Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0003055

Physical Location & Seq

Genomic Coordinates Reverse (-)

11686784 .. 11687741

Gene Structure 958 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0147600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGTTCATCTGCATTGTTTGGGAAACTGAAGTCTGGGTTAGTCGTGTTAGCAACTCTAGCACTACTGACCCTTTAGATGTGTTTGCTAGAGATGTGGCCCTGAAAACTCTTGCGCAGCACCGGCCTCACACGGGTGCTGTATACAAGGTTCTCCTCCCGGCTAACCTATCCGGCATGGAAGTGTTCGTTGAAGGGATTCGAAGCAGGAGGCTGTGGAACAGAGGTGCTGAAAAGCTCGGCTGTTTTCATATCCCATCAAGAACCAAGCCAATGCCTCATGTGAAGAGACTGGCTTTGGTGTATCAAGACTTGGGGAATCTGTCATCTCAGTTCTACCGTCTTCCAGGTTACTCATTTCTCACCTCTGTTGTTGGTTTTCTCGTTTATGATGCAACACATACAAGTTTGAAAAGTGCCAAAATGGTTGGTCTAAACACAATGGGGAAGTCGATATTGATTCAGTTCCCAAATCTGACATCGGAAGAACGGTTGAACTCCAATGCAAAATGCGCGTCATTTGCTGCCAGTGGGACGGTTTACCTCAGTGACATGATATATCCTGGTATATGTAACACCACGGGTCATGGTCATTTTTCAATTGTTGTTCCAGTGAAGAAAAAACCACTGATCCTGCGGTATTCATGGGTAGTTGCGATTGTCCTTGGAGTTCTTGCAGCTATTTTGGGGTGTTATCTTGGGATGGTGTGTATGAGACATCGGAAGAGGAAGAAGTTTCAAGATATGGAAGAACAGGCTGACGACGATTCAGTTCTTGAAAATAGGTGGGTTCGTGGTAGCAAAATGCCTTCTGGTGGAGTTACAAGAACTCAGCCAGTTTCTGAGAATGGTTTCCAACACCTAGCTTCACCTGATCACTTCATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

294

Amino Acids

32.81

Weight (kDa)

9.53

Isoelectric Point (pI)

37.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF1191	PF06697	22 - 203	3.6e-58	Protein of unknown function (DUF1191)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003055)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19440 AT4G19440 AT4G19440 AT4G19440
fragaria_vesca	FvH4_4g10410 FvH4_4g10410 FvH4_4g10440 FvH4_5g24430 FvH4_5g24430 FvH4_5g24430 FvH4_5g24430
malus_domestica	MD06G1022200.v1.1
prunus_persica	Prupe.3G018200_v2.0.a1
pyrus_communis	pycom06g01610
rosa_chinensis	RchiOBHm_Chr4g0405931 RchiOBHm_Chr7g0214821 RchiOBHm_Chr7g0219861
rosa_laevigata	RLG00000002716 RLG00000008810
rosa_multiflora	Rmu_sc0002308.1_g000021 Rmu_sc0019702.1_g000004 Rmu_ssc0000087.1_g000071
rosa_roxburghii	Rroxscaffold_3G00244980 Rroxscaffold_5G00350670
rosa_rugosa	Rorug04G0064100 Rorug07G0147600 Rorug07G0147700 Rorug07G0147800
rosa_samantha	Rh4AG134900 Rh4BG130500 Rh4CG142300 Rh4DG129200 Rh7AG284500 Rh7BG275300 Rh7CG303700 Rh7DG287900
rosa_wichuraiana	Rw4G010980 Rw7G024260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	114
AccI	GTMKAC	1 cut(s)	141
AccII	CGCG	1 cut(s)	512
AciI	CCGC	1 cut(s)	634
AclWI	GGATC	1 cut(s)	622
AcuI	CTGAAG	1 cut(s)	48
AfiI	CCNNNNNNNGG	2 cut(s)	131, 812
AgsI	TTSAA	6 cut(s)	191, 409, 493, 597, 737, 776
AjnI	CCWGG	2 cut(s)	343, 559
AleI	CACNNNNGTG	1 cut(s)	132
AluBI	AGCT	3 cut(s)	235, 677, 863
AluI	AGCT	3 cut(s)	235, 677, 863
Alw26I	GTCTC	2 cut(s)	280, 706
AlwI	GGATC	1 cut(s)	622
AlwNI	CAGNNNCTG	1 cut(s)	839
AoxI	GGCC	2 cut(s)	96, 122
ApeKI	GCWGC	3 cut(s)	115, 521, 674
ArsI	GACNNNNNNTTYG	2 cut(s)	497, 529
Asp700I	GAANNNNTTC	2 cut(s)	195, 848
AspLEI	GCGC	2 cut(s)	115, 512
AspS9I	GGNCC	1 cut(s)	97
AsuC2I	CCSGG	1 cut(s)	158
AsuHPI	GGTGA	2 cut(s)	352, 858
AsuII	TTCGAA	1 cut(s)	199
BbsI	GAAGAC	1 cut(s)	332
BbvI	GCAGC	3 cut(s)	127, 508, 686
BccI	CCATC	2 cut(s)	262, 694
BciT130I	CCWGG	2 cut(s)	345, 561
BclI	TGATCA	1 cut(s)	871
BcnI	CCSGG	1 cut(s)	158
BcoDI	GTCTC	2 cut(s)	280, 706
BfaI	CTAG	3 cut(s)	57, 87, 860
BisI	GCNGC	3 cut(s)	116, 522, 675
BlsI	GCNGC	3 cut(s)	117, 523, 676
Bme1390I	CCNGG	3 cut(s)	158, 345, 561
BmgT120I	GGNCC	1 cut(s)	97
BmrFI	CCNGG	3 cut(s)	158, 345, 561
BmsI	GCATC	1 cut(s)	379
BpiI	GAAGAC	1 cut(s)	332
Bpu14I	TTCGAA	1 cut(s)	199
BpuMI	CCSGG	1 cut(s)	158
BsaJI	CCNNGG	2 cut(s)	576, 661
Bsc4I	CCNNNNNNNGG	2 cut(s)	131, 812
Bse118I	RCCGGY	1 cut(s)	120
Bse1I	ACTGG	4 cut(s)	294, 525, 608, 833
BseBI	CCWGG	2 cut(s)	345, 561
BseDI	CCNNGG	2 cut(s)	576, 661
BseGI	GGATG	1 cut(s)	705
BseLI	CCNNNNNNNGG	2 cut(s)	131, 812
BseMII	CTCAG	4 cut(s)	341, 556, 831, 842
BseNI	ACTGG	4 cut(s)	294, 525, 608, 833
BseRI	GAGGAG	1 cut(s)	143
BseXI	GCAGC	3 cut(s)	127, 508, 686
Bsh1236I	CGCG	1 cut(s)	512
BshFI	GGCC	2 cut(s)	98, 124
BsiSI	CCGG	3 cut(s)	121, 158, 171
BslFI	GGGAC	1 cut(s)	544
BslI	CCNNNNNNNGG	2 cut(s)	131, 812
BsmAI	GTCTC	2 cut(s)	280, 706
BsmFI	GGGAC	1 cut(s)	544
BsnI	GGCC	2 cut(s)	98, 124
Bsp119I	TTCGAA	1 cut(s)	199
Bsp143I	GATC	2 cut(s)	627, 871
BspACI	CCGC	1 cut(s)	634
BspANI	GGCC	2 cut(s)	98, 124
BspCNI	CTCAG	4 cut(s)	340, 555, 832, 841
BspFNI	CGCG	1 cut(s)	512
BspPI	GGATC	1 cut(s)	622
BspT104I	TTCGAA	1 cut(s)	199
BsrFI	RCCGGY	1 cut(s)	120
BsrI	ACTGG	4 cut(s)	294, 525, 608, 833
BssAI	RCCGGY	1 cut(s)	120
BssECI	CCNNGG	2 cut(s)	576, 661
BssMI	GATC	2 cut(s)	627, 871
BssNAI	GTATAC	1 cut(s)	142
BssT1I	CCWWGG	1 cut(s)	661
Bst1107I	GTATAC	1 cut(s)	142
Bst2UI	CCWGG	2 cut(s)	345, 561
Bst4CI	ACNGT	3 cut(s)	338, 489, 535
Bst6I	CTCTTC	2 cut(s)	278, 716
BstBI	TTCGAA	1 cut(s)	199
BstDEI	CTNAG	4 cut(s)	327, 542, 828, 840
BstDSI	CCRYGG	1 cut(s)	576
BstF5I	GGATG	1 cut(s)	705
BstFNI	CGCG	1 cut(s)	512
BstHHI	GCGC	2 cut(s)	115, 512
BstKTI	GATC	2 cut(s)	630, 874
BstMAI	GTCTC	2 cut(s)	280, 706
BstMBI	GATC	2 cut(s)	627, 871
BstMWI	GCNNNNNNNGC	4 cut(s)	57, 121, 509, 518
BstNI	CCWGG	2 cut(s)	345, 561
BstSCI	CCNGG	3 cut(s)	156, 343, 559
BstUI	CGCG	1 cut(s)	512
BstV1I	GCAGC	3 cut(s)	127, 508, 686
BstV2I	GAAGAC	1 cut(s)	332
BstZ17I	GTATAC	1 cut(s)	142
BsuRI	GGCC	2 cut(s)	98, 124
BtgI	CCRYGG	1 cut(s)	576
BtsCI	GGATG	1 cut(s)	705
BtsIMutI	CAGTG	4 cut(s)	532, 550, 615, 623
CaiI	CAGNNNCTG	1 cut(s)	839
CfoI	GCGC	2 cut(s)	115, 512
Cfr10I	RCCGGY	1 cut(s)	120
Cfr13I	GGNCC	1 cut(s)	97
CseI	GACGC	1 cut(s)	501
CviAII	CATG	5 cut(s)	175, 278, 550, 584, 642
DdeI	CTNAG	4 cut(s)	327, 542, 828, 840
DpnI	GATC	2 cut(s)	629, 873
DpnII	GATC	2 cut(s)	627, 871
Eam1104I	CTCTTC	2 cut(s)	278, 716
EarI	CTCTTC	2 cut(s)	278, 716
Eco130I	CCWWGG	1 cut(s)	661
Eco57I	CTGAAG	1 cut(s)	48
EcoRII	CCWGG	2 cut(s)	343, 559
EcoT14I	CCWWGG	1 cut(s)	661
ErhI	CCWWGG	1 cut(s)	661
FaeI	CATG	5 cut(s)	178, 281, 553, 587, 645
FaqI	GGGAC	1 cut(s)	544
FatI	CATG	5 cut(s)	174, 277, 549, 583, 641
FbaI	TGATCA	1 cut(s)	871
FblI	GTMKAC	1 cut(s)	141
Fnu4HI	GCNGC	3 cut(s)	116, 522, 675
FokI	GGATG	1 cut(s)	712
Fsp4HI	GCNGC	3 cut(s)	116, 522, 675
FspBI	CTAG	3 cut(s)	57, 87, 860
FspI	TGCGCA	1 cut(s)	114
GlaI	GCGC	2 cut(s)	114, 511
GluI	GCNGC	3 cut(s)	116, 522, 675
HaeIII	GGCC	2 cut(s)	98, 124
HapII	CCGG	3 cut(s)	121, 158, 171
HgaI	GACGC	1 cut(s)	501
HhaI	GCGC	2 cut(s)	115, 512
Hin1II	CATG	5 cut(s)	178, 281, 553, 587, 645
Hin6I	GCGC	2 cut(s)	113, 510
HinP1I	GCGC	2 cut(s)	113, 510
HinfI	GANTC	4 cut(s)	196, 316, 457, 764
HpaII	CCGG	3 cut(s)	121, 158, 171
HphI	GGTGA	2 cut(s)	352, 858
Hpy166II	GTNNAC	2 cut(s)	142, 538
Hpy188I	TCNGA	5 cut(s)	474, 481, 720, 841, 884
Hpy188III	TCNNGA	4 cut(s)	258, 305, 737, 773
Hpy8I	GTNNAC	2 cut(s)	142, 538
Hpy99I	CGWCG	1 cut(s)	764
HpyAV	CCTTC	2 cut(s)	185, 816
HpyCH4III	ACNGT	3 cut(s)	338, 489, 535
HpyCH4V	TGCA	4 cut(s)	12, 392, 503, 674
HpyF10VI	GCNNNNNNNGC	4 cut(s)	57, 121, 509, 518
HpyF3I	CTNAG	4 cut(s)	327, 542, 828, 840
Hsp92II	CATG	5 cut(s)	178, 281, 553, 587, 645
HspAI	GCGC	2 cut(s)	113, 510
Ksp22I	TGATCA	1 cut(s)	871
Kzo9I	GATC	2 cut(s)	627, 871
Lsp1109I	GCAGC	3 cut(s)	127, 508, 686
LweI	GCATC	1 cut(s)	379
MaeI	CTAG	3 cut(s)	57, 87, 860
MaeIII	GTNAC	4 cut(s)	347, 545, 569, 817
MalI	GATC	2 cut(s)	629, 873
MboI	GATC	2 cut(s)	627, 871
MboII	GAAGA	7 cut(s)	295, 332, 494, 625, 733, 739, 758
MfeI	CAATTG	1 cut(s)	597
MluCI	AATT	1 cut(s)	597
MmeI	TCCRAC	1 cut(s)	877
MnlI	CCTC	8 cut(s)	135, 164, 201, 215, 285, 373, 551, 717
MroXI	GAANNNNTTC	2 cut(s)	195, 848
MslI	CAYNNNNRTG	2 cut(s)	132, 179
MspI	CCGG	3 cut(s)	121, 158, 171
MspR9I	CCNGG	3 cut(s)	158, 345, 561
MunI	CAATTG	1 cut(s)	597
MvaI	CCWGG	2 cut(s)	345, 561
MvnI	CGCG	1 cut(s)	512
MwoI	GCNNNNNNNGC	4 cut(s)	57, 121, 509, 518
NciI	CCSGG	1 cut(s)	158
NdeII	GATC	2 cut(s)	627, 871
NlaIII	CATG	5 cut(s)	178, 281, 553, 587, 645
NmeAIII	GCCGAG	1 cut(s)	216
NmuCI	GTSAC	1 cut(s)	545
NsbI	TGCGCA	1 cut(s)	114
NspV	TTCGAA	1 cut(s)	199
OliI	CACNNNNGTG	1 cut(s)	132
PdmI	GAANNNNTTC	2 cut(s)	195, 848
PfeI	GAWTC	4 cut(s)	196, 316, 457, 764
PkrI	GCNGC	3 cut(s)	117, 523, 676
Psp6I	CCWGG	2 cut(s)	343, 559
PspGI	CCWGG	2 cut(s)	343, 559
PspPI	GGNCC	1 cut(s)	97
PsrI	GAACNNNNNNTAC	2 cut(s)	132, 164
PstNI	CAGNNNCTG	1 cut(s)	839
RseI	CAYNNNNRTG	2 cut(s)	132, 179
SatI	GCNGC	3 cut(s)	116, 522, 675
Sau3AI	GATC	2 cut(s)	627, 871
Sau96I	GGNCC	1 cut(s)	97
ScrFI	CCNGG	3 cut(s)	158, 345, 561
SfaNI	GCATC	1 cut(s)	379
SfuI	TTCGAA	1 cut(s)	199
SmiMI	CAYNNNNRTG	2 cut(s)	132, 179
Sse9I	AATT	1 cut(s)	597
SsiI	CCGC	1 cut(s)	634
SspMI	CTAG	3 cut(s)	57, 87, 860
StyD4I	CCNGG	3 cut(s)	156, 343, 559
StyI	CCWWGG	1 cut(s)	661
TaaI	ACNGT	3 cut(s)	338, 489, 535
TaqI	TCGA	2 cut(s)	199, 449
TasI	AATT	1 cut(s)	597
TfiI	GAWTC	4 cut(s)	196, 316, 457, 764
TscAI	CASTG	4 cut(s)	532, 550, 615, 630
TseFI	GTSAC	1 cut(s)	545
TseI	GCWGC	3 cut(s)	115, 521, 674
Tsp45I	GTSAC	1 cut(s)	545
TspDTI	ATGAA	3 cut(s)	236, 630, 868
TspRI	CASTG	4 cut(s)	532, 550, 615, 630
XmiI	GTMKAC	1 cut(s)	141
XmnI	GAANNNNTTC	2 cut(s)	195, 848
XspI	CTAG	3 cut(s)	57, 87, 860

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.