut(s) 124, 716, 2288
HphI GGTGA 4 cut(s) 304, 1795, 1838, 1861
Hpy166II GTNNAC 7 cut(s) 253, 344, 724, 732, 1243, 1612, 2225
Hpy188I TCNGA 2 cut(s) 933, 1405
Hpy188III TCNNGA 6 cut(s) 25, 200, 622, 716, 2048, 2206
Hpy8I GTNNAC 7 cut(s) 253, 344, 724, 732, 1243, 1612, 2225
Hpy99I CGWCG 2 cut(s) 230, 989
HpyAV CCTTC 7 cut(s) 6, 760, 997, 1610, 1954, 2054, 2056
HpyCH4III ACNGT 7 cut(s) 539, 683, 1459, 1802, 1826, 1907, 2203
HpyCH4IV ACGT 2 cut(s) 1920, 2175
HpySE526I ACGT 2 cut(s) 1920, 2175
Kpn2I TCCGGA 1 cut(s) 715
Ksp22I TGATCA 2 cut(s) 2050, 2365
Kzo9I GATC 5 cut(s) 173, 387, 1563, 2050, 2365
LmnI GCTCC 4 cut(s) 4, 823, 954, 1928
Lsp1109I GCAGC 4 cut(s) 50, 1460, 1931, 2415
LweI GCATC 6 cut(s) 199, 1418, 1711, 2023, 2281, 2440
MaeI CTAG 8 cut(s) 597, 650, 1086, 1290, 1518, 2123, 2228, 2387
MaeII ACGT 2 cut(s) 1920, 2175
MaeIII GTNAC 6 cut(s) 829, 1129, 1144, 1459, 1849, 2296
MalI GATC 5 cut(s) 175, 389, 1565, 2052, 2367
MboI GATC 5 cut(s) 173, 387, 1563, 2050, 2365
MboII GAAGA 7 cut(s) 208, 882, 1841, 1983, 2157, 2252, 2357
MfeI CAATTG 1 cut(s) 1317
MflI RGATCY 2 cut(s) 173, 1563
MhlI GDGCHC 3 cut(s) 951, 1383, 1933
MmeI TCCRAC 2 cut(s) 495, 951
Mph1103I ATGCAT 1 cut(s) 1692
MroI TCCGGA 1 cut(s) 715
MroXI GAANNNNTTC 3 cut(s) 16, 1399, 2043
MslI CAYNNNNRTG 2 cut(s) 464, 2204
MspA1I CMGCKG 1 cut(s) 1867
MspI CCGG 3 cut(s) 124, 716, 2288
MspR9I CCNGG 2 cut(s) 125, 2288
MunI CAATTG 1 cut(s) 1317
Mva1269I GAATGC 1 cut(s) 1399
NciI CCSGG 2 cut(s) 125, 2288
NcoI CCATGG 1 cut(s) 459
NdeI CATATG 2 cut(s) 940, 1777
NdeII GATC 5 cut(s) 173, 387, 1563, 2050, 2365
NlaIV GGNNCC 1 cut(s) 1930
NmuCI GTSAC 3 cut(s) 1459, 1849, 2296
NsiI ATGCAT 1 cut(s) 1692
NspI RCATGY 3 cut(s) 1199, 1507, 2448
PaeI GCATGC 2 cut(s) 1199, 1507
PagI TCATGA 2 cut(s) 199, 2205
PciI ACATGT 1 cut(s) 2444
PctI GAATGC 1 cut(s) 1399
PdmI GAANNNNTTC 3 cut(s) 16, 1399, 2043
PfeI GAWTC 4 cut(s) 526, 922, 1298, 1493
PflFI GACNNNGTC 1 cut(s) 1247
PfoI TCCNGGA 1 cut(s) 2286
PkrI GCNGC 9 cut(s) 65, 90, 93, 96, 99, 232, 1450, 1946, 2430
PscI ACATGT 1 cut(s) 2444
PsiI TTATAA 2 cut(s) 1884, 1895
PspFI CCCAGC 1 cut(s) 1346
PspN4I GGNNCC 1 cut(s) 1930
PspPI GGNCC 1 cut(s) 1344
PsrI GAACNNNNNNTAC 4 cut(s) 120, 152, 2133, 2165
PstI CTGCAG 1 cut(s) 1167
PsuI RGATCY 2 cut(s) 173, 1563
PsyI GACNNNGTC 1 cut(s) 1247
PvuII CAGCTG 1 cut(s) 1867
RsaI GTAC 9 cut(s) 161, 345, 541, 909, 1084, 1799, 1909, 1981, 2178
RsaNI GTAC 9 cut(s) 160, 344, 540, 908, 1083, 1798, 1908, 1980, 2177
RseI CAYNNNNRTG 2 cut(s) 464, 2204
SatI GCNGC 9 cut(s) 64, 89, 92, 95, 98, 231, 1449, 1945, 2429
Sau3AI GATC 5 cut(s) 173, 387, 1563, 2050, 2365
Sau96I GGNCC 1 cut(s) 1344
ScaI AGTACT 1 cut(s) 1084
ScrFI CCNGG 2 cut(s) 125, 2288
SduI GDGCHC 3 cut(s) 951, 1383, 1933
SfaNI GCATC 6 cut(s) 199, 1418, 1711, 2023, 2281, 2440
SfcI CTRYAG 3 cut(s) 1163, 1239, 1801
SmiMI CAYNNNNRTG 2 cut(s) 464, 2204
SmlI CTYRAG 1 cut(s) 1526
SmoI CTYRAG 1 cut(s) 1526
SpeI ACTAGT 1 cut(s) 1085
SphI GCATGC 2 cut(s) 1199, 1507
SsiI CCGC 9 cut(s) 86, 89, 92, 95, 98, 231, 391, 431, 483
SspI AATATT 1 cut(s) 2017
SspMI CTAG 8 cut(s) 597, 650, 1086, 1290, 1518, 2123, 2228, 2387
StyD4I CCNGG 2 cut(s) 123, 2286
StyI CCWWGG 2 cut(s) 459, 1933
TaaI ACNGT 7 cut(s) 539, 683, 1459, 1802, 1826, 1907, 2203
TaiI ACGT 2 cut(s) 1923, 2178
TaqI TCGA 2 cut(s) 26, 207
TatI WGTACW 4 cut(s) 343, 539, 1082, 1907
TauI GCSGC 5 cut(s) 91, 94, 97, 100, 233
TfiI GAWTC 4 cut(s) 526, 922, 1298, 1493
TscAI CASTG 7 cut(s) 442, 1101, 1234, 1311, 1464, 2101, 2206
TseFI GTSAC 3 cut(s) 1459, 1849, 2296
TseI GCWGC 4 cut(s) 63, 1448, 1944, 2428
Tsp45I GTSAC 3 cut(s) 1459, 1849, 2296
TspGWI ACGGA 3 cut(s) 214, 260, 603
TspRI CASTG 7 cut(s) 442, 1101, 1234, 1311, 1464, 2101, 2206
Tth111I GACNNNGTC 1 cut(s) 1247
XapI RAATTY 6 cut(s) 203, 643, 1138, 1310, 1653, 1870
XceI RCATGY 3 cut(s) 1199, 1507, 2448
XmiI GTMKAC 1 cut(s) 1242
XmnI GAANNNNTTC 3 cut(s) 16, 1399, 2043
XspI CTAG 8 cut(s) 597, 650, 1086, 1290, 1518, 2123, 2228, 2387
ZrmI AGTACT 1 cut(s) 1084
Zsp2I ATGCAT 1 cut(s) 1692
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.